NO03G04660.1, NO03G04660.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO03G04660.1
Unique NameNO03G04660.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1102
Alignment locationchr3:1333466..1334925 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:1333466..1334925 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO03G04660.1 vs.
Match: EWM29895.1 (2fe-2s iron-sulfur cluster binding domain protein [Nannochloropsis gaditana])

HSP 1 Score: 301.2 bits (770), Expect = 2.100e-78
Identity = 148/183 (80.87%), Postives = 160/183 (87.43%), Query Frame = 0 
Query:    1 MASTLLAKTMLRQAVVVGARGPAVAARAAG--VGSTGSSRG-LSWVKDVTVNVTFINHEGLRITVPGRVGQSLLDVAQMHDIELESGCGGGGAEQQKKHSERWTEDLFGRGPCCHFCHVKIPSPWIDFVEDKQPATDKENELLQEHWVEEASANSRLGCQVTLTKSLDGIQVFIPDGPPADCP 181
            MAS LLAK  LRQA+ VGA   A   R +G  + STGSSR  L+ VKDVTVNVTFINHEGLRITVPGRVGQSLLDVAQMHDIELESGCGGGGA QQKKHSERWTEDLFGRGPCCHFCHVKIPSPWI+ + DKQPAT+KE+ELL+EHW EEA+ NSRLGCQV LTK+LDG+QVFIPDGPPADCP
Sbjct:    1 MASALLAKKALRQALAVGAHSQATVGRRSGAVINSTGSSRRTLASVKDVTVNVTFINHEGLRITVPGRVGQSLLDVAQMHDIELESGCGGGGAVQQKKHSERWTEDLFGRGPCCHFCHVKIPSPWINTIHDKQPATEKEHELLEEHWQEEATDNSRLGCQVMLTKNLDGMQVFIPDGPPADCP 183
The following BLAST results are available for this feature:
BLAST of NO03G04660.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29895.12.100e-7880.872fe-2s iron-sulfur cluster binding domain protein ... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO03G04660NO03G04660Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO03G04660.1NO03G04660.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO03G04660.1.cds1NO03G04660.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO03G04660.1.cds2NO03G04660.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO03G04660.1.cds3NO03G04660.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO03G04660.1 ID=NO03G04660.1|Name=NO03G04660.1|organism=Nannochloropsis oceanica|type=mRNA|length=1102bp
TCGGCTTAACAGTCAGAACTCGCATTGCAAGCTGCATGATGATCCTTGCC
CAACGTTTGGGGTCTTGCTTGGTGTATGCACAAGCGTCCGCCCACTACGT
CGGCTGTCTCAATCATCTTGTTAACATGTGGGTCTGTTGCTCAAGATGGT
AGTGGCCGTCAGAGCCGGCGGCGCACTGCATAGAGGCAAATGAACAAGAC
TTTCTCTGTCTCTCTATGCTTGATGATGTTGTCTTGTCCTCAGCCCCGGC
TCCCATACAAAACATCCTGCCGCATACACATAGGCAGCCATGGCATCGAC
GCTTCTGGCGAAGACGATGCTCCGCCAGGCCGTGGTAGTGGGAGCCCGCG
GGCCAGCAGTTGCAGCGAGAGCGGCCGGCGTAGGGAGCACCGGGAGCAGC
AGAGGTCTTTCTTGGGTCAAGGACGTGACAGTGAACGTCACCTTTATCAA
CCATGAAGGTCTGAGGATAACAGTGCCGGGCCGAGTGGGACAAAGCTTGC
TGGACGTGGCGCAGATGCACGACATCGAGTTGGAGTCAGGATGCGGGGGT
GGTGGGGCCGAGCAGCAGAAAAAGCATTCGGAACGGTGGACGGAGGACTT
GTTTGGACGAGGCCCCTGCTGCCACTTCTGCCACGTTAAGATTCCTTCCC
CCTGGATCGACTTTGTGGAGGATAAACAGCCGGCGACGGATAAGGAGAAT
GAGCTGCTACAGGAGCATTGGGTGGAGGAAGCCTCGGCAAACTCTCGATT
GGGGTGTCAAGTGACGTTGACCAAATCCTTGGACGGAATTCAGGTATTTA
TCCCGGATGGACCGCCGGCAGATTGCCCGTAGACTCATTTGACCGATTGA
TATGGATGGATGGACGGATTGAGAGGAGGGAGGGAAGGAGGGAGGTTTGT
CGCGGCGTTCAGGAACGAGGTGTGGGCAGGGGCTTCAGAGCCCTAGGGTA
GTTAGTACAAGCGACAAGCGAGCTAGGAAGTGCAGAGGCCTTTTTTATAC
GAGTAGGGGAAGTGGAGTGGAAACAGTGAGGATGACGAATAGAGGAATAC
GGGGAAAGAACACCGTGCACAAATGATGAAATCAGTTGAGAACAGAGGGG
AA
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protein sequence of NO03G04660.1

>NO03G04660.1-protein ID=NO03G04660.1-protein|Name=NO03G04660.1|organism=Nannochloropsis oceanica|type=polypeptide|length=181bp
MASTLLAKTMLRQAVVVGARGPAVAARAAGVGSTGSSRGLSWVKDVTVNV
TFINHEGLRITVPGRVGQSLLDVAQMHDIELESGCGGGGAEQQKKHSERW
TEDLFGRGPCCHFCHVKIPSPWIDFVEDKQPATDKENELLQEHWVEEASA
NSRLGCQVTLTKSLDGIQVFIPDGPPADCP*
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mRNA from alignment at chr3:1333466..1334925-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO03G04660.1 ID=NO03G04660.1|Name=NO03G04660.1|organism=Nannochloropsis oceanica|type=mRNA|length=1460bp|location=Sequence derived from alignment at chr3:1333466..1334925- (Nannochloropsis oceanica)
TCGGCTTAACAGTCAGAACTCGCATTGCAAGCTGCATGATGATCCTTGCC
CAACGTTTGGGGTCTTGCTTGGTGTATGCACAAGCGTCCGCCCACTACGT
CGGCTGTCTCAATCATCTTGTTAACATGTGGGTCTGTTGCTCAAGATGGT
AGTGGCCGTCAGAGCCGGCGGCGCACTGCATAGAGGCAAATGAACAAGAC
TTTCTCTGTCTCTCTATGCTTGATGATGTTGTCTTGTCCTCAGCCCCGGC
TCCCATACAAAACATCCTGCCGCATACACATAGGCAGCCATGGCATCGAC
GCTTCTGGCGAAGACGATGCTCCGCCAGGCCGTGGTAGTGGGAGCCCGCG
GGCCAGCAGTTGCAGCGAGAGCGGCCGGCGTAGGGAGCACCGGGAGCAGC
AGAGGTCTTTCTTGGGTCAAGGACGTGACAGTGAACGTCACCTTTATCAA
CCATGAAGTAAGTATAGAGTGTGTGTATGTGTTGAATGCGACAAAATGTA
GGGATAATATGGACCGTTGGCATTTAAAAGGCCTCAATCAGCCACTAATG
CCTTCCCCTATCCCCTCGCACCTCTCGCACACACATATCAGGGTCTGAGG
ATAACAGTGCCGGGCCGAGTGGGACAAAGCTTGCTGGACGTGGCGCAGAT
GCACGACATCGAGTTGGAGTCAGGATGCGGGGGTGGTGGGGCCGAGCAGC
AGAAAAAGCATTCGGAACGGTGGACGGAGGACTTGTTTGGACGAGGTGAG
TGAGCGTGGGAGGAAAGCGAGAGGGGAATGAGGACGGCAATTCTATGGCA
ACGACTGTCGATTTAGTGGAGCAGGAAACAGGTATAAGTAGCGTTACCAC
CTGAGTGTGAATGGTTTGGTAGCGTCGCTTTGCGACACCGTTAATGCCAG
GGCCCAAATTCTTCTCTAGAGTAGTTGCTCACTTCCTCTCCCTCCTTCCC
CCTCATTCATCCTCTACAGGCCCCTGCTGCCACTTCTGCCACGTTAAGAT
TCCTTCCCCCTGGATCGACTTTGTGGAGGATAAACAGCCGGCGACGGATA
AGGAGAATGAGCTGCTACAGGAGCATTGGGTGGAGGAAGCCTCGGCAAAC
TCTCGATTGGGGTGTCAAGTGACGTTGACCAAATCCTTGGACGGAATTCA
GGTATTTATCCCGGATGGACCGCCGGCAGATTGCCCGTAGACTCATTTGA
CCGATTGATATGGATGGATGGACGGATTGAGAGGAGGGAGGGAAGGAGGG
AGGTTTGTCGCGGCGTTCAGGAACGAGGTGTGGGCAGGGGCTTCAGAGCC
CTAGGGTAGTTAGTACAAGCGACAAGCGAGCTAGGAAGTGCAGAGGCCTT
TTTTATACGAGTAGGGGAAGTGGAGTGGAAACAGTGAGGATGACGAATAG
AGGAATACGGGGAAAGAACACCGTGCACAAATGATGAAATCAGTTGAGAA
CAGAGGGGAA
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Coding sequence (CDS) from alignment at chr3:1333466..1334925-

>NO03G04660.1 ID=NO03G04660.1|Name=NO03G04660.1|organism=Nannochloropsis oceanica|type=CDS|length=543bp|location=Sequence derived from alignment at chr3:1333466..1334925- (Nannochloropsis oceanica)
ATGGCATCGACGCTTCTGGCGAAGACGATGCTCCGCCAGGCCGTGGTAGT
GGGAGCCCGCGGGCCAGCAGTTGCAGCGAGAGCGGCCGGCGTAGGGAGCA
CCGGGAGCAGCAGAGGTCTTTCTTGGGTCAAGGACGTGACAGTGAACGTC
ACCTTTATCAACCATGAAGGTCTGAGGATAACAGTGCCGGGCCGAGTGGG
ACAAAGCTTGCTGGACGTGGCGCAGATGCACGACATCGAGTTGGAGTCAG
GATGCGGGGGTGGTGGGGCCGAGCAGCAGAAAAAGCATTCGGAACGGTGG
ACGGAGGACTTGTTTGGACGAGGCCCCTGCTGCCACTTCTGCCACGTTAA
GATTCCTTCCCCCTGGATCGACTTTGTGGAGGATAAACAGCCGGCGACGG
ATAAGGAGAATGAGCTGCTACAGGAGCATTGGGTGGAGGAAGCCTCGGCA
AACTCTCGATTGGGGTGTCAAGTGACGTTGACCAAATCCTTGGACGGAAT
TCAGGTATTTATCCCGGATGGACCGCCGGCAGATTGCCCGTAG
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Synonyms
Publications