NO03G04650.1, NO03G04650.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO03G04650.1
Unique NameNO03G04650.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1409
Alignment locationchr3:1331391..1333040 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:1331391..1333040 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO03G04650.1 vs.
Match: EWM29924.1 (Aminoacyl-tRNA synthetase, class Ic [Nannochloropsis gaditana])

HSP 1 Score: 713.0 bits (1839), Expect = 5.600e-202
Identity = 353/427 (82.67%), Postives = 390/427 (91.33%), Query Frame = 0 
Query:    1 MSVDQRFSVQATACFTVLEAPGVTQKTSSSSSSSSSSSSKPTNGSKISSSIAIGSLVNISGSGKRGPSGLIEGKEYYVSTLPLDEKFTLARSVGEECIQEEELRSLLEKKPHPVVYDGFEPSGRMHIAQGVMRAINVNKLTQCGCVFKFWVADWFALLNNKMGGDLKKIQTVGKYMIEIWRAVGMDMRNVEFLWASEEINAHSNEYWSRVMDIARLNNLARIQRCCTIMGRKDTEEMSAAQVMYPCMQCADVFFLKADICQLGLDQRKVNMLAREYCDSVKIKFKPVILSHHMLMGLKEGQEKMSKSDPDSAIFMEDSEADLKRKIKKAFCPPEVVDGNPIVDYVKHIVFGYYGKIVIAFHGGESEEYTEYEKFEADYLSGKIHPGDLKPAVTVAINSILEPVRKHFETDAEAKKLLEQVKKFKTTR 428
            MSVD+RFSVQATA F+VLEAPG TQ++S+SSS  + +++K T     SS+++ G L +  G+  RG +GLIEGKEY+VS L  D K+ LARSVGEECIQE+ELR LLEKKPHP+VYDGFEPSGRMHIAQGVMRAIN NKLTQCGCVFKFWVADWFALLNNKMGGDLKKIQTVG+YMIEIWRAVGMDM+NVEFLWASEEINAHS+EYWSRVMDIAR+NNLARIQRCCTIMGRKDTEEMSAAQ+MYPCMQCADVFFLKADICQLGLDQRKVNMLAREYCDSVKIKFKPVI+SHHMLMGLKEGQEKMSKSDPDSAIFMEDSEADLKRKIKKAFCPPEV++GNPI+DYVKHI+FGYYGKI I F G   +EY +YE+FEADY  GKIHPGDLKPAVT+A+NSILEPVRKHFE+D  AKKLL+QVKK+KTTR
Sbjct:    1 MSVDKRFSVQATARFSVLEAPGGTQRSSTSSSQGAHNNTKST-----SSTVSHGPL-SAGGTITRGANGLIEGKEYFVSPLSADAKYALARSVGEECIQEQELRLLLEKKPHPIVYDGFEPSGRMHIAQGVMRAINANKLTQCGCVFKFWVADWFALLNNKMGGDLKKIQTVGRYMIEIWRAVGMDMQNVEFLWASEEINAHSDEYWSRVMDIARINNLARIQRCCTIMGRKDTEEMSAAQIMYPCMQCADVFFLKADICQLGLDQRKVNMLAREYCDSVKIKFKPVIISHHMLMGLKEGQEKMSKSDPDSAIFMEDSEADLKRKIKKAFCPPEVIEGNPIIDYVKHIIFGYYGKIEIEFQGNVRKEYVDYEEFEADYKGGKIHPGDLKPAVTMALNSILEPVRKHFESDPVAKKLLDQVKKYKTTR 421
The following BLAST results are available for this feature:
BLAST of NO03G04650.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29924.15.600e-20282.67Aminoacyl-tRNA synthetase, class Ic [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO03G04650NO03G04650Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO03G04650.1NO03G04650.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO03G04650.1.cds1NO03G04650.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO03G04650.1.cds2NO03G04650.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO03G04650.1 ID=NO03G04650.1|Name=NO03G04650.1|organism=Nannochloropsis oceanica|type=mRNA|length=1409bp
AAACACAGTCCACCATGTCGGTCGACCAGCGGTTCTCAGTACAGGCCACG
GCATGCTTTACGGTCCTAGAGGCCCCAGGCGTCACGCAAAAAACCTCCTC
CTCCTCGTCCTCCTCGTCGTCGTCCTCATCCAAGCCTACAAATGGTAGCA
AGATCTCTTCCTCCATAGCAATCGGGTCACTTGTAAACATAAGCGGCAGT
GGCAAGCGAGGCCCTAGCGGGCTGATTGAAGGCAAGGAGTACTACGTTTC
CACGTTGCCTTTAGACGAGAAGTTCACCTTGGCCCGTAGCGTAGGGGAGG
AATGCATTCAAGAGGAGGAGCTACGATCTCTTCTGGAAAAGAAGCCGCAT
CCTGTCGTATATGATGGCTTTGAGCCGTCGGGGCGTATGCATATTGCGCA
GGGGGTGATGCGTGCGATCAATGTGAATAAATTGACGCAGTGTGGGTGTG
TGTTCAAGTTTTGGGTGGCGGATTGGTTTGCGTTGTTGAATAACAAAATG
GGGGGAGACTTAAAGAAGATTCAGACGGTGGGGAAGTACATGATAGAGAT
CTGGAGGGCGGTGGGGATGGACATGAGAAATGTGGAGTTTTTGTGGGCCT
CGGAAGAGATTAACGCACATTCGAATGAGTACTGGTCTAGGGTGATGGAC
ATTGCCCGCTTGAATAACCTGGCGAGAATTCAACGATGTTGTACGATCAT
GGGGAGGAAGGACACGGAGGAGATGAGCGCGGCGCAAGTGATGTATCCCT
GCATGCAGTGCGCGGATGTGTTTTTTTTGAAAGCCGACATCTGTCAGTTG
GGCCTCGATCAACGGAAGGTGAACATGCTGGCACGTGAGTATTGTGACAG
TGTCAAGATAAAGTTCAAGCCGGTGATTTTGTCGCATCACATGTTGATGG
GCCTGAAGGAGGGGCAGGAGAAGATGAGTAAGTCAGACCCGGACAGCGCG
ATTTTCATGGAGGACTCCGAGGCGGATCTGAAGAGGAAGATCAAAAAGGC
TTTTTGCCCGCCAGAGGTGGTGGATGGAAACCCGATTGTGGATTACGTGA
AGCATATTGTGTTTGGGTACTACGGTAAGATTGTCATTGCGTTCCACGGC
GGGGAGAGTGAGGAGTACACGGAGTACGAAAAGTTCGAGGCGGATTACTT
GAGTGGCAAGATTCACCCAGGGGATCTCAAGCCGGCGGTAACGGTGGCGA
TTAACAGTATCTTGGAGCCGGTCCGTAAGCATTTTGAGACGGATGCGGAG
GCGAAAAAGCTGCTGGAGCAGGTGAAGAAGTTTAAGACGACGCGATAAAA
TTGGGGTTTAGGAGGAGAGAGGGAGGGGGCGTGAACGACGATGGCTACAG
ACAGTAGTTGACAGTCGGTTGAAAGCAAGAGATAGCAAGCGCGAAATAAA
AAAGACGCC
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protein sequence of NO03G04650.1

>NO03G04650.1-protein ID=NO03G04650.1-protein|Name=NO03G04650.1|organism=Nannochloropsis oceanica|type=polypeptide|length=428bp
MSVDQRFSVQATACFTVLEAPGVTQKTSSSSSSSSSSSSKPTNGSKISSS
IAIGSLVNISGSGKRGPSGLIEGKEYYVSTLPLDEKFTLARSVGEECIQE
EELRSLLEKKPHPVVYDGFEPSGRMHIAQGVMRAINVNKLTQCGCVFKFW
VADWFALLNNKMGGDLKKIQTVGKYMIEIWRAVGMDMRNVEFLWASEEIN
AHSNEYWSRVMDIARLNNLARIQRCCTIMGRKDTEEMSAAQVMYPCMQCA
DVFFLKADICQLGLDQRKVNMLAREYCDSVKIKFKPVILSHHMLMGLKEG
QEKMSKSDPDSAIFMEDSEADLKRKIKKAFCPPEVVDGNPIVDYVKHIVF
GYYGKIVIAFHGGESEEYTEYEKFEADYLSGKIHPGDLKPAVTVAINSIL
EPVRKHFETDAEAKKLLEQVKKFKTTR*
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mRNA from alignment at chr3:1331391..1333040-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO03G04650.1 ID=NO03G04650.1|Name=NO03G04650.1|organism=Nannochloropsis oceanica|type=mRNA|length=1650bp|location=Sequence derived from alignment at chr3:1331391..1333040- (Nannochloropsis oceanica)
AAACACAGTCCACCATGTCGGTCGACCAGCGGTTCTCAGTACAGGCCACG
GCATGCTTTACGGTCCTAGAGGCCCCAGGCGGTACGTAAATTGGTTGCTT
TCCCTCGCCTCCCTTCCCTCAGTTCACCTCCCCCCCTCCAATGCCTCCTA
TCCTGTGCGCCCATTCATTGAACCCTTGCACAAAGAAGTGCCGCAAGCCA
CATGCCGAAGTCATGCATGGCCTTGTACGCGTGGGAACTCCCTTTCTCTT
TATTTTTCAAGCCTTTCCTGTACATCTCATCATGACACGCCATCTATCCC
TTACTCCTCCAACCTACACTAGTCACGCAAAAAACCTCCTCCTCCTCGTC
CTCCTCGTCGTCGTCCTCATCCAAGCCTACAAATGGTAGCAAGATCTCTT
CCTCCATAGCAATCGGGTCACTTGTAAACATAAGCGGCAGTGGCAAGCGA
GGCCCTAGCGGGCTGATTGAAGGCAAGGAGTACTACGTTTCCACGTTGCC
TTTAGACGAGAAGTTCACCTTGGCCCGTAGCGTAGGGGAGGAATGCATTC
AAGAGGAGGAGCTACGATCTCTTCTGGAAAAGAAGCCGCATCCTGTCGTA
TATGATGGCTTTGAGCCGTCGGGGCGTATGCATATTGCGCAGGGGGTGAT
GCGTGCGATCAATGTGAATAAATTGACGCAGTGTGGGTGTGTGTTCAAGT
TTTGGGTGGCGGATTGGTTTGCGTTGTTGAATAACAAAATGGGGGGAGAC
TTAAAGAAGATTCAGACGGTGGGGAAGTACATGATAGAGATCTGGAGGGC
GGTGGGGATGGACATGAGAAATGTGGAGTTTTTGTGGGCCTCGGAAGAGA
TTAACGCACATTCGAATGAGTACTGGTCTAGGGTGATGGACATTGCCCGC
TTGAATAACCTGGCGAGAATTCAACGATGTTGTACGATCATGGGGAGGAA
GGACACGGAGGAGATGAGCGCGGCGCAAGTGATGTATCCCTGCATGCAGT
GCGCGGATGTGTTTTTTTTGAAAGCCGACATCTGTCAGTTGGGCCTCGAT
CAACGGAAGGTGAACATGCTGGCACGTGAGTATTGTGACAGTGTCAAGAT
AAAGTTCAAGCCGGTGATTTTGTCGCATCACATGTTGATGGGCCTGAAGG
AGGGGCAGGAGAAGATGAGTAAGTCAGACCCGGACAGCGCGATTTTCATG
GAGGACTCCGAGGCGGATCTGAAGAGGAAGATCAAAAAGGCTTTTTGCCC
GCCAGAGGTGGTGGATGGAAACCCGATTGTGGATTACGTGAAGCATATTG
TGTTTGGGTACTACGGTAAGATTGTCATTGCGTTCCACGGCGGGGAGAGT
GAGGAGTACACGGAGTACGAAAAGTTCGAGGCGGATTACTTGAGTGGCAA
GATTCACCCAGGGGATCTCAAGCCGGCGGTAACGGTGGCGATTAACAGTA
TCTTGGAGCCGGTCCGTAAGCATTTTGAGACGGATGCGGAGGCGAAAAAG
CTGCTGGAGCAGGTGAAGAAGTTTAAGACGACGCGATAAAATTGGGGTTT
AGGAGGAGAGAGGGAGGGGGCGTGAACGACGATGGCTACAGACAGTAGTT
GACAGTCGGTTGAAAGCAAGAGATAGCAAGCGCGAAATAAAAAAGACGCC
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Coding sequence (CDS) from alignment at chr3:1331391..1333040-

>NO03G04650.1 ID=NO03G04650.1|Name=NO03G04650.1|organism=Nannochloropsis oceanica|type=CDS|length=1284bp|location=Sequence derived from alignment at chr3:1331391..1333040- (Nannochloropsis oceanica)
ATGTCGGTCGACCAGCGGTTCTCAGTACAGGCCACGGCATGCTTTACGGT
CCTAGAGGCCCCAGGCGTCACGCAAAAAACCTCCTCCTCCTCGTCCTCCT
CGTCGTCGTCCTCATCCAAGCCTACAAATGGTAGCAAGATCTCTTCCTCC
ATAGCAATCGGGTCACTTGTAAACATAAGCGGCAGTGGCAAGCGAGGCCC
TAGCGGGCTGATTGAAGGCAAGGAGTACTACGTTTCCACGTTGCCTTTAG
ACGAGAAGTTCACCTTGGCCCGTAGCGTAGGGGAGGAATGCATTCAAGAG
GAGGAGCTACGATCTCTTCTGGAAAAGAAGCCGCATCCTGTCGTATATGA
TGGCTTTGAGCCGTCGGGGCGTATGCATATTGCGCAGGGGGTGATGCGTG
CGATCAATGTGAATAAATTGACGCAGTGTGGGTGTGTGTTCAAGTTTTGG
GTGGCGGATTGGTTTGCGTTGTTGAATAACAAAATGGGGGGAGACTTAAA
GAAGATTCAGACGGTGGGGAAGTACATGATAGAGATCTGGAGGGCGGTGG
GGATGGACATGAGAAATGTGGAGTTTTTGTGGGCCTCGGAAGAGATTAAC
GCACATTCGAATGAGTACTGGTCTAGGGTGATGGACATTGCCCGCTTGAA
TAACCTGGCGAGAATTCAACGATGTTGTACGATCATGGGGAGGAAGGACA
CGGAGGAGATGAGCGCGGCGCAAGTGATGTATCCCTGCATGCAGTGCGCG
GATGTGTTTTTTTTGAAAGCCGACATCTGTCAGTTGGGCCTCGATCAACG
GAAGGTGAACATGCTGGCACGTGAGTATTGTGACAGTGTCAAGATAAAGT
TCAAGCCGGTGATTTTGTCGCATCACATGTTGATGGGCCTGAAGGAGGGG
CAGGAGAAGATGAGTAAGTCAGACCCGGACAGCGCGATTTTCATGGAGGA
CTCCGAGGCGGATCTGAAGAGGAAGATCAAAAAGGCTTTTTGCCCGCCAG
AGGTGGTGGATGGAAACCCGATTGTGGATTACGTGAAGCATATTGTGTTT
GGGTACTACGGTAAGATTGTCATTGCGTTCCACGGCGGGGAGAGTGAGGA
GTACACGGAGTACGAAAAGTTCGAGGCGGATTACTTGAGTGGCAAGATTC
ACCCAGGGGATCTCAAGCCGGCGGTAACGGTGGCGATTAACAGTATCTTG
GAGCCGGTCCGTAAGCATTTTGAGACGGATGCGGAGGCGAAAAAGCTGCT
GGAGCAGGTGAAGAAGTTTAAGACGACGCGATAA
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Synonyms
Publications