NO03G04580.1, NO03G04580.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO03G04580.1
Unique NameNO03G04580.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1324
Alignment locationchr3:1318254..1319577 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:1318254..1319577 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO03G04580.1 vs.
Match: XP_005856360.1 (fumarylacetoacetate hydrolase domain-containing protein 1 [Nannochloropsis gaditana CCMP526]; EKU20000.1 fumarylacetoacetate hydrolase domain-containing protein 1 [Nannochloropsis gaditana CCMP526]; EWM29896.1 Fumarylacetoacetase [Nannochloropsis gaditana])

HSP 1 Score: 393.3 bits (1009), Expect = 5.200e-106
Identity = 186/221 (84.16%), Postives = 205/221 (92.76%), Query Frame = 0
Query:    4 AVAAVTAARSSLINHGKKIIGVGKNYALHIKEMGGQAPKAPVLFLKPTTSYVFEGTPIRLHPKIGVVHHEVELALVIDKKARKVRPENAMQFVGGYALAIDLTARDIQEEAKKQGLPWTVAKGQDYFCPISNMLSKAQIPDPDDVGIWLRVNDEPRQRSNTKHMVHRTAFLVSYISHLFTLEPGDVILTGTPEGVGPIKAGDTVTAGIEGLMQMRFAVEVD 225
            A  A +A R+SLINHGKKIIGVGKNYA+HIKEMGGQAPKAPVLFLKPTTSYVFEG+PIRL+PK+G VHHEVE+A+VIDK ARK+ PE A+QFVGGYALAIDLTARD+QEEAKKQGLPWTVAKGQD FCPISNM++KA +PDPD+VG+WL+VN EPRQRSNTKHM+H TAFLVSYISHLFTLEPGDVILTGTPEGVGPI  GDTVTAGIEGLMQM+F VE D
Sbjct:    2 ASLATSAIRASLINHGKKIIGVGKNYAMHIKEMGGQAPKAPVLFLKPTTSYVFEGSPIRLNPKVGTVHHEVEMAVVIDKIARKISPEMALQFVGGYALAIDLTARDVQEEAKKQGLPWTVAKGQDSFCPISNMIAKADVPDPDNVGLWLKVNGEPRQRSNTKHMIHPTAFLVSYISHLFTLEPGDVILTGTPEGVGPINVGDTVTAGIEGLMQMKFDVEAD 222          
The following BLAST results are available for this feature:
BLAST of NO03G04580.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005856360.15.200e-10684.16fumarylacetoacetate hydrolase domain-containing pr... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO03G04580NO03G04580Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO03G04580.1NO03G04580.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO03G04580.1.cds1NO03G04580.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO03G04580.1 ID=NO03G04580.1|Name=NO03G04580.1|organism=Nannochloropsis oceanica|type=mRNA|length=1324bp
ATGCATGTGTTGGGTGTGGTCAGGGCGCGCTTAGAGACGGCACAGTAGTA
TTGCACCCTGGCGAGGAAGCGGCGCGGAGCAAGAACGCCGCCTTCTTCGA
TTTGCTTTCCGCTTGACAAATTGAGGTACTTCTGATTGACACCACCTTTT
TTTCTTATCCCACGTACATACCCCACCACATCACGCAATCAAGTCTGCAT
AATCTTCCTGTTGTCTCGGTGCCGCTGTCGCTCCACCTCTAGCATCACAA
GCCCCTTCCCTGCCTCTCCTCCCCCTCTTCAAGCCGTCAACCCAGCCATG
GCACCGGCAGTAGCCGCCGTGACGGCCGCCCGGTCTTCCCTCATCAACCA
CGGCAAGAAAATCATCGGTGTCGGGAAAAATTACGCCCTCCATATCAAGG
AAATGGGGGGCCAAGCACCCAAGGCCCCCGTTCTGTTTCTCAAACCCACT
ACAAGTTATGTCTTTGAAGGCACTCCCATCCGTCTTCATCCCAAGATTGG
GGTCGTGCACCACGAGGTGGAACTCGCCCTGGTCATCGACAAGAAAGCTC
GAAAAGTCAGGCCCGAAAACGCCATGCAATTCGTGGGTGGGTACGCCCTT
GCAATCGACCTTACTGCTCGCGACATCCAAGAAGAGGCCAAGAAGCAAGG
GCTCCCGTGGACGGTAGCCAAGGGGCAAGATTACTTCTGTCCTATCTCCA
ACATGCTCTCCAAGGCTCAAATTCCCGATCCGGATGATGTGGGGATATGG
CTGCGTGTGAACGATGAGCCGCGTCAACGCTCGAATACGAAGCATATGGT
GCATCGGACTGCCTTCTTGGTTAGTTACATCTCGCATTTGTTCACGCTTG
AGCCAGGGGATGTGATTTTGACGGGAACTCCTGAGGGGGTGGGGCCAATA
AAGGCTGGAGATACAGTGACGGCTGGCATAGAGGGCTTGATGCAGATGAG
ATTTGCAGTGGAGGTGGATAGGGATGTATGAGGAGGGTAAAAAGGAAGGG
TGGGAGTAAATGAGGGAGGAGTCATGGCGGCGTATGCCTCCCTGTGAGCC
CTGTGAATTTAGCTCTCAGCAAGTAAACTAGAACAGTCGATGAATGGGTA
GAGAGAGTGCGTTTCAGCATTCATGCGTGCTTCTTGTCATGATCTACATT
TGGGGATAGAATTAGTAGTAGTGAGGTGTATATATATGCATATTTTCGTT
TGTTTTGTTTCTTCGTTCATGTGGATTGAAGGAGGACACGTATGCGATGT
GTCTTGACTGAAGTATACGCGGAGCGAGGAGTGAAGAAGAGAAGACAATT
AGAAGGAGATTATAATGATGATGA
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protein sequence of NO03G04580.1

>NO03G04580.1-protein ID=NO03G04580.1-protein|Name=NO03G04580.1|organism=Nannochloropsis oceanica|type=polypeptide|length=228bp
MAPAVAAVTAARSSLINHGKKIIGVGKNYALHIKEMGGQAPKAPVLFLKP
TTSYVFEGTPIRLHPKIGVVHHEVELALVIDKKARKVRPENAMQFVGGYA
LAIDLTARDIQEEAKKQGLPWTVAKGQDYFCPISNMLSKAQIPDPDDVGI
WLRVNDEPRQRSNTKHMVHRTAFLVSYISHLFTLEPGDVILTGTPEGVGP
IKAGDTVTAGIEGLMQMRFAVEVDRDV*
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mRNA from alignment at chr3:1318254..1319577+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO03G04580.1 ID=NO03G04580.1|Name=NO03G04580.1|organism=Nannochloropsis oceanica|type=mRNA|length=1324bp|location=Sequence derived from alignment at chr3:1318254..1319577+ (Nannochloropsis oceanica)
ATGCATGTGTTGGGTGTGGTCAGGGCGCGCTTAGAGACGGCACAGTAGTA TTGCACCCTGGCGAGGAAGCGGCGCGGAGCAAGAACGCCGCCTTCTTCGA TTTGCTTTCCGCTTGACAAATTGAGGTACTTCTGATTGACACCACCTTTT TTTCTTATCCCACGTACATACCCCACCACATCACGCAATCAAGTCTGCAT AATCTTCCTGTTGTCTCGGTGCCGCTGTCGCTCCACCTCTAGCATCACAA GCCCCTTCCCTGCCTCTCCTCCCCCTCTTCAAGCCGTCAACCCAGCCATG GCACCGGCAGTAGCCGCCGTGACGGCCGCCCGGTCTTCCCTCATCAACCA CGGCAAGAAAATCATCGGTGTCGGGAAAAATTACGCCCTCCATATCAAGG AAATGGGGGGCCAAGCACCCAAGGCCCCCGTTCTGTTTCTCAAACCCACT ACAAGTTATGTCTTTGAAGGCACTCCCATCCGTCTTCATCCCAAGATTGG GGTCGTGCACCACGAGGTGGAACTCGCCCTGGTCATCGACAAGAAAGCTC GAAAAGTCAGGCCCGAAAACGCCATGCAATTCGTGGGTGGGTACGCCCTT GCAATCGACCTTACTGCTCGCGACATCCAAGAAGAGGCCAAGAAGCAAGG GCTCCCGTGGACGGTAGCCAAGGGGCAAGATTACTTCTGTCCTATCTCCA ACATGCTCTCCAAGGCTCAAATTCCCGATCCGGATGATGTGGGGATATGG CTGCGTGTGAACGATGAGCCGCGTCAACGCTCGAATACGAAGCATATGGT GCATCGGACTGCCTTCTTGGTTAGTTACATCTCGCATTTGTTCACGCTTG AGCCAGGGGATGTGATTTTGACGGGAACTCCTGAGGGGGTGGGGCCAATA AAGGCTGGAGATACAGTGACGGCTGGCATAGAGGGCTTGATGCAGATGAG ATTTGCAGTGGAGGTGGATAGGGATGTATGAGGAGGGTAAAAAGGAAGGG TGGGAGTAAATGAGGGAGGAGTCATGGCGGCGTATGCCTCCCTGTGAGCC CTGTGAATTTAGCTCTCAGCAAGTAAACTAGAACAGTCGATGAATGGGTA GAGAGAGTGCGTTTCAGCATTCATGCGTGCTTCTTGTCATGATCTACATT TGGGGATAGAATTAGTAGTAGTGAGGTGTATATATATGCATATTTTCGTT TGTTTTGTTTCTTCGTTCATGTGGATTGAAGGAGGACACGTATGCGATGT GTCTTGACTGAAGTATACGCGGAGCGAGGAGTGAAGAAGAGAAGACAATT AGAAGGAGATTATAATGATGATGA
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Coding sequence (CDS) from alignment at chr3:1318254..1319577+

>NO03G04580.1 ID=NO03G04580.1|Name=NO03G04580.1|organism=Nannochloropsis oceanica|type=CDS|length=684bp|location=Sequence derived from alignment at chr3:1318254..1319577+ (Nannochloropsis oceanica)
ATGGCACCGGCAGTAGCCGCCGTGACGGCCGCCCGGTCTTCCCTCATCAA
CCACGGCAAGAAAATCATCGGTGTCGGGAAAAATTACGCCCTCCATATCA
AGGAAATGGGGGGCCAAGCACCCAAGGCCCCCGTTCTGTTTCTCAAACCC
ACTACAAGTTATGTCTTTGAAGGCACTCCCATCCGTCTTCATCCCAAGAT
TGGGGTCGTGCACCACGAGGTGGAACTCGCCCTGGTCATCGACAAGAAAG
CTCGAAAAGTCAGGCCCGAAAACGCCATGCAATTCGTGGGTGGGTACGCC
CTTGCAATCGACCTTACTGCTCGCGACATCCAAGAAGAGGCCAAGAAGCA
AGGGCTCCCGTGGACGGTAGCCAAGGGGCAAGATTACTTCTGTCCTATCT
CCAACATGCTCTCCAAGGCTCAAATTCCCGATCCGGATGATGTGGGGATA
TGGCTGCGTGTGAACGATGAGCCGCGTCAACGCTCGAATACGAAGCATAT
GGTGCATCGGACTGCCTTCTTGGTTAGTTACATCTCGCATTTGTTCACGC
TTGAGCCAGGGGATGTGATTTTGACGGGAACTCCTGAGGGGGTGGGGCCA
ATAAAGGCTGGAGATACAGTGACGGCTGGCATAGAGGGCTTGATGCAGAT
GAGATTTGCAGTGGAGGTGGATAGGGATGTATGA
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Synonyms
Publications