NO03G04560.1, NO03G04560.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO03G04560.1
Unique Name	NO03G04560.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	2180
Alignment location	chr3:1311242..1313421 +

Link to JBrowse

Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr3	genome	chr3:1311242..1313421 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

The following BLAST results are available for this feature:

BLAST of NO03G04560.1 vs.

BLAST of NO03G04560.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 0


Match Name	E-value	Identity	Description

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO03G04560	NO03G04560	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO03G04560.1	NO03G04560.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO03G04560.1.cds1	NO03G04560.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr3:1311242..1313421+
coding sequence from alignment at chr3:1311242..1313421+

mRNA sequence

>NO03G04560.1 ID=NO03G04560.1|Name=NO03G04560.1|organism=Nannochloropsis oceanica|type=mRNA|length=2180bp
GGGGCATCGGATGATGCCATGGGAGTACCCTGGCCCCCTTTTGCCCTGTT
GCATTGGGCATCACCGCTCTCTCAGCACACTTTGCCCTTCATAAGAACTG
GCACTTGACCAAAAAAGGCACCTTGCCTGCCCATTTTACATTTTTTCCAC
CACCAGACAGGATCCATGGCGCCTACTATTTGTAACCCCATCCTACCCAC
TTCAGCACGTACTCCACGGGGCGACGAACTTTTACGCGCACGTTGTCATC
ATTTGTGTGCCTTGGTCTGCGGAGTTGGAGTCGTGATCTTGAATAAGACG
ATTAAACTTCTTCAACAGATTTTCACGGCTCTGTCCCTCCCTTTTTTCCC
CTCCAAAAACACAGAAATGTCCCCGTCAACTGAGACTGCTAAAGCCAAGC
GACTGGATGTGGCCATCCGGAAGGATTCACCCAAGACACTGGAGGTGAAA
TGCGTTTTATGTCCACTGACTCATGGCTAGTCTTGGAATTTTCCCTCGAA
TATATCCTTGAAGACTTTGCGGGAAGCTGCGTTCCTTTGAGCCTTCGGTG
AAACAGGCGGTGACGAACGGTTGGTCCAGGTCGACATGGATTCATTTTAG
GGCCGACAACGGGGCTTTTAAGCGGTTCTGGCTTCTAGATCATGGGTTGG
AGTCACGGGAGGTGTCGGCTCACTGTGTTTAATGCCTCATCAATGGCCGG
AAAGAACCTGCTGCCTTCCGTAAAAGGAGGCGCAATGACAACCAGGCGGG
GAGGGGAGGAGGGAGGGAGGGAGAGAGGAGGAGGAAAGGGAGGAAGGGGA
GGAAAAGGAGGAAAAGGAGGCAGAGGACGAAGAGGAGGAGCGGGAAGATC
GAGAGGAGCAGCAGCAGCAGCAGCAGCAGCAGGAGGAGTAGGAGTAGGAG
GAACAGGAGGAGGGACAGGAGGGAGAGGAGGAGAGAGAGAAGTAGCAACA
GGTGTAGGAAGAAGAAGAGGAGTAGCACAACAGGAGGTGGAGGAGGAGCG
AGAGGAGCGGCAGCAGCAACAGCAACAGGAGGAGGAGGGAAAGGCAGCAG
GTGGAGCAAGAGGAGCAGCAGGAGGAAGAGGAGGAGGGGGGAGGGGAGGG
CATGGAAAGGGGGGAAGCGGCGGAGGCCCTGTGATCGTGAACCCGGAAGA
GGTCCAAGCTTTCATCAACGAGGGACGACGGCTTCTAAAGCTGGAGGGTT
CCCACATCCTGAAAGTGACGAGTTTGATCTCAGTGGAGAAACTCTTTCTC
CCGTACCTATACCATATCTTGCACGAGTATCACCTTAAAGGCCTGGCGGT
ACAACGGGGGATAGAGGAGAATTCCGGGATGCAAGCGGAGAACGGAGGGA
ATGTTTGCCATCGGGGTTTTTTAAATCGCTCCAGTCTGCAGGTGTCAACC
GCCATGAAGCGGCGGTTGACACCTGGGTACACATTGTTGAAGAAGGTGGC
GAATGGTAAACCGGAGATGGCCGAGGCAGCATGGGAGGCAGAATGTCTTG
ACTGGTTGGGCCGTCTGGGAGAGATGAGTCAGAATGATTCTTGTAAGGAC
TGAGTGGGAGGAAACATTCAGAATCTGAGACATTCGAAAGCATCGGGAGT
TTAATCGCCGGATTTCAGCGGATGGTGTCTCGATGACGGTCAACTTGAAA
ATGACGACGGAGAAACTAGAGCAGGACCGACAGCAGAGGCTGGAAAACCT
GCAGCCAGACAGAGATCCGTGCTTTGGATCGGTCCCGGTCGTGTCAAACG
TTTGACGGCACTGGACTCGCAGACAATGAAAATCAAAACTTTGACGCGAG
GAGAGTACAACGAGATGGGGCGGATCAAAACACTCAACGAAGATGGTCTC
TTGGGAGACTTTCCTCCACGATGCAAACAGTGCATTGCCAAACTCTCGCG
CGTTCGCTTCTTCTCTCATCTAAGATCCCACAATTGATCGTAATGTACAA
TCAGCTCGAGGTAAGCACTTCGAATGTGACAGCACGTCTCGATCAATCGT
GGGACAGTAGGTGCGAAAGAAGTGGGCACGCAAGAGCATGGCTGTGCATA
TATATCGGGGAAGCAGAAGCTTATGGATAGTTTCTTCGCTGGTTTGACGG
GGTCAGGGCAAACGTAGCCCGTCGTTGCATATGGGCCGGCTTCCTTCCAT
CAAAAAAGAGAGGGGCGATCTCGTTACCGT

protein sequence of NO03G04560.1

>NO03G04560.1-protein ID=NO03G04560.1-protein|Name=NO03G04560.1|organism=Nannochloropsis oceanica|type=polypeptide|length=304bp
MGWSHGRCRLTVFNASSMAGKNLLPSVKGGAMTTRRGGEEGGRERGGGKG
GRGGKGGKGGRGRRGGAGRSRGAAAAAAAAGGVGVGGTGGGTGGRGGERE
VATGVGRRRGVAQQEVEEEREERQQQQQQEEEGKAAGGARGAAGGRGGGG
RGGHGKGGSGGGPVIVNPEEVQAFINEGRRLLKLEGSHILKVTSLISVEK
LFLPYLYHILHEYHLKGLAVQRGIEENSGMQAENGGNVCHRGFLNRSSLQ
VSTAMKRRLTPGYTLLKKVANGKPEMAEAAWEAECLDWLGRLGEMSQNDS
CKD*

mRNA from alignment at chr3:1311242..1313421+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO03G04560.1 ID=NO03G04560.1|Name=NO03G04560.1|organism=Nannochloropsis oceanica|type=mRNA|length=2180bp|location=Sequence derived from alignment at chr3:1311242..1313421+ (Nannochloropsis oceanica)
GGGGCATCGGATGATGCCATGGGAGTACCCTGGCCCCCTTTTGCCCTGTT
GCATTGGGCATCACCGCTCTCTCAGCACACTTTGCCCTTCATAAGAACTG
GCACTTGACCAAAAAAGGCACCTTGCCTGCCCATTTTACATTTTTTCCAC
CACCAGACAGGATCCATGGCGCCTACTATTTGTAACCCCATCCTACCCAC
TTCAGCACGTACTCCACGGGGCGACGAACTTTTACGCGCACGTTGTCATC
ATTTGTGTGCCTTGGTCTGCGGAGTTGGAGTCGTGATCTTGAATAAGACG
ATTAAACTTCTTCAACAGATTTTCACGGCTCTGTCCCTCCCTTTTTTCCC
CTCCAAAAACACAGAAATGTCCCCGTCAACTGAGACTGCTAAAGCCAAGC
GACTGGATGTGGCCATCCGGAAGGATTCACCCAAGACACTGGAGGTGAAA
TGCGTTTTATGTCCACTGACTCATGGCTAGTCTTGGAATTTTCCCTCGAA
TATATCCTTGAAGACTTTGCGGGAAGCTGCGTTCCTTTGAGCCTTCGGTG
AAACAGGCGGTGACGAACGGTTGGTCCAGGTCGACATGGATTCATTTTAG
GGCCGACAACGGGGCTTTTAAGCGGTTCTGGCTTCTAGATCATGGGTTGG
AGTCACGGGAGGTGTCGGCTCACTGTGTTTAATGCCTCATCAATGGCCGG
AAAGAACCTGCTGCCTTCCGTAAAAGGAGGCGCAATGACAACCAGGCGGG
GAGGGGAGGAGGGAGGGAGGGAGAGAGGAGGAGGAAAGGGAGGAAGGGGA
GGAAAAGGAGGAAAAGGAGGCAGAGGACGAAGAGGAGGAGCGGGAAGATC
GAGAGGAGCAGCAGCAGCAGCAGCAGCAGCAGGAGGAGTAGGAGTAGGAG
GAACAGGAGGAGGGACAGGAGGGAGAGGAGGAGAGAGAGAAGTAGCAACA
GGTGTAGGAAGAAGAAGAGGAGTAGCACAACAGGAGGTGGAGGAGGAGCG
AGAGGAGCGGCAGCAGCAACAGCAACAGGAGGAGGAGGGAAAGGCAGCAG
GTGGAGCAAGAGGAGCAGCAGGAGGAAGAGGAGGAGGGGGGAGGGGAGGG
CATGGAAAGGGGGGAAGCGGCGGAGGCCCTGTGATCGTGAACCCGGAAGA
GGTCCAAGCTTTCATCAACGAGGGACGACGGCTTCTAAAGCTGGAGGGTT
CCCACATCCTGAAAGTGACGAGTTTGATCTCAGTGGAGAAACTCTTTCTC
CCGTACCTATACCATATCTTGCACGAGTATCACCTTAAAGGCCTGGCGGT
ACAACGGGGGATAGAGGAGAATTCCGGGATGCAAGCGGAGAACGGAGGGA
ATGTTTGCCATCGGGGTTTTTTAAATCGCTCCAGTCTGCAGGTGTCAACC
GCCATGAAGCGGCGGTTGACACCTGGGTACACATTGTTGAAGAAGGTGGC
GAATGGTAAACCGGAGATGGCCGAGGCAGCATGGGAGGCAGAATGTCTTG
ACTGGTTGGGCCGTCTGGGAGAGATGAGTCAGAATGATTCTTGTAAGGAC
TGAGTGGGAGGAAACATTCAGAATCTGAGACATTCGAAAGCATCGGGAGT
TTAATCGCCGGATTTCAGCGGATGGTGTCTCGATGACGGTCAACTTGAAA
ATGACGACGGAGAAACTAGAGCAGGACCGACAGCAGAGGCTGGAAAACCT
GCAGCCAGACAGAGATCCGTGCTTTGGATCGGTCCCGGTCGTGTCAAACG
TTTGACGGCACTGGACTCGCAGACAATGAAAATCAAAACTTTGACGCGAG
GAGAGTACAACGAGATGGGGCGGATCAAAACACTCAACGAAGATGGTCTC
TTGGGAGACTTTCCTCCACGATGCAAACAGTGCATTGCCAAACTCTCGCG
CGTTCGCTTCTTCTCTCATCTAAGATCCCACAATTGATCGTAATGTACAA
TCAGCTCGAGGTAAGCACTTCGAATGTGACAGCACGTCTCGATCAATCGT
GGGACAGTAGGTGCGAAAGAAGTGGGCACGCAAGAGCATGGCTGTGCATA
TATATCGGGGAAGCAGAAGCTTATGGATAGTTTCTTCGCTGGTTTGACGG
GGTCAGGGCAAACGTAGCCCGTCGTTGCATATGGGCCGGCTTCCTTCCAT
CAAAAAAGAGAGGGGCGATCTCGTTACCGT

Coding sequence (CDS) from alignment at chr3:1311242..1313421+

>NO03G04560.1 ID=NO03G04560.1|Name=NO03G04560.1|organism=Nannochloropsis oceanica|type=CDS|length=912bp|location=Sequence derived from alignment at chr3:1311242..1313421+ (Nannochloropsis oceanica)
ATGGGTTGGAGTCACGGGAGGTGTCGGCTCACTGTGTTTAATGCCTCATC
AATGGCCGGAAAGAACCTGCTGCCTTCCGTAAAAGGAGGCGCAATGACAA
CCAGGCGGGGAGGGGAGGAGGGAGGGAGGGAGAGAGGAGGAGGAAAGGGA
GGAAGGGGAGGAAAAGGAGGAAAAGGAGGCAGAGGACGAAGAGGAGGAGC
GGGAAGATCGAGAGGAGCAGCAGCAGCAGCAGCAGCAGCAGGAGGAGTAG
GAGTAGGAGGAACAGGAGGAGGGACAGGAGGGAGAGGAGGAGAGAGAGAA
GTAGCAACAGGTGTAGGAAGAAGAAGAGGAGTAGCACAACAGGAGGTGGA
GGAGGAGCGAGAGGAGCGGCAGCAGCAACAGCAACAGGAGGAGGAGGGAA
AGGCAGCAGGTGGAGCAAGAGGAGCAGCAGGAGGAAGAGGAGGAGGGGGG
AGGGGAGGGCATGGAAAGGGGGGAAGCGGCGGAGGCCCTGTGATCGTGAA
CCCGGAAGAGGTCCAAGCTTTCATCAACGAGGGACGACGGCTTCTAAAGC
TGGAGGGTTCCCACATCCTGAAAGTGACGAGTTTGATCTCAGTGGAGAAA
CTCTTTCTCCCGTACCTATACCATATCTTGCACGAGTATCACCTTAAAGG
CCTGGCGGTACAACGGGGGATAGAGGAGAATTCCGGGATGCAAGCGGAGA
ACGGAGGGAATGTTTGCCATCGGGGTTTTTTAAATCGCTCCAGTCTGCAG
GTGTCAACCGCCATGAAGCGGCGGTTGACACCTGGGTACACATTGTTGAA
GAAGGTGGCGAATGGTAAACCGGAGATGGCCGAGGCAGCATGGGAGGCAG
AATGTCTTGACTGGTTGGGCCGTCTGGGAGAGATGAGTCAGAATGATTCT
TGTAAGGACTGA

Synonyms

Publications