NO03G04500.1, NO03G04500.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO03G04500.1
Unique NameNO03G04500.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2147
Alignment locationchr3:1292795..1295482 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:1292795..1295482 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO03G04500.1 vs.
Match: EWM29882.1 (40s ribosomal protein s4 [Nannochloropsis gaditana])

HSP 1 Score: 502.3 bits (1292), Expect = 9.100e-139
Identity = 243/258 (94.19%), Postives = 253/258 (98.06%), Query Frame = 0 
Query:    1 MARGPKKHLKRVNAPRHWMLSKMDGIFAPRPSTGPHKLRESLPLILILRNRLKYALTKAEANAICMQKLVKVDGKVRTDLNYPAGFMDVVSIEKSGDEFRLLYDPKGRFYLQRLEEGSEERNFKLCRVNKNLMSANKIPYLVTHDGRTLRYPDPLIKVDDTVKVDVRTGKILDFIKFDLGNLVYLTRGHNAGRVGVIQHIERHPGSFDIITVKDAQGHTFATRRQNVFVIGVGNKPMVSLPKQKGIKLSIVEERNARR 259
            MARGPKKHLKRVNAPRHWMLSKMDGIFAPRPSTGPHKLRESLPLILILRNRLKYALTKAEANAICMQKLVKVDGKVRTDLN+PAGFMDV++IEKSGDEFRLLYD KGRFYLQRLEEGSEERNFKLCRVNKN MSANKIPY+VTHDGRT+RYPDPLIK+DDTVKVD+RTGKILDFIKFDLGNLVYLTRGHN GRVG+IQHIERHPGSFDIITVKDAQGHTFATRRQNVFVIG GNKPMVSLPK KGIKLSIVEER+AR+
Sbjct:    1 MARGPKKHLKRVNAPRHWMLSKMDGIFAPRPSTGPHKLRESLPLILILRNRLKYALTKAEANAICMQKLVKVDGKVRTDLNFPAGFMDVITIEKSGDEFRLLYDVKGRFYLQRLEEGSEERNFKLCRVNKNEMSANKIPYIVTHDGRTIRYPDPLIKMDDTVKVDIRTGKILDFIKFDLGNLVYLTRGHNTGRVGMIQHIERHPGSFDIITVKDAQGHTFATRRQNVFVIGQGNKPMVSLPKGKGIKLSIVEERSARK 258
The following BLAST results are available for this feature:
BLAST of NO03G04500.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29882.19.100e-13994.1940s ribosomal protein s4 [Nannochloropsis gaditana... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO03G04500NO03G04500Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO03G04500.1NO03G04500.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO03G04500.1.cds1NO03G04500.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO03G04500.1.cds2NO03G04500.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO03G04500.1 ID=NO03G04500.1|Name=NO03G04500.1|organism=Nannochloropsis oceanica|type=mRNA|length=2147bp
GAGCACGATGCATGATCATGGTGGTGAGCGGATTGTGGGGGTGTCTTTAT
ATTCACAGTCATCGAGCCATGCCCCGACCAAGAACCCAATCTGATCCATG
GAGAATCACACGGACAACCTAAGCAAGTGAGTGAAGCGACCGACCGGACC
GATCACTTGTGGGCGATGGATCGACGATCGAAGGTCGCACAGGCCAAACG
CCTCATTATGCTTGGCTCCCCCGCTCTCCGCCTCTCCTCCCCGTCCACAC
AAGCGATGGCCCTCCGCGGTGCCCTTTTTCTTCTTCCCTATCACGCCACC
CATGCTCGCTACCATTTCCCAATCAAGTCGGCACTGTTTTCTTTGAGCCC
AGGTGTGGGCTTGCATGGAGTGGAGAAGCTGTGGTGGTGGTGCCTTCATC
ACAGCCATTTCTCTTGTCACCAGCCAACTCTCTGCAACTCCCATCATCAT
CCACCCTTCTTCCATGCCTCATTGTTTCTCATGCCCTTCCTGCCGTACAT
CAACCCCACCAACACAATCACAGGAGAGCGCTCTTCTTCATTGTTTGTCT
CGCCTTAGTGAATCATGGCGCGCGGCCCGAAGAAGCACCTCAAGCGGGTC
AATGCCCCCCGGCATTGGATGCTGTCCAAGATGGATGGCATCTTTGCCCC
CCGTCCCTCCACGGGCCCTCACAAGCTCCGTGAATCCCTGCCTCTCATTC
TCATTCTCCGCAACCGTCTTAAGTATGCCTTGACCAAGGCAGAGGCTAAT
GCGATTTGCATGCAGAAGCTAGTGAAGGTTGATGGGAAGGTCCGCACGGA
CCTGAACTACCCCGCTGGCTTCATGGACGTCGTCTCGATTGAGAAGAGCG
GGGACGAGTTCCGCCTCCTCTACGACCCGAAGGGGCGTTTCTACCTGCAA
CGGTTGGAGGAGGGCAGCGAGGAGAGGAATTTCAAGCTTTGCCGAGTGAA
CAAGAACTTGATGTCTGCCAACAAAATCCCCTACCTGGTGACTCACGACG
GTCGTACTCTGCGTTACCCGGACCCCCTCATTAAGGTGGACGACACGGTG
AAGGTTGATGTCCGCACGGGCAAGATTTTGGACTTCATTAAATTCGACTT
GGGCAATCTGGTGTACCTGACCCGAGGGCACAACGCGGGGAGAGTGGGAG
TGATCCAGCACATTGAGCGGCACCCGGGCTCGTTCGATATCATCACGGTG
AAGGACGCGCAGGGCCACACCTTTGCCACGCGTCGACAGAATGTATTTGT
GATTGGCGTAGGGAACAAGCCGATGGTGTCTCTGCCCAAGCAGAAGGGTA
TCAAGCTCTCGATCGTGGAGGAGCGCAATGCGCGACGTGCGCATTAAGTC
GTGAGAGGAAGGGAAGGAAGAAGGAAGGAACGAGGGAGTGAGGATGTGCG
GACGTGAGCCTCTGTTGTGGATGTGAGCGTCTGTAGGTTTCTCGATTTGT
TCTTCAAGGTGCTCTGGAGGAGAAAGGAGGGAGAGAGGGAGCGATGTCAT
CTCCCGAACTTTCCTTTCTTATCTTCTGGCCTTCTAGCGCGAATTTCTCT
CGATAGGGTGAAGAGGGAAGAGGCAATCATGCCAGGGGGAAGACCCCGAA
CCAAAACTCACAAACACATGAAACCAAAACCACCAAAAAAGGAGAAAAGA
AGAAGAAAGGACGAGAACGCCACAAATCGCCGTTGCAGAGCAAGTCGGTT
CATTCATCTTATTTTTGATCAGCTGAAGTGCTGATGTAGTAGCATTGGTT
CTGCTACTCAGAGTCTGCCGGGTGTTCTCGCAGCCCTCTTTTCTTTAGTT
TTTCTCTGATGCCCTCCATCCCCTCCTCAATCGGTTTCCATTTTGGTCAT
TTACCTATTTTCACACATTGATAAACTTTACTCCACCCAGCCTTACAGGT
CCTTGAAGAACGACTCGGCAGCCGTCATCCGCATTTTTTTACTGCCCTTC
TGCTGCCCTCCTTTCTTCCCGGGCTCTTGCTCCTCACTGCTGCTGCTACT
GGCGCTATTGCCACCTGCGCCGTCCTCATCCTCTCCCTCCTCTCCATTTT
CATCACCTTTATCATCTTCGTCCTCGTCCTCTTCATCCTCTTCATCATCA
CTTCCACTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCT
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protein sequence of NO03G04500.1

>NO03G04500.1-protein ID=NO03G04500.1-protein|Name=NO03G04500.1|organism=Nannochloropsis oceanica|type=polypeptide|length=261bp
MARGPKKHLKRVNAPRHWMLSKMDGIFAPRPSTGPHKLRESLPLILILRN
RLKYALTKAEANAICMQKLVKVDGKVRTDLNYPAGFMDVVSIEKSGDEFR
LLYDPKGRFYLQRLEEGSEERNFKLCRVNKNLMSANKIPYLVTHDGRTLR
YPDPLIKVDDTVKVDVRTGKILDFIKFDLGNLVYLTRGHNAGRVGVIQHI
ERHPGSFDIITVKDAQGHTFATRRQNVFVIGVGNKPMVSLPKQKGIKLSI
VEERNARRAH*
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mRNA from alignment at chr3:1292795..1295482+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO03G04500.1 ID=NO03G04500.1|Name=NO03G04500.1|organism=Nannochloropsis oceanica|type=mRNA|length=2688bp|location=Sequence derived from alignment at chr3:1292795..1295482+ (Nannochloropsis oceanica)
GAGCACGATGCATGATCATGGTGGTGAGCGGATTGTGGGGGTGTCTTTAT
ATTCACAGTCATCGAGCCATGCCCCGACCAAGAACCCAATCTGATCCATG
GAGAATCACACGGACAACCTAAGCAAGTGAGTGAAGCGACCGACCGGACC
GATCACTTGTGGGCGATGGATCGACGATCGAAGGTCGCACAGGCCAAACG
CCTCATTATGCTTGGCTCCCCCGCTCTCCGCCTCTCCTCCCCGTCCACAC
AAGCGATGGCCCTCCGCGGTGCCCTTTTTCTTCTTCCCTATCACGCCACC
CATGCTCGCTACCATTTCCCAATCAAGTCGGCACTGTTTTCTTTGAGCCC
AGGTGTGGGCTTGCATGGAGTGGAGAAGCTGTGGTGGTGGTGCCTTCATC
ACAGCCATTTCTCTTGTCACCAGCCAACTCTCTGCAACTCCCATCATCAT
CCACCCTTCTTCCATGCCTCATTGTTTCTCATGCCCTTCCTGCCGTACAT
CAACCCCACCAACACAATCACAGGAGAGCGCTCTTCTTCATTGTTTGTCT
CGCCTTAGTGAATCATGGTACGTTTTGGGTCGTCGCGGAAGGGAGGAGGA
GGGAGGGGGGGAGGGGGGAAGGGGAGGTGGAAGAAAAAAAGGGCGTGATG
TATGTCTGTCGGCCAACGTTGTCCCGCTTGTTCACGATGGTCAACGTTCC
TGTGCAATGTAAGTGCATAGCTTTTAAAGGGACGGAGGGGTAAGTGCTGG
TCCTTTCATCGCAGGTGCGGAGAGAGACAGCAGCGTCCGTCAGGACACGA
GAAGAAATGAAAGGTTCGGCCACTTGCTTGGATGGTGAGATGCTTTGTCC
CGGCTGCGCAGCTTGGAACCGGCGATTGCTGCCAAACCCCGTGTCCTGAT
GACGAGACAGACACGCAGGCTCAGGGATGGGGAAGAGCTAGCCGGTCTAA
TCTCTCTGGGTGTGGACATCCTGCTGCCAGAGGCGGACGGATGATTAGCA
TAGGGACCGCAATGACAGGGATGACCTCTTTCTTGTTTTTCTCTATAAAC
CCATCACTCATCCCCTCCCTCCTTCCCTCCTTCCCTCCTTCCTTGCCTCC
CACCTCAGGCGCGCGGCCCGAAGAAGCACCTCAAGCGGGTCAATGCCCCC
CGGCATTGGATGCTGTCCAAGATGGATGGCATCTTTGCCCCCCGTCCCTC
CACGGGCCCTCACAAGCTCCGTGAATCCCTGCCTCTCATTCTCATTCTCC
GCAACCGTCTTAAGTATGCCTTGACCAAGGCAGAGGCTAATGCGATTTGC
ATGCAGAAGCTAGTGAAGGTTGATGGGAAGGTCCGCACGGACCTGAACTA
CCCCGCTGGCTTCATGGACGTCGTCTCGATTGAGAAGAGCGGGGACGAGT
TCCGCCTCCTCTACGACCCGAAGGGGCGTTTCTACCTGCAACGGTTGGAG
GAGGGCAGCGAGGAGAGGAATTTCAAGCTTTGCCGAGTGAACAAGAACTT
GATGTCTGCCAACAAAATCCCCTACCTGGTGACTCACGACGGTCGTACTC
TGCGTTACCCGGACCCCCTCATTAAGGTGGACGACACGGTGAAGGTTGAT
GTCCGCACGGGCAAGATTTTGGACTTCATTAAATTCGACTTGGGCAATCT
GGTGTACCTGACCCGAGGGCACAACGCGGGGAGAGTGGGAGTGATCCAGC
ACATTGAGCGGCACCCGGGCTCGTTCGATATCATCACGGTGAAGGACGCG
CAGGGCCACACCTTTGCCACGCGTCGACAGAATGTATTTGTGATTGGCGT
AGGGAACAAGCCGATGGTGTCTCTGCCCAAGCAGAAGGGTATCAAGCTCT
CGATCGTGGAGGAGCGCAATGCGCGACGTGCGCATTAAGTCGTGAGAGGA
AGGGAAGGAAGAAGGAAGGAACGAGGGAGTGAGGATGTGCGGACGTGAGC
CTCTGTTGTGGATGTGAGCGTCTGTAGGTTTCTCGATTTGTTCTTCAAGG
TGCTCTGGAGGAGAAAGGAGGGAGAGAGGGAGCGATGTCATCTCCCGAAC
TTTCCTTTCTTATCTTCTGGCCTTCTAGCGCGAATTTCTCTCGATAGGGT
GAAGAGGGAAGAGGCAATCATGCCAGGGGGAAGACCCCGAACCAAAACTC
ACAAACACATGAAACCAAAACCACCAAAAAAGGAGAAAAGAAGAAGAAAG
GACGAGAACGCCACAAATCGCCGTTGCAGAGCAAGTCGGTTCATTCATCT
TATTTTTGATCAGCTGAAGTGCTGATGTAGTAGCATTGGTTCTGCTACTC
AGAGTCTGCCGGGTGTTCTCGCAGCCCTCTTTTCTTTAGTTTTTCTCTGA
TGCCCTCCATCCCCTCCTCAATCGGTTTCCATTTTGGTCATTTACCTATT
TTCACACATTGATAAACTTTACTCCACCCAGCCTTACAGGTCCTTGAAGA
ACGACTCGGCAGCCGTCATCCGCATTTTTTTACTGCCCTTCTGCTGCCCT
CCTTTCTTCCCGGGCTCTTGCTCCTCACTGCTGCTGCTACTGGCGCTATT
GCCACCTGCGCCGTCCTCATCCTCTCCCTCCTCTCCATTTTCATCACCTT
TATCATCTTCGTCCTCGTCCTCTTCATCCTCTTCATCATCACTTCCACTG
CTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCT
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Coding sequence (CDS) from alignment at chr3:1292795..1295482+

>NO03G04500.1 ID=NO03G04500.1|Name=NO03G04500.1|organism=Nannochloropsis oceanica|type=CDS|length=783bp|location=Sequence derived from alignment at chr3:1292795..1295482+ (Nannochloropsis oceanica)
ATGGCGCGCGGCCCGAAGAAGCACCTCAAGCGGGTCAATGCCCCCCGGCA
TTGGATGCTGTCCAAGATGGATGGCATCTTTGCCCCCCGTCCCTCCACGG
GCCCTCACAAGCTCCGTGAATCCCTGCCTCTCATTCTCATTCTCCGCAAC
CGTCTTAAGTATGCCTTGACCAAGGCAGAGGCTAATGCGATTTGCATGCA
GAAGCTAGTGAAGGTTGATGGGAAGGTCCGCACGGACCTGAACTACCCCG
CTGGCTTCATGGACGTCGTCTCGATTGAGAAGAGCGGGGACGAGTTCCGC
CTCCTCTACGACCCGAAGGGGCGTTTCTACCTGCAACGGTTGGAGGAGGG
CAGCGAGGAGAGGAATTTCAAGCTTTGCCGAGTGAACAAGAACTTGATGT
CTGCCAACAAAATCCCCTACCTGGTGACTCACGACGGTCGTACTCTGCGT
TACCCGGACCCCCTCATTAAGGTGGACGACACGGTGAAGGTTGATGTCCG
CACGGGCAAGATTTTGGACTTCATTAAATTCGACTTGGGCAATCTGGTGT
ACCTGACCCGAGGGCACAACGCGGGGAGAGTGGGAGTGATCCAGCACATT
GAGCGGCACCCGGGCTCGTTCGATATCATCACGGTGAAGGACGCGCAGGG
CCACACCTTTGCCACGCGTCGACAGAATGTATTTGTGATTGGCGTAGGGA
ACAAGCCGATGGTGTCTCTGCCCAAGCAGAAGGGTATCAAGCTCTCGATC
GTGGAGGAGCGCAATGCGCGACGTGCGCATTAA
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Synonyms
Publications