NO03G04460.1, NO03G04460.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO03G04460.1
Unique NameNO03G04460.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1158
Alignment locationchr3:1280472..1281629 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:1280472..1281629 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO03G04460.1 vs.
Match: EWM29878.1 (WD40-repeat-containing domain protein [Nannochloropsis gaditana])

HSP 1 Score: 286.2 bits (731), Expect = 1.500e-73
Identity = 149/258 (57.75%), Postives = 192/258 (74.42%), Query Frame = 0 
Query:    1 MQNDTRFFDEASYLSQIREEALTQESTIFHTAHCPQNRFLLASSNQGRLAIWDLSSYLFPKGPSSSLSSPSFYSSTSYPIASSSSYPLVLQGFQRQLHLNQARLYSAELRRKGYPCLSLQVSHHAINHILFLGQDTAQPLLVLAGDDGIYSWPWKTILNLLPRTCDEEDGVEG--TDNEPCSS-TTINIGPPSSILKALPSQKAFPFLTESNQITSSLPPSSSSSS--IFSACGDALVRNWDIETQQCTSLLIGHTGY 254
            M +D+ FFD+A+Y+S IR+EA T+E+TIFHTAHCPQNR+LLASSN+GR+AIWDLS YLFP   +S L++       S   AS +S PL+ +GF R L   + R++ A LRRKG+PCLS+QVS  AINH++FLG+ +  PLLVLAGDDGIY WPW  IL LL +   E+ G++   T   P +S  T ++G PS++LKALPSQ+A+PFLTESNQ+  S   SSS+S    FSACGDALVR WD+ETQ+C S+LIGHTG+
Sbjct:   57 MPDDSHFFDDAAYISHIRDEAATKEATIFHTAHCPQNRYLLASSNKGRIAIWDLSFYLFPAASASLLTT-----CPSLSFASRAS-PLLTRGFSRHLRQYECRMFPAALRRKGFPCLSIQVSERAINHVMFLGEGSTSPLLVLAGDDGIYVWPWAHILKLLSQAIGEDGGMDQDCTQGIPGNSCITQDLGAPSALLKALPSQEAWPFLTESNQVAPSFHSSSSTSPSVCFSACGDALVRQWDLETQKCASVLIGHTGF 308
The following BLAST results are available for this feature:
BLAST of NO03G04460.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29878.11.500e-7357.75WD40-repeat-containing domain protein [Nannochloro... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO03G04460NO03G04460Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO03G04460.1NO03G04460.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO03G04460.1.cds1NO03G04460.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO03G04460.1 ID=NO03G04460.1|Name=NO03G04460.1|organism=Nannochloropsis oceanica|type=mRNA|length=1158bp
ATGCAGAACGACACCCGCTTCTTCGATGAGGCTTCCTACCTTTCCCAAAT
TCGAGAGGAGGCTTTGACGCAAGAATCGACAATCTTCCACACTGCACACT
GCCCACAAAATCGCTTCCTTCTCGCTTCTTCCAATCAAGGCCGTCTCGCT
ATTTGGGACTTGTCCTCCTACCTCTTCCCAAAAGGGCCCTCCTCCTCCTT
GTCCTCGCCCTCCTTCTACAGTTCTACTTCCTATCCGATTGCTTCCTCCT
CCTCTTATCCCTTAGTATTGCAAGGATTCCAGCGCCAGCTGCATCTCAAC
CAAGCGCGCCTCTACTCTGCAGAATTACGTCGGAAAGGCTACCCCTGTCT
GAGCCTGCAAGTCTCACATCATGCCATCAATCATATCCTGTTTCTTGGGC
AAGACACTGCTCAGCCTTTGTTGGTCCTTGCGGGGGACGATGGCATTTAC
TCTTGGCCATGGAAAACAATTCTGAATCTCCTGCCCCGCACGTGTGATGA
GGAGGACGGGGTCGAGGGGACAGACAATGAGCCATGCTCTTCGACAACCA
TAAACATCGGTCCTCCTTCCTCCATTCTCAAAGCCCTCCCCTCGCAAAAA
GCCTTCCCATTCCTCACGGAATCCAACCAAATCACTTCCTCCCTTCCGCC
CTCTTCCTCCTCTTCCTCAATCTTTAGTGCATGCGGTGACGCCCTTGTTC
GCAATTGGGATATCGAAACACAACAATGCACTTCTTTGCTGATAGGACAT
ACAGGTTATGTTCACGCCGTCAAGAGCTTAGGCATTGAAACGACAGCACC
AGGGGTTGTAGTCTCGGGGGGGGAAGATGGGATGGTGGGGGTGTGGGATG
TGAGGACTGGTGGTGGAGGCAAGAAGGGTAAAGGAGGGAAAGGAGGGGGT
TCATTGATCAGGATGATGGATGGCTGGGCATCGGCGGGGGTGATCAGCAG
TAGTAACAGAAGTAGTAGCAGCAGCGACAAGGAAGGACGGAGCCAGGCTC
CGTCTTGGGTGGCCTCCTTGGATGTGGATCGAGGAGGGAATTTTTTGGTT
GCAGGAGGAGGGGTGGAAGGAGGAGATGGAGGAGGAAGAGGGGGGGCAAC
GGGGGGGTACCGTTTGGGTACTTATCTGTTTTTCATTTGCCGAGTTTTTC
GTTGGTGA
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protein sequence of NO03G04460.1

>NO03G04460.1-protein ID=NO03G04460.1-protein|Name=NO03G04460.1|organism=Nannochloropsis oceanica|type=polypeptide|length=386bp
MQNDTRFFDEASYLSQIREEALTQESTIFHTAHCPQNRFLLASSNQGRLA
IWDLSSYLFPKGPSSSLSSPSFYSSTSYPIASSSSYPLVLQGFQRQLHLN
QARLYSAELRRKGYPCLSLQVSHHAINHILFLGQDTAQPLLVLAGDDGIY
SWPWKTILNLLPRTCDEEDGVEGTDNEPCSSTTINIGPPSSILKALPSQK
AFPFLTESNQITSSLPPSSSSSSIFSACGDALVRNWDIETQQCTSLLIGH
TGYVHAVKSLGIETTAPGVVVSGGEDGMVGVWDVRTGGGGKKGKGGKGGG
SLIRMMDGWASAGVISSSNRSSSSSDKEGRSQAPSWVASLDVDRGGNFLV
AGGGVEGGDGGGRGGATGGYRLGTYLFFICRVFRW*
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mRNA from alignment at chr3:1280472..1281629+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO03G04460.1 ID=NO03G04460.1|Name=NO03G04460.1|organism=Nannochloropsis oceanica|type=mRNA|length=1158bp|location=Sequence derived from alignment at chr3:1280472..1281629+ (Nannochloropsis oceanica)
ATGCAGAACGACACCCGCTTCTTCGATGAGGCTTCCTACCTTTCCCAAAT
TCGAGAGGAGGCTTTGACGCAAGAATCGACAATCTTCCACACTGCACACT
GCCCACAAAATCGCTTCCTTCTCGCTTCTTCCAATCAAGGCCGTCTCGCT
ATTTGGGACTTGTCCTCCTACCTCTTCCCAAAAGGGCCCTCCTCCTCCTT
GTCCTCGCCCTCCTTCTACAGTTCTACTTCCTATCCGATTGCTTCCTCCT
CCTCTTATCCCTTAGTATTGCAAGGATTCCAGCGCCAGCTGCATCTCAAC
CAAGCGCGCCTCTACTCTGCAGAATTACGTCGGAAAGGCTACCCCTGTCT
GAGCCTGCAAGTCTCACATCATGCCATCAATCATATCCTGTTTCTTGGGC
AAGACACTGCTCAGCCTTTGTTGGTCCTTGCGGGGGACGATGGCATTTAC
TCTTGGCCATGGAAAACAATTCTGAATCTCCTGCCCCGCACGTGTGATGA
GGAGGACGGGGTCGAGGGGACAGACAATGAGCCATGCTCTTCGACAACCA
TAAACATCGGTCCTCCTTCCTCCATTCTCAAAGCCCTCCCCTCGCAAAAA
GCCTTCCCATTCCTCACGGAATCCAACCAAATCACTTCCTCCCTTCCGCC
CTCTTCCTCCTCTTCCTCAATCTTTAGTGCATGCGGTGACGCCCTTGTTC
GCAATTGGGATATCGAAACACAACAATGCACTTCTTTGCTGATAGGACAT
ACAGGTTATGTTCACGCCGTCAAGAGCTTAGGCATTGAAACGACAGCACC
AGGGGTTGTAGTCTCGGGGGGGGAAGATGGGATGGTGGGGGTGTGGGATG
TGAGGACTGGTGGTGGAGGCAAGAAGGGTAAAGGAGGGAAAGGAGGGGGT
TCATTGATCAGGATGATGGATGGCTGGGCATCGGCGGGGGTGATCAGCAG
TAGTAACAGAAGTAGTAGCAGCAGCGACAAGGAAGGACGGAGCCAGGCTC
CGTCTTGGGTGGCCTCCTTGGATGTGGATCGAGGAGGGAATTTTTTGGTT
GCAGGAGGAGGGGTGGAAGGAGGAGATGGAGGAGGAAGAGGGGGGGCAAC
GGGGGGGTACCGTTTGGGTACTTATCTGTTTTTCATTTGCCGAGTTTTTC
GTTGGTGA
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Coding sequence (CDS) from alignment at chr3:1280472..1281629+

>NO03G04460.1 ID=NO03G04460.1|Name=NO03G04460.1|organism=Nannochloropsis oceanica|type=CDS|length=1158bp|location=Sequence derived from alignment at chr3:1280472..1281629+ (Nannochloropsis oceanica)
ATGCAGAACGACACCCGCTTCTTCGATGAGGCTTCCTACCTTTCCCAAAT
TCGAGAGGAGGCTTTGACGCAAGAATCGACAATCTTCCACACTGCACACT
GCCCACAAAATCGCTTCCTTCTCGCTTCTTCCAATCAAGGCCGTCTCGCT
ATTTGGGACTTGTCCTCCTACCTCTTCCCAAAAGGGCCCTCCTCCTCCTT
GTCCTCGCCCTCCTTCTACAGTTCTACTTCCTATCCGATTGCTTCCTCCT
CCTCTTATCCCTTAGTATTGCAAGGATTCCAGCGCCAGCTGCATCTCAAC
CAAGCGCGCCTCTACTCTGCAGAATTACGTCGGAAAGGCTACCCCTGTCT
GAGCCTGCAAGTCTCACATCATGCCATCAATCATATCCTGTTTCTTGGGC
AAGACACTGCTCAGCCTTTGTTGGTCCTTGCGGGGGACGATGGCATTTAC
TCTTGGCCATGGAAAACAATTCTGAATCTCCTGCCCCGCACGTGTGATGA
GGAGGACGGGGTCGAGGGGACAGACAATGAGCCATGCTCTTCGACAACCA
TAAACATCGGTCCTCCTTCCTCCATTCTCAAAGCCCTCCCCTCGCAAAAA
GCCTTCCCATTCCTCACGGAATCCAACCAAATCACTTCCTCCCTTCCGCC
CTCTTCCTCCTCTTCCTCAATCTTTAGTGCATGCGGTGACGCCCTTGTTC
GCAATTGGGATATCGAAACACAACAATGCACTTCTTTGCTGATAGGACAT
ACAGGTTATGTTCACGCCGTCAAGAGCTTAGGCATTGAAACGACAGCACC
AGGGGTTGTAGTCTCGGGGGGGGAAGATGGGATGGTGGGGGTGTGGGATG
TGAGGACTGGTGGTGGAGGCAAGAAGGGTAAAGGAGGGAAAGGAGGGGGT
TCATTGATCAGGATGATGGATGGCTGGGCATCGGCGGGGGTGATCAGCAG
TAGTAACAGAAGTAGTAGCAGCAGCGACAAGGAAGGACGGAGCCAGGCTC
CGTCTTGGGTGGCCTCCTTGGATGTGGATCGAGGAGGGAATTTTTTGGTT
GCAGGAGGAGGGGTGGAAGGAGGAGATGGAGGAGGAAGAGGGGGGGCAAC
GGGGGGGTACCGTTTGGGTACTTATCTGTTTTTCATTTGCCGAGTTTTTC
GTTGGTGA
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Synonyms
Publications