NO03G04440.3, NO03G04440.3 (mRNA) Nannochloropsis oceanica

Overview
NameNO03G04440.3
Unique NameNO03G04440.3
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1756
Alignment locationchr3:1276858..1278683 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:1276858..1278683 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO03G04440.3 vs.
Match: EWM29838.1 (sorting and assembly machinery component 50 putative [Nannochloropsis gaditana])

HSP 1 Score: 639.4 bits (1648), Expect = 7.000e-180
Identity = 312/381 (81.89%), Postives = 345/381 (90.55%), Query Frame = 0
Query:    1 MQEAASQNPGETDLLIKVAEKGIFTAYTGTSFTRDDINFEASGSLRNPTGYAESVEGTYSRSRLGNRSVRVNLSKPRVRGANVRLDCELHEDTLNYERTSSLREKVQALAFHLTTHNRRHRLTYEMALRDILPRRHLSTPFAYDASLSIMREATPSLKSAFKYKFIDDRRNDGVLPTGGTFFSGLLELAGLGVGDVAYVKAEVAGATHKPLGVGGICAHLSGVVGVVRPTSWRMREGVGEEGVPRTRFSDRYVLGGLQTMRGFGYSGLGPRAARKEGGCLKGDSLGGDLKYVATAALTMPVPLPLLDKFGLRWQVFADAGNLLPWSAPLASMLSDMRLSCGTGLAMSLGAARVELNYSLPFKRKGSDLEQRWQFGLAAHIG 382
            MQEAAS+ PGETDL IKV EKG+F+AYTGTSFTRDDINFEASGSLRNPTG+AE++EGTYSRSR GNRS++VNL KPRVRG N R DC++HEDTLN+ERTSSL EKVQA+AFHLTTHNRRHRL+YE+ALRDILPRRHLSTPFAYDASLSIMREATPSLKS F+YKF DDR++D VLP+ GTFFSGLLELAG+GVGDVAYVKAEVAGA HKPLG  G+ AHLSG VGVVRPT WR REG G E  PRTRFSDRY+LGGLQT+RGFGYSG+GPRA ++EGG LKGDSLGGD KYVAT ALT P+PLPLLDKFGLRW VFADAGNLLPWSAPL SMLSDMR++CGTGLA+SLG ARVE+NYS+P K++  D EQRWQFGLAAHIG
Sbjct:   66 MQEAASKAPGETDLHIKVIEKGVFSAYTGTSFTRDDINFEASGSLRNPTGHAETLEGTYSRSRQGNRSLKVNLGKPRVRGLNTRFDCQIHEDTLNHERTSSLSEKVQAVAFHLTTHNRRHRLSYELALRDILPRRHLSTPFAYDASLSIMREATPSLKSVFRYKFTDDRQDDSVLPSSGTFFSGLLELAGVGVGDVAYVKAEVAGAAHKPLGATGLSAHLSGSVGVVRPTGWRAREG-GVEEAPRTRFSDRYMLGGLQTLRGFGYSGVGPRAPQREGGALKGDSLGGDFKYVATVALTAPLPLPLLDKFGLRWHVFADAGNLLPWSAPLTSMLSDMRVACGTGLAISLGMARVEMNYSVPVKKEMKDFEQRWQFGLAAHIG 445          
The following BLAST results are available for this feature:
BLAST of NO03G04440.3 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29838.17.000e-18081.89sorting and assembly machinery component 50 putati... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO03G04440NO03G04440Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO03G04440.3NO03G04440.3-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO03G04440.3.cds1NO03G04440.3.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO03G04440.3 ID=NO03G04440.3|Name=NO03G04440.3|organism=Nannochloropsis oceanica|type=mRNA|length=1756bp
AGGAAGCTTGGCAAAGACTTGTTGAAGCTGTTGCTATTGGGCCTGGGGAA
GGATGGTGCGCGCAGACACGCCCTTGCGCATTAACCGCGTCGTTGTTGAA
GTTCACTTCCGCACCACACCACAACTACAGGTAACAAGCGCACGGACCCA
TCGGTGATTGAGGATGAGTTGCAGGAGGCCTACCGGGCCAGCACGGTAGA
AGGCGTCCATCGAGGGCTGCAGAGGTACGTGTTCAGATTATTTTTAAGGG
TGGTTGGACGGACAGAGACGTCGCTTCGGCTTGAGGCGCCTTCGTGCTCA
CTTCATCTTGCATGTAAGTCCAGAGCGAGACACTCATCGCCTGGGCTTGA
GTGTAAGCAAGAACGGATGGCAAGCAGCCACTCTACGAGGTCATCATCTC
TACCCTCCGTCATCCCCCAAACTTTCAAACCTCCTCACACCGCCCAACAG
GGCAACCCAAAGCCTGCAAAGTCTTGGGATCTTCCACGGCATCGACATTC
AAATGCAAGAAGCCGCTAGCCAAAACCCGGGGGAAACCGACCTCCTTATC
AAAGTAGCCGAAAAAGGCATCTTCACTGCCTACACAGGCACAAGCTTCAC
CCGCGACGACATCAATTTCGAAGCCTCCGGCTCCCTCCGCAACCCCACCG
GGTACGCCGAAAGCGTCGAAGGCACCTATTCCCGTTCTCGCCTTGGCAAT
CGTTCTGTTCGTGTAAACCTTAGCAAGCCCCGCGTCCGTGGCGCCAACGT
CCGTCTCGACTGCGAACTTCACGAAGATACGCTCAACTACGAACGCACTT
CCTCGCTGCGCGAGAAAGTTCAAGCCCTGGCATTTCATCTCACTACACAC
AATCGTCGCCATCGCCTCACGTACGAAATGGCCTTGAGAGACATCCTCCC
GAGGAGGCACCTTTCTACCCCCTTTGCCTACGACGCTTCTCTTTCCATAA
TGCGAGAAGCCACCCCCTCCCTCAAATCTGCGTTCAAATACAAATTTATC
GATGACCGGCGGAATGATGGTGTTTTACCCACAGGCGGGACCTTTTTTTC
TGGGTTGTTGGAGCTAGCGGGACTGGGGGTGGGAGATGTGGCGTATGTCA
AAGCCGAAGTGGCGGGGGCCACTCATAAGCCTCTCGGAGTCGGAGGGATC
TGTGCGCATTTATCAGGCGTAGTGGGTGTGGTGCGGCCGACGAGTTGGAG
GATGAGGGAGGGAGTGGGGGAGGAAGGGGTGCCAAGGACGAGGTTTAGTG
ACCGGTATGTGTTGGGGGGACTACAGACAATGAGAGGTTTTGGGTACTCT
GGGCTGGGGCCACGGGCGGCGAGGAAGGAGGGCGGATGTTTGAAGGGAGA
CTCTCTTGGCGGTGATTTGAAGTATGTGGCAACGGCAGCATTGACGATGC
CGGTACCTCTGCCGCTTCTCGATAAGTTTGGGTTGAGGTGGCAAGTGTTC
GCGGATGCCGGTAATTTGTTGCCCTGGTCCGCGCCCTTGGCCAGCATGCT
GAGTGATATGCGATTGTCGTGTGGGACGGGCTTGGCGATGAGCTTGGGTG
CTGCAAGGGTGGAATTGAACTATTCGTTACCGTTCAAGAGGAAGGGAAGT
GACCTCGAGCAACGGTGGCAGTTCGGCTTGGCGGCGCATATCGGGTAGAT
AGCAGAGGAGAGATGGACGAGAGATAAATAGAAAAATTGAGGTAGAAAAG
CGCACGCGCACTCATCAGCGATGCCATAAAGTAAAAATATGGACGGACAA
AGCAGG
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protein sequence of NO03G04440.3

>NO03G04440.3-protein ID=NO03G04440.3-protein|Name=NO03G04440.3|organism=Nannochloropsis oceanica|type=polypeptide|length=382bp
MQEAASQNPGETDLLIKVAEKGIFTAYTGTSFTRDDINFEASGSLRNPTG
YAESVEGTYSRSRLGNRSVRVNLSKPRVRGANVRLDCELHEDTLNYERTS
SLREKVQALAFHLTTHNRRHRLTYEMALRDILPRRHLSTPFAYDASLSIM
REATPSLKSAFKYKFIDDRRNDGVLPTGGTFFSGLLELAGLGVGDVAYVK
AEVAGATHKPLGVGGICAHLSGVVGVVRPTSWRMREGVGEEGVPRTRFSD
RYVLGGLQTMRGFGYSGLGPRAARKEGGCLKGDSLGGDLKYVATAALTMP
VPLPLLDKFGLRWQVFADAGNLLPWSAPLASMLSDMRLSCGTGLAMSLGA
ARVELNYSLPFKRKGSDLEQRWQFGLAAHIG*
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mRNA from alignment at chr3:1276858..1278683+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO03G04440.3 ID=NO03G04440.3|Name=NO03G04440.3|organism=Nannochloropsis oceanica|type=mRNA|length=1826bp|location=Sequence derived from alignment at chr3:1276858..1278683+ (Nannochloropsis oceanica)
AGGAAGCTTGGCAAAGACTTGTTGAAGCTGTTGCTATTGGGCCTGGGGAA GGATGGTGCGCGCAGACACGCCCTTGCGCATTAACCGCGTCGTTGTTGAA GGTCAGTTGGATGGGAGGGCTTGGAGGGGGAGGCTATAACCGCTGTAGAC ACACTTCACACATTGGCGCAGTTCACTTCCGCACCACACCACAACTACAG GTAACAAGCGCACGGACCCATCGGTGATTGAGGATGAGTTGCAGGAGGCC TACCGGGCCAGCACGGTAGAAGGCGTCCATCGAGGGCTGCAGAGGTACGT GTTCAGATTATTTTTAAGGGTGGTTGGACGGACAGAGACGTCGCTTCGGC TTGAGGCGCCTTCGTGCTCACTTCATCTTGCATGTAAGTCCAGAGCGAGA CACTCATCGCCTGGGCTTGAGTGTAAGCAAGAACGGATGGCAAGCAGCCA CTCTACGAGGTCATCATCTCTACCCTCCGTCATCCCCCAAACTTTCAAAC CTCCTCACACCGCCCAACAGGGCAACCCAAAGCCTGCAAAGTCTTGGGAT CTTCCACGGCATCGACATTCAAATGCAAGAAGCCGCTAGCCAAAACCCGG GGGAAACCGACCTCCTTATCAAAGTAGCCGAAAAAGGCATCTTCACTGCC TACACAGGCACAAGCTTCACCCGCGACGACATCAATTTCGAAGCCTCCGG CTCCCTCCGCAACCCCACCGGGTACGCCGAAAGCGTCGAAGGCACCTATT CCCGTTCTCGCCTTGGCAATCGTTCTGTTCGTGTAAACCTTAGCAAGCCC CGCGTCCGTGGCGCCAACGTCCGTCTCGACTGCGAACTTCACGAAGATAC GCTCAACTACGAACGCACTTCCTCGCTGCGCGAGAAAGTTCAAGCCCTGG CATTTCATCTCACTACACACAATCGTCGCCATCGCCTCACGTACGAAATG GCCTTGAGAGACATCCTCCCGAGGAGGCACCTTTCTACCCCCTTTGCCTA CGACGCTTCTCTTTCCATAATGCGAGAAGCCACCCCCTCCCTCAAATCTG CGTTCAAATACAAATTTATCGATGACCGGCGGAATGATGGTGTTTTACCC ACAGGCGGGACCTTTTTTTCTGGGTTGTTGGAGCTAGCGGGACTGGGGGT GGGAGATGTGGCGTATGTCAAAGCCGAAGTGGCGGGGGCCACTCATAAGC CTCTCGGAGTCGGAGGGATCTGTGCGCATTTATCAGGCGTAGTGGGTGTG GTGCGGCCGACGAGTTGGAGGATGAGGGAGGGAGTGGGGGAGGAAGGGGT GCCAAGGACGAGGTTTAGTGACCGGTATGTGTTGGGGGGACTACAGACAA TGAGAGGTTTTGGGTACTCTGGGCTGGGGCCACGGGCGGCGAGGAAGGAG GGCGGATGTTTGAAGGGAGACTCTCTTGGCGGTGATTTGAAGTATGTGGC AACGGCAGCATTGACGATGCCGGTACCTCTGCCGCTTCTCGATAAGTTTG GGTTGAGGTGGCAAGTGTTCGCGGATGCCGGTAATTTGTTGCCCTGGTCC GCGCCCTTGGCCAGCATGCTGAGTGATATGCGATTGTCGTGTGGGACGGG CTTGGCGATGAGCTTGGGTGCTGCAAGGGTGGAATTGAACTATTCGTTAC CGTTCAAGAGGAAGGGAAGTGACCTCGAGCAACGGTGGCAGTTCGGCTTG GCGGCGCATATCGGGTAGATAGCAGAGGAGAGATGGACGAGAGATAAATA GAAAAATTGAGGTAGAAAAGCGCACGCGCACTCATCAGCGATGCCATAAA GTAAAAATATGGACGGACAAAGCAGG
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Coding sequence (CDS) from alignment at chr3:1276858..1278683+

>NO03G04440.3 ID=NO03G04440.3|Name=NO03G04440.3|organism=Nannochloropsis oceanica|type=CDS|length=1146bp|location=Sequence derived from alignment at chr3:1276858..1278683+ (Nannochloropsis oceanica)
ATGCAAGAAGCCGCTAGCCAAAACCCGGGGGAAACCGACCTCCTTATCAA
AGTAGCCGAAAAAGGCATCTTCACTGCCTACACAGGCACAAGCTTCACCC
GCGACGACATCAATTTCGAAGCCTCCGGCTCCCTCCGCAACCCCACCGGG
TACGCCGAAAGCGTCGAAGGCACCTATTCCCGTTCTCGCCTTGGCAATCG
TTCTGTTCGTGTAAACCTTAGCAAGCCCCGCGTCCGTGGCGCCAACGTCC
GTCTCGACTGCGAACTTCACGAAGATACGCTCAACTACGAACGCACTTCC
TCGCTGCGCGAGAAAGTTCAAGCCCTGGCATTTCATCTCACTACACACAA
TCGTCGCCATCGCCTCACGTACGAAATGGCCTTGAGAGACATCCTCCCGA
GGAGGCACCTTTCTACCCCCTTTGCCTACGACGCTTCTCTTTCCATAATG
CGAGAAGCCACCCCCTCCCTCAAATCTGCGTTCAAATACAAATTTATCGA
TGACCGGCGGAATGATGGTGTTTTACCCACAGGCGGGACCTTTTTTTCTG
GGTTGTTGGAGCTAGCGGGACTGGGGGTGGGAGATGTGGCGTATGTCAAA
GCCGAAGTGGCGGGGGCCACTCATAAGCCTCTCGGAGTCGGAGGGATCTG
TGCGCATTTATCAGGCGTAGTGGGTGTGGTGCGGCCGACGAGTTGGAGGA
TGAGGGAGGGAGTGGGGGAGGAAGGGGTGCCAAGGACGAGGTTTAGTGAC
CGGTATGTGTTGGGGGGACTACAGACAATGAGAGGTTTTGGGTACTCTGG
GCTGGGGCCACGGGCGGCGAGGAAGGAGGGCGGATGTTTGAAGGGAGACT
CTCTTGGCGGTGATTTGAAGTATGTGGCAACGGCAGCATTGACGATGCCG
GTACCTCTGCCGCTTCTCGATAAGTTTGGGTTGAGGTGGCAAGTGTTCGC
GGATGCCGGTAATTTGTTGCCCTGGTCCGCGCCCTTGGCCAGCATGCTGA
GTGATATGCGATTGTCGTGTGGGACGGGCTTGGCGATGAGCTTGGGTGCT
GCAAGGGTGGAATTGAACTATTCGTTACCGTTCAAGAGGAAGGGAAGTGA
CCTCGAGCAACGGTGGCAGTTCGGCTTGGCGGCGCATATCGGGTAG
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Synonyms
Publications