NO03G04430.1, NO03G04430.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO03G04430.1
Unique NameNO03G04430.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1299
Alignment locationchr3:1275242..1276540 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:1275242..1276540 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO03G04430.1 vs.
Match: EWM29806.1 (acyl- dehydrogenase [Nannochloropsis gaditana])

HSP 1 Score: 721.5 bits (1861), Expect = 1.600e-204
Identity = 350/421 (83.14%), Postives = 383/421 (90.97%), Query Frame = 0 
Query:    1 MYPQLSPHAQAIYKKLTAFVDEECMPAEKVFEEQHAALSSRWMVPAVVETLKAKAKRLGLWNLFMMEEHVHHSGLKMTEYAVMSEVMGRSFLAPEACNCNAPDTGNMEVLAKYGNAAQQARWLTPLMAGTIRSTFLMTEPAVASSDATNICTNFCREGDEYVVNGRKWWSSGAMDPRCQVALVMGKVEGAATNAARRHQQHSILIVPMDTPGLKVLRPLTVFGFDDAPHGHAEVELVNVRVPVSNLVLGEGDGFKIAQGRLGPGRIHHCMRAIGLSERVLALAIKRAMTRKAFGQELARQGTVQRDLAQCRMELDQARLLVLHAAWRMDTNGGAKGAQQEIAMIKVVAPNMGQRVVDTAIQIHGGMGVCQDTILARAFAYMRSLRIADGPDVVHSRTVARHELKRMIDGKTQLSADAWYRS 422
            MYPQLSPHA+ +Y KLTAFVDEEC+PAE V+E QHA LSSRWM+P ++ETLK KA++LGLWNLFMME  V+HSGL M EYAV+SEVMGRSFLAPEACNCNAPDTGNMEVLAKYGNA QQA+WL PLM G+IRSTFLMTEP VASSDATNI T+F REGDEYVVNGRKWWSSGAMDPRCQVALV+GKV+   T AA RH+QHSILIVPM TPG+KVLR L+VFGFDDAPHGHAEVEL  VRVPVSNL+LGEGDGFKIAQGRLGPGRIHHCMRAIGLSERVLALA  RA+TR+AFG+E+ARQG VQRDLAQCR+ +DQARLLVLHAAWRMDTN GAKGAQQEIAMIKVVAP+ GQ+VVDTAIQIHGGMGVCQDTILARAFAYMRSLRIADGPD VH RTVAR+ELK+ ++G T  +ADAWYRS
Sbjct:    1 MYPQLSPHAKTLYAKLTAFVDEECLPAEVVYERQHAELSSRWMIPEIIETLKGKARKLGLWNLFMMERDVYHSGLNMVEYAVLSEVMGRSFLAPEACNCNAPDTGNMEVLAKYGNARQQAQWLNPLMEGSIRSTFLMTEPGVASSDATNIATSFRREGDEYVVNGRKWWSSGAMDPRCQVALVLGKVDSPVTAAAPRHRQHSILIVPMATPGVKVLRALSVFGFDDAPHGHAEVELAEVRVPVSNLILGEGDGFKIAQGRLGPGRIHHCMRAIGLSERVLALATMRALTRRAFGKEIARQGAVQRDLAQCRISVDQARLLVLHAAWRMDTNKGAKGAQQEIAMIKVVAPSAGQQVVDTAIQIHGGMGVCQDTILARAFAYMRSLRIADGPDDVHMRTVARYELKKAMEGATGPAADAWYRS 421
The following BLAST results are available for this feature:
BLAST of NO03G04430.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29806.11.600e-20483.14acyl- dehydrogenase [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO03G04430NO03G04430Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO03G04430.1NO03G04430.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO03G04430.1.cds1NO03G04430.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO03G04430.1 ID=NO03G04430.1|Name=NO03G04430.1|organism=Nannochloropsis oceanica|type=mRNA|length=1299bp
ATGTACCCCCAGCTTAGCCCACATGCCCAAGCTATCTACAAGAAGCTGAC
GGCCTTTGTGGACGAGGAATGCATGCCGGCCGAGAAAGTGTTTGAGGAGC
AGCATGCAGCATTGTCTTCCCGGTGGATGGTCCCCGCGGTCGTCGAGACC
CTCAAGGCCAAAGCCAAGAGGTTAGGCCTATGGAACCTCTTTATGATGGA
AGAGCACGTGCATCACTCCGGGCTGAAAATGACGGAGTACGCTGTTATGA
GTGAGGTCATGGGTCGGTCCTTTCTGGCGCCCGAGGCATGTAATTGCAAT
GCGCCAGACACGGGTAACATGGAAGTGTTGGCAAAGTATGGCAACGCCGC
GCAACAAGCACGGTGGCTCACTCCCTTAATGGCAGGCACCATCCGCTCTA
CCTTTCTCATGACTGAACCCGCCGTCGCCTCGTCGGATGCGACCAATATT
TGCACGAACTTCTGTAGGGAAGGCGATGAGTATGTGGTGAATGGCCGCAA
GTGGTGGAGCTCCGGCGCCATGGACCCCCGTTGCCAAGTCGCGCTTGTGA
TGGGCAAGGTAGAAGGCGCCGCCACCAACGCTGCCCGTCGGCATCAGCAG
CATTCCATCTTGATTGTACCCATGGACACACCCGGGCTCAAGGTCTTGCG
CCCTCTGACCGTTTTTGGGTTCGACGATGCCCCCCACGGTCACGCCGAGG
TGGAACTTGTGAATGTGCGTGTGCCCGTCAGCAACCTGGTCCTGGGAGAA
GGGGACGGCTTCAAAATTGCACAAGGCCGCTTAGGCCCGGGGCGGATCCA
CCATTGTATGCGAGCAATTGGGCTGTCGGAGCGCGTGTTGGCGTTGGCGA
TTAAGCGAGCCATGACGCGCAAGGCTTTTGGACAGGAGCTCGCGCGACAA
GGCACCGTGCAACGGGACTTGGCGCAGTGCCGGATGGAGTTAGACCAGGC
ACGATTGTTGGTGTTGCACGCTGCCTGGCGGATGGATACGAATGGCGGGG
CCAAAGGTGCACAACAGGAGATTGCGATGATCAAGGTTGTAGCGCCGAAT
ATGGGCCAACGGGTGGTGGACACTGCCATTCAGATTCATGGTGGTATGGG
CGTGTGTCAAGACACTATTCTGGCACGGGCATTTGCGTACATGCGCTCAC
TGCGTATTGCAGACGGGCCCGATGTGGTGCATTCACGAACGGTGGCGCGC
CATGAGTTGAAGCGGATGATAGATGGCAAGACACAGCTATCTGCGGACGC
GTGGTATAGGAGCACCCATGGCGTCACCAGTGTGAACAGCAGGCTTTGA
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protein sequence of NO03G04430.1

>NO03G04430.1-protein ID=NO03G04430.1-protein|Name=NO03G04430.1|organism=Nannochloropsis oceanica|type=polypeptide|length=433bp
MYPQLSPHAQAIYKKLTAFVDEECMPAEKVFEEQHAALSSRWMVPAVVET
LKAKAKRLGLWNLFMMEEHVHHSGLKMTEYAVMSEVMGRSFLAPEACNCN
APDTGNMEVLAKYGNAAQQARWLTPLMAGTIRSTFLMTEPAVASSDATNI
CTNFCREGDEYVVNGRKWWSSGAMDPRCQVALVMGKVEGAATNAARRHQQ
HSILIVPMDTPGLKVLRPLTVFGFDDAPHGHAEVELVNVRVPVSNLVLGE
GDGFKIAQGRLGPGRIHHCMRAIGLSERVLALAIKRAMTRKAFGQELARQ
GTVQRDLAQCRMELDQARLLVLHAAWRMDTNGGAKGAQQEIAMIKVVAPN
MGQRVVDTAIQIHGGMGVCQDTILARAFAYMRSLRIADGPDVVHSRTVAR
HELKRMIDGKTQLSADAWYRSTHGVTSVNSRL*
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mRNA from alignment at chr3:1275242..1276540-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO03G04430.1 ID=NO03G04430.1|Name=NO03G04430.1|organism=Nannochloropsis oceanica|type=mRNA|length=1299bp|location=Sequence derived from alignment at chr3:1275242..1276540- (Nannochloropsis oceanica)
ATGTACCCCCAGCTTAGCCCACATGCCCAAGCTATCTACAAGAAGCTGAC
GGCCTTTGTGGACGAGGAATGCATGCCGGCCGAGAAAGTGTTTGAGGAGC
AGCATGCAGCATTGTCTTCCCGGTGGATGGTCCCCGCGGTCGTCGAGACC
CTCAAGGCCAAAGCCAAGAGGTTAGGCCTATGGAACCTCTTTATGATGGA
AGAGCACGTGCATCACTCCGGGCTGAAAATGACGGAGTACGCTGTTATGA
GTGAGGTCATGGGTCGGTCCTTTCTGGCGCCCGAGGCATGTAATTGCAAT
GCGCCAGACACGGGTAACATGGAAGTGTTGGCAAAGTATGGCAACGCCGC
GCAACAAGCACGGTGGCTCACTCCCTTAATGGCAGGCACCATCCGCTCTA
CCTTTCTCATGACTGAACCCGCCGTCGCCTCGTCGGATGCGACCAATATT
TGCACGAACTTCTGTAGGGAAGGCGATGAGTATGTGGTGAATGGCCGCAA
GTGGTGGAGCTCCGGCGCCATGGACCCCCGTTGCCAAGTCGCGCTTGTGA
TGGGCAAGGTAGAAGGCGCCGCCACCAACGCTGCCCGTCGGCATCAGCAG
CATTCCATCTTGATTGTACCCATGGACACACCCGGGCTCAAGGTCTTGCG
CCCTCTGACCGTTTTTGGGTTCGACGATGCCCCCCACGGTCACGCCGAGG
TGGAACTTGTGAATGTGCGTGTGCCCGTCAGCAACCTGGTCCTGGGAGAA
GGGGACGGCTTCAAAATTGCACAAGGCCGCTTAGGCCCGGGGCGGATCCA
CCATTGTATGCGAGCAATTGGGCTGTCGGAGCGCGTGTTGGCGTTGGCGA
TTAAGCGAGCCATGACGCGCAAGGCTTTTGGACAGGAGCTCGCGCGACAA
GGCACCGTGCAACGGGACTTGGCGCAGTGCCGGATGGAGTTAGACCAGGC
ACGATTGTTGGTGTTGCACGCTGCCTGGCGGATGGATACGAATGGCGGGG
CCAAAGGTGCACAACAGGAGATTGCGATGATCAAGGTTGTAGCGCCGAAT
ATGGGCCAACGGGTGGTGGACACTGCCATTCAGATTCATGGTGGTATGGG
CGTGTGTCAAGACACTATTCTGGCACGGGCATTTGCGTACATGCGCTCAC
TGCGTATTGCAGACGGGCCCGATGTGGTGCATTCACGAACGGTGGCGCGC
CATGAGTTGAAGCGGATGATAGATGGCAAGACACAGCTATCTGCGGACGC
GTGGTATAGGAGCACCCATGGCGTCACCAGTGTGAACAGCAGGCTTTGA
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Coding sequence (CDS) from alignment at chr3:1275242..1276540-

>NO03G04430.1 ID=NO03G04430.1|Name=NO03G04430.1|organism=Nannochloropsis oceanica|type=CDS|length=1299bp|location=Sequence derived from alignment at chr3:1275242..1276540- (Nannochloropsis oceanica)
ATGTACCCCCAGCTTAGCCCACATGCCCAAGCTATCTACAAGAAGCTGAC
GGCCTTTGTGGACGAGGAATGCATGCCGGCCGAGAAAGTGTTTGAGGAGC
AGCATGCAGCATTGTCTTCCCGGTGGATGGTCCCCGCGGTCGTCGAGACC
CTCAAGGCCAAAGCCAAGAGGTTAGGCCTATGGAACCTCTTTATGATGGA
AGAGCACGTGCATCACTCCGGGCTGAAAATGACGGAGTACGCTGTTATGA
GTGAGGTCATGGGTCGGTCCTTTCTGGCGCCCGAGGCATGTAATTGCAAT
GCGCCAGACACGGGTAACATGGAAGTGTTGGCAAAGTATGGCAACGCCGC
GCAACAAGCACGGTGGCTCACTCCCTTAATGGCAGGCACCATCCGCTCTA
CCTTTCTCATGACTGAACCCGCCGTCGCCTCGTCGGATGCGACCAATATT
TGCACGAACTTCTGTAGGGAAGGCGATGAGTATGTGGTGAATGGCCGCAA
GTGGTGGAGCTCCGGCGCCATGGACCCCCGTTGCCAAGTCGCGCTTGTGA
TGGGCAAGGTAGAAGGCGCCGCCACCAACGCTGCCCGTCGGCATCAGCAG
CATTCCATCTTGATTGTACCCATGGACACACCCGGGCTCAAGGTCTTGCG
CCCTCTGACCGTTTTTGGGTTCGACGATGCCCCCCACGGTCACGCCGAGG
TGGAACTTGTGAATGTGCGTGTGCCCGTCAGCAACCTGGTCCTGGGAGAA
GGGGACGGCTTCAAAATTGCACAAGGCCGCTTAGGCCCGGGGCGGATCCA
CCATTGTATGCGAGCAATTGGGCTGTCGGAGCGCGTGTTGGCGTTGGCGA
TTAAGCGAGCCATGACGCGCAAGGCTTTTGGACAGGAGCTCGCGCGACAA
GGCACCGTGCAACGGGACTTGGCGCAGTGCCGGATGGAGTTAGACCAGGC
ACGATTGTTGGTGTTGCACGCTGCCTGGCGGATGGATACGAATGGCGGGG
CCAAAGGTGCACAACAGGAGATTGCGATGATCAAGGTTGTAGCGCCGAAT
ATGGGCCAACGGGTGGTGGACACTGCCATTCAGATTCATGGTGGTATGGG
CGTGTGTCAAGACACTATTCTGGCACGGGCATTTGCGTACATGCGCTCAC
TGCGTATTGCAGACGGGCCCGATGTGGTGCATTCACGAACGGTGGCGCGC
CATGAGTTGAAGCGGATGATAGATGGCAAGACACAGCTATCTGCGGACGC
GTGGTATAGGAGCACCCATGGCGTCACCAGTGTGAACAGCAGGCTTTGA
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Synonyms
Publications