NO03G04400.1, NO03G04400.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO03G04400.1
Unique NameNO03G04400.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1017
Alignment locationchr3:1266444..1268151 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:1266444..1268151 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO03G04400.1 vs.
Match: EWM29783.1 (stress-inducible protein sti1 [Nannochloropsis gaditana])

HSP 1 Score: 520.8 bits (1340), Expect = 3.200e-144
Identity = 255/309 (82.52%), Postives = 291/309 (94.17%), Query Frame = 0 
Query:   30 NLGNQAFKAGDYKKAIEHYGEALKIDPSAHTYWSNRSASYAGLGDWENAANDASECLKANKIFVKGYFRLALAQKNLQRYEQALETITRGLQVDFGNNDLKSMRKEVEDGVRLQKVASYIDTAKQQFMNKEYSACLSTIDSGLRIDAGNSSLVDLQKKVQPMWEKEERTRKAGLSPVEKMKEEGDAYYKSANFEAAIQQYTKTLNKIDDKSSEIALKVFSNRAACYKQLSNFDGVISDCTSVMEVKPDDVKSLLRRAQAFEAVERYKMALQDVRTLLALPMDVVGPSNTSIANGLQHRLNRVIQKLREG 339
            +LGNQAFKAG+Y KAIEHY EALK+D +AHTYWSNRSASYAGLGDWENAANDA+EC+KANK FVKGYFRLALAQKNLQRY+QAL+TI +GL +DFGN+DLKSM+KE+ED VRLQKVASY++TAKQQF +++Y ACLSTI+SGLRIDAGN++LV L+ KVQP+WE++ER RKAGLSPVEKMKEEGDA YK ANFEAAI QY+KTL+K+DD++S+ A+KV SNRAAC+KQLSNFDGVISDCTSV+EV+PDDVKSLLRRAQAFEAVERYKMALQDVRTLLALP DVVGPSNTSIANGLQHRLNRVIQKLR+G
Sbjct:   18 SLGNQAFKAGNYAKAIEHYSEALKLDATAHTYWSNRSASYAGLGDWENAANDAAECVKANKKFVKGYFRLALAQKNLQRYDQALDTIMKGLGIDFGNSDLKSMKKEIEDAVRLQKVASYVETAKQQFASRDYGACLSTIESGLRIDAGNAALVALKGKVQPLWEQKERARKAGLSPVEKMKEEGDALYKDANFEAAIAQYSKTLDKMDDQTSDFAMKVLSNRAACHKQLSNFDGVISDCTSVLEVRPDDVKSLLRRAQAFEAVERYKMALQDVRTLLALPADVVGPSNTSIANGLQHRLNRVIQKLRDG 326
The following BLAST results are available for this feature:
BLAST of NO03G04400.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29783.13.200e-14482.52stress-inducible protein sti1 [Nannochloropsis gad... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO03G04400NO03G04400Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO03G04400.1NO03G04400.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO03G04400.1.cds1NO03G04400.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO03G04400.1.cds2NO03G04400.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO03G04400.1.cds3NO03G04400.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO03G04400.1.cds4NO03G04400.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO03G04400.1 ID=NO03G04400.1|Name=NO03G04400.1|organism=Nannochloropsis oceanica|type=mRNA|length=1017bp
ATGCCCCCCGCACAGGACTTTCTCCATCCTTTCGCCACTACCCACTACAC
GGACACAATGCCCATCCCTGCCGCCGAGGAGAAAAAAAACTTGGGCAACC
AGGCTTTCAAGGCCGGGGACTACAAGAAGGCTATCGAGCACTACGGCGAA
GCCCTTAAAATTGATCCATCCGCACACACCTACTGGTCGAATCGCAGTGC
TTCATATGCGGGGTTGGGTGACTGGGAGAATGCAGCGAATGACGCGAGTG
AATGCTTGAAGGCCAATAAAATTTTTGTGAAGGGCTATTTCCGCCTTGCT
CTGGCCCAGAAGAACCTGCAGCGGTATGAGCAGGCGTTGGAGACGATCAC
ACGGGGGTTGCAAGTGGATTTTGGGAATAATGATCTGAAGTCGATGAGGA
AGGAAGTGGAGGATGGGGTGAGACTGCAAAAGGTGGCCAGTTACATCGAC
ACAGCCAAGCAGCAGTTTATGAATAAGGAGTACAGTGCATGCTTGAGCAC
CATTGACAGTGGGCTGAGGATCGACGCGGGCAACTCGTCCCTGGTGGACT
TACAGAAAAAGGTGCAGCCCATGTGGGAGAAAGAGGAGAGGACCCGGAAG
GCGGGTTTGAGCCCAGTGGAGAAGATGAAGGAGGAGGGGGATGCGTACTA
TAAGAGTGCGAATTTTGAGGCGGCCATTCAGCAGTACACGAAAACGTTGA
ACAAGATTGATGATAAGAGCTCGGAAATCGCCCTCAAGGTATTCTCGAAT
CGCGCAGCCTGCTACAAGCAGCTCTCCAACTTTGACGGGGTCATCTCCGA
TTGCACCAGCGTCATGGAAGTCAAGCCCGATGATGTCAAATCCCTCCTGA
GGAGGGCGCAAGCTTTCGAGGCCGTGGAAAGGTACAAGATGGCACTGCAG
GATGTGAGGACGCTGTTGGCCTTGCCTATGGACGTGGTAGGCCCATCGAA
CACGTCGATCGCCAACGGTCTGCAGCATCGCTTGAACCGCGTTATCCAAA
AGTTGCGAGAAGGGTAA
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protein sequence of NO03G04400.1

>NO03G04400.1-protein ID=NO03G04400.1-protein|Name=NO03G04400.1|organism=Nannochloropsis oceanica|type=polypeptide|length=339bp
MPPAQDFLHPFATTHYTDTMPIPAAEEKKNLGNQAFKAGDYKKAIEHYGE
ALKIDPSAHTYWSNRSASYAGLGDWENAANDASECLKANKIFVKGYFRLA
LAQKNLQRYEQALETITRGLQVDFGNNDLKSMRKEVEDGVRLQKVASYID
TAKQQFMNKEYSACLSTIDSGLRIDAGNSSLVDLQKKVQPMWEKEERTRK
AGLSPVEKMKEEGDAYYKSANFEAAIQQYTKTLNKIDDKSSEIALKVFSN
RAACYKQLSNFDGVISDCTSVMEVKPDDVKSLLRRAQAFEAVERYKMALQ
DVRTLLALPMDVVGPSNTSIANGLQHRLNRVIQKLREG*
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mRNA from alignment at chr3:1266444..1268151-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO03G04400.1 ID=NO03G04400.1|Name=NO03G04400.1|organism=Nannochloropsis oceanica|type=mRNA|length=1708bp|location=Sequence derived from alignment at chr3:1266444..1268151- (Nannochloropsis oceanica)
ATGCCCCCCGCACAGGACTTTCTCCATCCTTTCGCCACTACCCACTACAC
GGACACAATGCCCATCCCTGCCGCCGAGGAGAAAAAAAAGTAAGTAGAGT
AGCAAATACAAATATAACTTGGAGAAACGCGTTTGTGCGTGTAAGGAGAG
TCTGCGGATCCCGTGCGTGCCGAGATCGTGGAGACGCAGCAGCGGAGCCG
ATGTGAGCAACCGCAATAAACTAGATAGACTTTGTTATGCAGGCGCCTAT
TTAACTGTTATGCAGACCCCCACTTCTTCATGTATTATGGCTAACTGGCT
CTATCGGTAGTGAACGTACCTGGTGCTTAGCCTTCATGCACAAATTTACA
CGGACCGAGGGCTACCAAACCAGCGCATGCCGTTTGTTTGTTGTCCATGC
CGGGTGCCCATATATTTACACATGAGCTCCTTGAAGTATGTACGAATTGT
CTTTGTGGATACAGCTTACCGCTTTCCCGTTATTATTATCACCCCATCCT
CCCTCGCTCCTCTCCCTGCCTCCACCCCTCCCTCCTTCGCTTACTACACA
GCTTGGGCAACCAGGCTTTCAAGGCCGGGGACTACAAGAAGGCTATCGAG
CACTACGGCGAAGCCCTTAAAATTGATCCATCCGCACACACCTACTGGTC
GAATCGCAGTGCTTCATATGCGGGGTTGGGTGACTGGGAGAATGCAGCGA
ATGACGCGAGTGAATGCTTGAAGGCCAATAAAATTTTTGTGAAGGGCTAT
TTCCGCCTTGCTCTGGCCCAGAAGAACCTGCAGCGGTATGAGCAGGCGTT
GGAGACGATCACACGGGGGTTGCAAGTGGATTTTGGGAATAATGATCTGA
AGTCGATGAGGAAGGAAGTGGAGGATGGGGTGAGACTGCAAAAGGTGGCC
AGTTACATCGACACAGCCAAGCAGCAGTTTATGAATAAGGAGTACAGTGC
ATGCTTGAGCACCATTGACAGTGGGCTGAGGATCGACGCGGGCAACTCGT
CCCTGGTGGACTTACAGAAAAAGGTGCAGCCCATGTGGGAGAAAGAGGAG
AGGACCCGGAAGGCGGGTTTGAGCCCAGTGGAGAAGATGAAGGAGGAGGG
GGATGCGTACTATAAGAGTGCGAATTTTGAGGCGGCCATTCAGCAGTACA
CGAAAACGTTGAACAAGATTGATGATAAGAGTAAGAATAAGGGAGCGAGA
GGAAGGGGGGAGAGGGTGTTGGTGACGCTTTGTCACGAGGGGCAATGGGA
CATATCTTCTGATTTCCTCGTTCCCTTCACAAAACAGGCTCGGAAATCGC
CCTCAAGGTATTCTCGAATCGCGCAGCCTGCTACAAGCAGCTCTCCAACT
TTGACGGGGTCATCTCCGATTGCACCAGCGTCATGGAAGTCAAGCCCGAT
GATGTCAAATCCCTCCTGAGGAGGGCGCAAGCTTTCGAGGCCGTGGAAAG
GTACAAGATGGCACTGCAGGATGTGAGGACGCTGTTGGCCTTGCCTATGG
ACGTGGTAGGCCCATCGAACACGTCGGTAGGTGTTGAGAGAGGAAGGGGG
ATGGAGGGAAAGGGGTGTCTACTCGTCTTGTTCATTATCTCGTCACGTTC
GTGGTGCTCACCATTTTGGCTTCCTCCACTTATTTCCACAATGCACAGAT
CGCCAACGGTCTGCAGCATCGCTTGAACCGCGTTATCCAAAAGTTGCGAG
AAGGGTAA
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Coding sequence (CDS) from alignment at chr3:1266444..1268151-

>NO03G04400.1 ID=NO03G04400.1|Name=NO03G04400.1|organism=Nannochloropsis oceanica|type=CDS|length=1017bp|location=Sequence derived from alignment at chr3:1266444..1268151- (Nannochloropsis oceanica)
ATGCCCCCCGCACAGGACTTTCTCCATCCTTTCGCCACTACCCACTACAC
GGACACAATGCCCATCCCTGCCGCCGAGGAGAAAAAAAACTTGGGCAACC
AGGCTTTCAAGGCCGGGGACTACAAGAAGGCTATCGAGCACTACGGCGAA
GCCCTTAAAATTGATCCATCCGCACACACCTACTGGTCGAATCGCAGTGC
TTCATATGCGGGGTTGGGTGACTGGGAGAATGCAGCGAATGACGCGAGTG
AATGCTTGAAGGCCAATAAAATTTTTGTGAAGGGCTATTTCCGCCTTGCT
CTGGCCCAGAAGAACCTGCAGCGGTATGAGCAGGCGTTGGAGACGATCAC
ACGGGGGTTGCAAGTGGATTTTGGGAATAATGATCTGAAGTCGATGAGGA
AGGAAGTGGAGGATGGGGTGAGACTGCAAAAGGTGGCCAGTTACATCGAC
ACAGCCAAGCAGCAGTTTATGAATAAGGAGTACAGTGCATGCTTGAGCAC
CATTGACAGTGGGCTGAGGATCGACGCGGGCAACTCGTCCCTGGTGGACT
TACAGAAAAAGGTGCAGCCCATGTGGGAGAAAGAGGAGAGGACCCGGAAG
GCGGGTTTGAGCCCAGTGGAGAAGATGAAGGAGGAGGGGGATGCGTACTA
TAAGAGTGCGAATTTTGAGGCGGCCATTCAGCAGTACACGAAAACGTTGA
ACAAGATTGATGATAAGAGCTCGGAAATCGCCCTCAAGGTATTCTCGAAT
CGCGCAGCCTGCTACAAGCAGCTCTCCAACTTTGACGGGGTCATCTCCGA
TTGCACCAGCGTCATGGAAGTCAAGCCCGATGATGTCAAATCCCTCCTGA
GGAGGGCGCAAGCTTTCGAGGCCGTGGAAAGGTACAAGATGGCACTGCAG
GATGTGAGGACGCTGTTGGCCTTGCCTATGGACGTGGTAGGCCCATCGAA
CACGTCGATCGCCAACGGTCTGCAGCATCGCTTGAACCGCGTTATCCAAA
AGTTGCGAGAAGGGTAA
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Synonyms
Publications