NO03G04390.1, NO03G04390.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO03G04390.1
Unique NameNO03G04390.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length765
Alignment locationchr3:1264598..1265552 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:1264598..1265552 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO03G04390.1 vs.
Match: EWM29821.1 (protein-s-isoprenylcysteine o-methyltransferase [Nannochloropsis gaditana])

HSP 1 Score: 392.5 bits (1007), Expect = 1.000e-105
Identity = 183/252 (72.62%), Postives = 212/252 (84.13%), Query Frame = 0
Query:    1 MQQVERLQRGLNFDLPAAAGNPAFNTNKGLGRVGLAGFVLGGLWGVHFTAFFVSLFFLSRSALWLLRWSAYMVSLCLFHFMEFLSTALYKPETVTYDSFIINHSKEYTIAALAAWVEFWVELWLFPGLKTRGVFTFLVGGLLLVAGQACRIVAMHTARGHFSHTIMEKHSEGHQLVTHGIYSYLRHPSYCGWFWWVVGMQVLLCNPVCALAYAWVSWNFFASRIEYEEVTLRRFYPHQYPEYCRRTVVGIPF 253
            M  ++RLQ+ L+F+ PAAA NPAF+TN+G+GR+GLAGF+LGGLWG H   FF +L   + + LWL+RWSAYMVSL  FHFMEFLSTALYKPE+VTYDS++INHSKEYT+AALAAW EFW+ELW FP LK  G FT L+G L LV GQACRIVAMHTARGHFSHTIME   + HQLVTHGIY +LRHPSYCGWFWWVVG Q+LLCNP+CAL YA VSW FFA+RI+YEE TL+ FYP +YP YCR+TVVGIPF
Sbjct:    1 MLSIDRLQKCLDFNFPAAAANPAFHTNRGVGRIGLAGFLLGGLWGAHLVLFFAALLG-NDNKLWLVRWSAYMVSLFCFHFMEFLSTALYKPESVTYDSYMINHSKEYTVAALAAWAEFWLELWFFPDLKISGSFTCLLGLLFLVGGQACRIVAMHTARGHFSHTIMETRQKDHQLVTHGIYRFLRHPSYCGWFWWVVGTQILLCNPLCALIYALVSWRFFAARIKYEEGTLKTFYPQEYPSYCRQTVVGIPF 251          
The following BLAST results are available for this feature:
BLAST of NO03G04390.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29821.11.000e-10572.62protein-s-isoprenylcysteine o-methyltransferase [N... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO03G04390NO03G04390Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO03G04390.1NO03G04390.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO03G04390.1.cds1NO03G04390.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO03G04390.1.cds2NO03G04390.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO03G04390.1 ID=NO03G04390.1|Name=NO03G04390.1|organism=Nannochloropsis oceanica|type=mRNA|length=765bp
ATGCAGCAGGTCGAAAGGCTGCAGCGGGGCCTGAATTTTGACCTGCCGGC
GGCTGCTGGTAACCCTGCCTTCAATACCAACAAGGGCTTAGGCCGCGTTG
GCCTGGCGGGTTTTGTGCTGGGCGGGCTCTGGGGTGTCCATTTCACAGCC
TTTTTCGTGTCCCTTTTCTTCTTATCAAGGAGCGCACTATGGTTGTTACG
TTGGAGTGCATATATGGTCTCGCTGTGTCTCTTTCATTTCATGGAGTTCC
TCAGCACGGCGCTGTATAAGCCAGAGACGGTTACGTATGATTCCTTCATC
ATCAACCACTCAAAAGAATACACCATCGCTGCCTTGGCCGCTTGGGTGGA
ATTCTGGGTCGAGCTCTGGCTCTTCCCTGGACTCAAGACCCGTGGCGTGT
TCACCTTTCTGGTGGGAGGTCTGTTGCTGGTTGCGGGACAAGCATGTCGC
ATCGTCGCCATGCACACAGCCCGGGGCCACTTTTCGCACACCATCATGGA
GAAACATTCGGAGGGACACCAGCTCGTGACGCATGGAATTTATTCCTACC
TACGCCATCCTTCTTATTGTGGGTGGTTCTGGTGGGTTGTTGGGATGCAG
GTGCTGCTTTGTAATCCTGTGTGTGCTTTAGCCTATGCGTGGGTGAGCTG
GAACTTCTTTGCGTCGAGAATAGAGTATGAAGAGGTGACGTTGAGGAGAT
TTTATCCACATCAGTACCCAGAATATTGCCGGCGGACGGTGGTGGGGATT
CCGTTTACTAGATGA
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protein sequence of NO03G04390.1

>NO03G04390.1-protein ID=NO03G04390.1-protein|Name=NO03G04390.1|organism=Nannochloropsis oceanica|type=polypeptide|length=255bp
MQQVERLQRGLNFDLPAAAGNPAFNTNKGLGRVGLAGFVLGGLWGVHFTA
FFVSLFFLSRSALWLLRWSAYMVSLCLFHFMEFLSTALYKPETVTYDSFI
INHSKEYTIAALAAWVEFWVELWLFPGLKTRGVFTFLVGGLLLVAGQACR
IVAMHTARGHFSHTIMEKHSEGHQLVTHGIYSYLRHPSYCGWFWWVVGMQ
VLLCNPVCALAYAWVSWNFFASRIEYEEVTLRRFYPHQYPEYCRRTVVGI
PFTR*
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mRNA from alignment at chr3:1264598..1265552-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO03G04390.1 ID=NO03G04390.1|Name=NO03G04390.1|organism=Nannochloropsis oceanica|type=mRNA|length=955bp|location=Sequence derived from alignment at chr3:1264598..1265552- (Nannochloropsis oceanica)
ATGCAGCAGGTCGAAAGGCTGCAGCGGGGCCTGAATTTTGACCTGCCGGC GGCTGCTGGTAACCCTGCCTTCAATACCAACAAGGGCTTAGGCCGCGTTG GCCTGGCGGGTTTTGTGCTGGGCGGGCTCTGGGGTGTCCATTTCACAGCC TTTTTCGTGTCCCTTTTCTTCTTATCAAGGAGCGCACTATGGTTGTTACG TTGGAGTGCATATATGGTCTCGCTGTGTCTCTTTCATTTCATGGAGTTCC TCAGCACGGCGCTGTATAAGCCAGAGACGGTTACGTATGATTGTAAGTTG TGATCGGGGGGAGCCCATGGTTGTGTCTCTGTGATTGCTGCACTAACCGC CACCTGATATTTCATTTACCCTTCCTTATTTACCCCTCCAACCTCTCGGA CAAACCTTTCTACAACCCCACCCCTCACGAAGCCCCCCCTCCCATCTTAC CACTCCTCTCTCCCACATTCTCACTCCCAAAGCCTTCATCATCAACCACT CAAAAGAATACACCATCGCTGCCTTGGCCGCTTGGGTGGAATTCTGGGTC GAGCTCTGGCTCTTCCCTGGACTCAAGACCCGTGGCGTGTTCACCTTTCT GGTGGGAGGTCTGTTGCTGGTTGCGGGACAAGCATGTCGCATCGTCGCCA TGCACACAGCCCGGGGCCACTTTTCGCACACCATCATGGAGAAACATTCG GAGGGACACCAGCTCGTGACGCATGGAATTTATTCCTACCTACGCCATCC TTCTTATTGTGGGTGGTTCTGGTGGGTTGTTGGGATGCAGGTGCTGCTTT GTAATCCTGTGTGTGCTTTAGCCTATGCGTGGGTGAGCTGGAACTTCTTT GCGTCGAGAATAGAGTATGAAGAGGTGACGTTGAGGAGATTTTATCCACA TCAGTACCCAGAATATTGCCGGCGGACGGTGGTGGGGATTCCGTTTACTA GATGA
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Coding sequence (CDS) from alignment at chr3:1264598..1265552-

>NO03G04390.1 ID=NO03G04390.1|Name=NO03G04390.1|organism=Nannochloropsis oceanica|type=CDS|length=765bp|location=Sequence derived from alignment at chr3:1264598..1265552- (Nannochloropsis oceanica)
ATGCAGCAGGTCGAAAGGCTGCAGCGGGGCCTGAATTTTGACCTGCCGGC
GGCTGCTGGTAACCCTGCCTTCAATACCAACAAGGGCTTAGGCCGCGTTG
GCCTGGCGGGTTTTGTGCTGGGCGGGCTCTGGGGTGTCCATTTCACAGCC
TTTTTCGTGTCCCTTTTCTTCTTATCAAGGAGCGCACTATGGTTGTTACG
TTGGAGTGCATATATGGTCTCGCTGTGTCTCTTTCATTTCATGGAGTTCC
TCAGCACGGCGCTGTATAAGCCAGAGACGGTTACGTATGATTCCTTCATC
ATCAACCACTCAAAAGAATACACCATCGCTGCCTTGGCCGCTTGGGTGGA
ATTCTGGGTCGAGCTCTGGCTCTTCCCTGGACTCAAGACCCGTGGCGTGT
TCACCTTTCTGGTGGGAGGTCTGTTGCTGGTTGCGGGACAAGCATGTCGC
ATCGTCGCCATGCACACAGCCCGGGGCCACTTTTCGCACACCATCATGGA
GAAACATTCGGAGGGACACCAGCTCGTGACGCATGGAATTTATTCCTACC
TACGCCATCCTTCTTATTGTGGGTGGTTCTGGTGGGTTGTTGGGATGCAG
GTGCTGCTTTGTAATCCTGTGTGTGCTTTAGCCTATGCGTGGGTGAGCTG
GAACTTCTTTGCGTCGAGAATAGAGTATGAAGAGGTGACGTTGAGGAGAT
TTTATCCACATCAGTACCCAGAATATTGCCGGCGGACGGTGGTGGGGATT
CCGTTTACTAGATGA
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Synonyms
Publications