NO03G04360.1, NO03G04360.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO03G04360.1
Unique NameNO03G04360.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length840
Alignment locationchr3:1257548..1259541 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:1257548..1259541 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO03G04360.1 vs.
Match: EWM29788.1 (60s ribosomal protein l11 [Nannochloropsis gaditana])

HSP 1 Score: 349.4 bits (895), Expect = 6.600e-93
Identity = 170/173 (98.27%), Postives = 171/173 (98.84%), Query Frame = 0
Query:    1 MADKKNNPMRELVVEKLILNCCVGESGDRLTRAAKVLEQLSGQTPVYSKARYTVRSFGIRRNEKISVHVTLRGDKANEILDRGLKVKEYELKRKNFSAGGNFGFGITEHIDLGLKYDPSTGIYGMDFYVVLGRKGFRVGRRKLKVGRVGAPHRVTQKDAIDWFQQKFEGIVLG 174
            MADKKNNPMRELVVEKLILNCCVGESGDRLTRAAKVLEQLSGQTPVYSKARYTVRSFGIRRNEKISVHVTLRGDKANEILDRGLKVKEYELK+KNFS  GNFGFGITEHIDLGLKYDPSTGIYGMDFYVVLGRKGFRVGRRKLKVGRVGAPHRVTQKDAIDWFQQKFEGIVLG
Sbjct:   53 MADKKNNPMRELVVEKLILNCCVGESGDRLTRAAKVLEQLSGQTPVYSKARYTVRSFGIRRNEKISVHVTLRGDKANEILDRGLKVKEYELKKKNFSQNGNFGFGITEHIDLGLKYDPSTGIYGMDFYVVLGRKGFRVGRRKLKVGRVGAPHRVTQKDAIDWFQQKFEGIVLG 225          
The following BLAST results are available for this feature:
BLAST of NO03G04360.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29788.16.600e-9398.2760s ribosomal protein l11 [Nannochloropsis gaditan... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO03G04360NO03G04360Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO03G04360.1NO03G04360.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO03G04360.1.cds1NO03G04360.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO03G04360.1.cds2NO03G04360.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO03G04360.1.cds3NO03G04360.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO03G04360.1.cds4NO03G04360.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO03G04360.1 ID=NO03G04360.1|Name=NO03G04360.1|organism=Nannochloropsis oceanica|type=mRNA|length=840bp
CTAGACAGTCGGTTGCTTGAGACGATGGCAGATAAGAAGAACAACCCCAT
GCGGGAGCTTGTGGTGGAGAAGCTGATTCTCAACTGCTGTGTGGGAGAGT
CGGGCGATCGCCTGACGCGCGCCGCCAAGGTGTTGGAGCAGCTGTCGGGG
CAAACCCCCGTCTACTCAAAGGCCCGTTACACCGTCCGCTCCTTCGGCAT
CCGCCGTAACGAGAAGATCTCCGTGCACGTGACCCTGCGAGGGGATAAGG
CCAACGAAATCCTGGACCGTGGCTTAAAGGTGAAGGAGTATGAGTTGAAG
AGGAAAAACTTCTCGGCCGGCGGAAACTTTGGCTTCGGCATTACTGAGCA
CATCGATTTGGGGCTGAAATACGACCCGTCTACCGGCATCTACGGTATGG
ATTTCTACGTCGTGTTGGGCCGCAAGGGTTTCCGTGTAGGGCGCAGGAAG
CTTAAGGTGGGGCGTGTAGGAGCTCCTCACCGAGTGACGCAGAAGGATGC
CATCGACTGGTTCCAGCAGAAGTTTGAGGGCATCGTGTTGGGATAAGTGA
AAGGCAGTTCTGTTAACACGTGAGATGAACCCGCCTGGCCCAAGAGAGGG
AGGGAGAGAGCATCTCCTTAAAAGAAGGGGGTGAAGTATAGGCATGGAGG
CGAGAGATACTATCTTCTGGCGAAGAGGGCAGCAATTTTAGACACCTGGG
AGATGAGGAGCGGGAGGAGTTATTGTCCTGTCTATCTTCTAGGCTCGAGC
AGTGGGGGAGAAGAGAGAGAGAGTGGAGAGCAAGGTACGAGTAGAAGAAC
AGAAAAAACAACAAGAAGAAGATCATCTCCATCATTAACC
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protein sequence of NO03G04360.1

>NO03G04360.1-protein ID=NO03G04360.1-protein|Name=NO03G04360.1|organism=Nannochloropsis oceanica|type=polypeptide|length=174bp
MADKKNNPMRELVVEKLILNCCVGESGDRLTRAAKVLEQLSGQTPVYSKA
RYTVRSFGIRRNEKISVHVTLRGDKANEILDRGLKVKEYELKRKNFSAGG
NFGFGITEHIDLGLKYDPSTGIYGMDFYVVLGRKGFRVGRRKLKVGRVGA
PHRVTQKDAIDWFQQKFEGIVLG*
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mRNA from alignment at chr3:1257548..1259541-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO03G04360.1 ID=NO03G04360.1|Name=NO03G04360.1|organism=Nannochloropsis oceanica|type=mRNA|length=1994bp|location=Sequence derived from alignment at chr3:1257548..1259541- (Nannochloropsis oceanica)
CTAGACAGTCGGTTGCTTGAGACGATGGCAGATAAGAAGAACAACCCCAT GCGGGAGCTTGTGGTAAGTAGGGTGAACTGGGTGGTGGGAATATGTGGAT GGAGGAGGATAGTAGGCAGTCAGCAGGAGGGCAGCGGAAAGCGCGGCAAA GAAGCAATGCGGTGGCTTTTGGAGGCCAGTTATGCTGAGCGAAAAGATAG CAATTGCGTGAAGTTGCGAGGCTTCCACCTCTGGTGTCTGATTTGGTGGC GAAGAGGGTATAGTGCGCGTGCGAACGACCTGGGATGAGAGGACCTTTTC CCTATCCTTTCATTTCGAACCCACCATGAGCTCCACCACGAGCGGTGCCC TTGCAAGATCCACATCAAGTGGAAGCCGCATTGGAGCAAGAAGAGAAACG TCAAGGGCGATGATGTAAAGTCGGACGTGTTGGACTTAACCCGATATCGA AACCGCCATTGCAGCCCCCACCACCATCGCGACGGCAACGCGGCTGGAGG TCAGCATTCAGGAACCAGAATCATGTGCGCGTCGGATGAATCTTATCATT ATGAATGGCCATGTCAAGTAGCTCGGCTGGGGGCATCGCTGCGCTAGGCG GAGGAGAGGGTCGATTTTCGGGTGTTTGATGAGAGAACGTGGCCAAGCCC ACAATCAATTACTTACCTCTTCCTCCCTCCTTCCCTCTCCCCCTTTCCCC CTCCCTTTCCTTCTAGGTGGAGAAGCTGATTCTCAACTGCTGTGTGGGAG AGTCGGGCGATCGCCTGACGCGCGCCGCCAAGGTGTTGGAGCAGCTGTCG GGGCAAACCCCCGTCTACTCAAAGGCCCGTTACACCGTCCGCTCCTTCGG CATCCGCCGTAACGAGAAGATCTCCGTGCACGTGACCCTGCGAGGGGATA AGGCCAACGAAATCCTGGACCGTGGCTTAAAGGTGAAGGAGTATGAGTTG AAGAGGAAAAACTTCTCGGCCGGCGGAAACTTTGGTAAGCCGCAGCAGCA GTTTCTTCGGCGGGCATTGTACCGTGGCGCTTGTGTGTGTGATTAGTGTT TGTCGTACTTGTTAGTGTGGGCATATATCATTTGTCGTATGTGTGTCTGT GTGTGGTCGGTATTGGCGAGGAAGAAACAAATGGGGCTTTATCTCCTTCT GTTCCTGTTGGGGTGCGTGAGAGAGAACGATTTGTCTTTCGGGTAAATAG GTGGCGCAAATGTGGGATACAAATTAATGTCGAGCACAAAGGATACGATT TCGGACTGGCTTTACCTCTATGAGCTTATCTTTTTTCCCCTCCTGCCCTT TCCTCCATCCTTCCAGGCTTCGGCATTACTGAGCACATCGATTTGGGGCT GAAATACGACCCGTCTACCGGCATCTACGGTATGGATTTCTACGTCGTGT TGGGCCGCAAGGGTTTCCGTGTAGGGCGCAGGAAGCTTAAGGTGGGGCGT GTAGGAGCTCCTCACCGAGTGACGCAGAAGGATGCCATCGACTGGTTCCA GCAGAAGTTTGAGGGCATCGGTACGTGCTGCCCCCTCCCCTCCCTCTCTC CCTCTTTTCCTTCCCTTCCTCCCCCTTTCTGTCCCTCCTTCCTTTTCGTT ATCTCTGTCATTTTCACAACCACTGAACTCATGATTATGTCTTTCCCTTG CTCGTTTCTTCCCTCCCCCCTTTCCTCTCTCTACTACAGTGTTGGGATAA GTGAAAGGCAGTTCTGTTAACACGTGAGATGAACCCGCCTGGCCCAAGAG AGGGAGGGAGAGAGCATCTCCTTAAAAGAAGGGGGTGAAGTATAGGCATG GAGGCGAGAGATACTATCTTCTGGCGAAGAGGGCAGCAATTTTAGACACC TGGGAGATGAGGAGCGGGAGGAGTTATTGTCCTGTCTATCTTCTAGGCTC GAGCAGTGGGGGAGAAGAGAGAGAGAGTGGAGAGCAAGGTACGAGTAGAA GAACAGAAAAAACAACAAGAAGAAGATCATCTCCATCATTAACC
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Coding sequence (CDS) from alignment at chr3:1257548..1259541-

>NO03G04360.1 ID=NO03G04360.1|Name=NO03G04360.1|organism=Nannochloropsis oceanica|type=CDS|length=522bp|location=Sequence derived from alignment at chr3:1257548..1259541- (Nannochloropsis oceanica)
ATGGCAGATAAGAAGAACAACCCCATGCGGGAGCTTGTGGTGGAGAAGCT
GATTCTCAACTGCTGTGTGGGAGAGTCGGGCGATCGCCTGACGCGCGCCG
CCAAGGTGTTGGAGCAGCTGTCGGGGCAAACCCCCGTCTACTCAAAGGCC
CGTTACACCGTCCGCTCCTTCGGCATCCGCCGTAACGAGAAGATCTCCGT
GCACGTGACCCTGCGAGGGGATAAGGCCAACGAAATCCTGGACCGTGGCT
TAAAGGTGAAGGAGTATGAGTTGAAGAGGAAAAACTTCTCGGCCGGCGGA
AACTTTGGCTTCGGCATTACTGAGCACATCGATTTGGGGCTGAAATACGA
CCCGTCTACCGGCATCTACGGTATGGATTTCTACGTCGTGTTGGGCCGCA
AGGGTTTCCGTGTAGGGCGCAGGAAGCTTAAGGTGGGGCGTGTAGGAGCT
CCTCACCGAGTGACGCAGAAGGATGCCATCGACTGGTTCCAGCAGAAGTT
TGAGGGCATCGTGTTGGGATAA
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Synonyms
Publications