NO03G04300.1, NO03G04300.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO03G04300.1
Unique NameNO03G04300.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1501
Alignment locationchr3:1242477..1243977 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:1242477..1243977 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO03G04300.1 vs.
Match: EWM29859.1 (uroporphyrinogen decarboxylase [Nannochloropsis gaditana])

HSP 1 Score: 657.9 bits (1696), Expect = 2.200e-185
Identity = 344/443 (77.65%), Postives = 374/443 (84.42%), Query Frame = 0
Query:    7 SRRHQRGAVLFPF-MLVLGSSLHTALAFVPA---------IPSRAATAAHASSSIPLFASAGDATKIINPDHDILLRVARGEQAHRTPVWLMRQAGRYMAAFREYSEKYPFRQRSETPAMAIELSMQPLEAFGVDGVIMFSDILTPLPALGINFDVITGKGPVIPKRIATALDIENLQPLDDPEKSLPFVGETLRTLKKEVAGRATLLGFVGAPFTLAAYTIEGGSSKSCLKIKKMMMYDPTLLHVYLDKLATAIGDYACYQIENGAQVIQVFESWAHQLSPSQFLKYSKPYADKVTAIIKAKYPNVPIIFFGHGGSSYLELQKDMNADMICLDWQVDMTTARKTLGSKPVSGNVDPTILLGPPEGIVAAVDECIGKAGGSGHILNLGHGVIKTTPEEAVKLFVDTAKSIEVKEGGGVEKGGVVGGEEESLLVRPAALAGAAA 440
            S R Q G++L    +L L + L  ALAF P          I S     +  S+  PLFA + D +KI+NPDHDILLRVARGEQ HRTPVWLMRQAGRYMAAFREYSEKYPFRQRSETP+MAIELSMQPLEAFGVDGVIMFSDILTPLPALGI FDVI+GKGPVIP RIATA+D++N++ LDDP  SLPFVGETLRTLK EVAGRATLLGFVGAPFTLAAYTIEGGSSK+CLK K+MMMYDPTLLHVYLDKLATAIGDYACYQIENGA+VIQVFESWAHQLSPSQFLKYSKPYADKVT I+K ++P VPIIFFGHG SS+LELQ DM ADMICLDWQVDM TAR+TLG+KPVSGNVDPT+LLGPPEGIVAAVDEC+ KAGG GHILNLGHGVIKTTPE+AV+LFVDTAKSIE+K     E G    G   S LVRP ALAGA A
Sbjct:    4 SPRPQGGSLLLAVSVLFLSNGLQAALAFSPILRSAVGHDKIQSFVVQESRWSTLSPLFAGSIDGSKIVNPDHDILLRVARGEQTHRTPVWLMRQAGRYMAAFREYSEKYPFRQRSETPSMAIELSMQPLEAFGVDGVIMFSDILTPLPALGIEFDVISGKGPVIPNRIATAMDVDNVRRLDDPASSLPFVGETLRTLKNEVAGRATLLGFVGAPFTLAAYTIEGGSSKNCLKTKRMMMYDPTLLHVYLDKLATAIGDYACYQIENGAEVIQVFESWAHQLSPSQFLKYSKPYADKVTTIVKERHPEVPIIFFGHGASSFLELQGDMAADMICLDWQVDMATARRTLGAKPVSGNVDPTVLLGPPEGIVAAVDECVRKAGGGGHILNLGHGVIKTTPEDAVRLFVDTAKSIELK-AASRESGS--DGPPPSSLVRP-ALAGAGA 442          
The following BLAST results are available for this feature:
BLAST of NO03G04300.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29859.12.200e-18577.65uroporphyrinogen decarboxylase [Nannochloropsis ga... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO03G04300NO03G04300Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO03G04300.1NO03G04300.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO03G04300.1.cds1NO03G04300.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO03G04300.1 ID=NO03G04300.1|Name=NO03G04300.1|organism=Nannochloropsis oceanica|type=mRNA|length=1501bp
AGAGTCAAGGATGACCTCGCGAGCACCATCAAGACGACACCAACGAGGGG
CTGTCCTATTCCCCTTCATGCTTGTCCTCGGCAGCAGTCTACACACTGCC
TTAGCCTTTGTCCCTGCTATTCCCAGCCGTGCAGCTACTGCAGCGCATGC
ATCCTCCTCCATTCCGCTTTTTGCCAGTGCCGGGGACGCCACCAAGATCA
TCAACCCTGACCACGACATTTTGCTGCGAGTGGCGCGGGGCGAGCAGGCT
CACCGCACGCCCGTGTGGCTTATGCGACAGGCGGGGCGGTACATGGCTGC
CTTCCGAGAGTACAGCGAGAAGTACCCTTTCCGGCAACGGTCAGAAACTC
CAGCTATGGCAATTGAGCTATCGATGCAGCCTTTGGAGGCTTTTGGGGTA
GATGGGGTGATCATGTTCTCGGACATCCTCACCCCCCTGCCTGCCTTAGG
CATCAATTTTGACGTGATCACAGGCAAAGGGCCAGTCATCCCCAAGCGAA
TCGCTACAGCCTTAGATATTGAAAACTTGCAGCCATTGGATGATCCTGAG
AAGAGCTTGCCTTTTGTGGGGGAGACCCTGCGGACGCTCAAGAAGGAAGT
GGCGGGGCGAGCAACCCTCCTGGGCTTTGTGGGCGCCCCCTTCACGCTTG
CAGCGTATACTATCGAAGGCGGATCCAGCAAATCCTGTCTGAAAATCAAG
AAGATGATGATGTACGATCCGACCCTACTGCATGTCTACTTGGACAAGCT
GGCCACTGCCATTGGTGACTACGCCTGCTACCAAATCGAAAACGGCGCAC
AAGTAATTCAGGTCTTCGAATCCTGGGCCCATCAGCTCTCTCCTTCCCAA
TTCCTCAAATACAGTAAACCATATGCCGACAAAGTCACGGCCATCATCAA
AGCAAAATACCCGAACGTTCCCATCATCTTCTTTGGGCACGGCGGGAGCT
CGTACTTAGAGTTACAGAAGGACATGAACGCCGATATGATCTGTCTGGAC
TGGCAAGTCGACATGACCACAGCCCGTAAAACCCTCGGCTCGAAGCCCGT
CTCGGGGAATGTGGATCCGACTATTCTCCTAGGACCTCCGGAGGGGATCG
TGGCGGCGGTGGATGAGTGTATCGGAAAAGCGGGTGGATCGGGGCACATC
TTGAATTTGGGCCACGGGGTCATTAAGACCACGCCGGAAGAGGCTGTAAA
GCTGTTCGTTGACACGGCCAAGAGTATTGAGGTGAAGGAGGGAGGGGGAG
TGGAGAAGGGTGGAGTGGTGGGTGGGGAGGAGGAGAGTTTGCTGGTGAGG
CCCGCGGCGTTGGCGGGGGCGGCGGCGTGAATGGGGGGTGGAGGGGGCAG
AGGAAGGGCGAGGGAGGAAGGAGATGCAATGTAGGTACTGGATGAAATAT
GCACCGAGGACGAAAGGGAGAGAGAATGAAAGAAGGAGAATGACTAGTAC
GCGCATCGGGGGGGTGCCTTTCCCACCCCCTTCCCCCCCCCTATTTTATT
T
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protein sequence of NO03G04300.1

>NO03G04300.1-protein ID=NO03G04300.1-protein|Name=NO03G04300.1|organism=Nannochloropsis oceanica|type=polypeptide|length=440bp
MTSRAPSRRHQRGAVLFPFMLVLGSSLHTALAFVPAIPSRAATAAHASSS
IPLFASAGDATKIINPDHDILLRVARGEQAHRTPVWLMRQAGRYMAAFRE
YSEKYPFRQRSETPAMAIELSMQPLEAFGVDGVIMFSDILTPLPALGINF
DVITGKGPVIPKRIATALDIENLQPLDDPEKSLPFVGETLRTLKKEVAGR
ATLLGFVGAPFTLAAYTIEGGSSKSCLKIKKMMMYDPTLLHVYLDKLATA
IGDYACYQIENGAQVIQVFESWAHQLSPSQFLKYSKPYADKVTAIIKAKY
PNVPIIFFGHGGSSYLELQKDMNADMICLDWQVDMTTARKTLGSKPVSGN
VDPTILLGPPEGIVAAVDECIGKAGGSGHILNLGHGVIKTTPEEAVKLFV
DTAKSIEVKEGGGVEKGGVVGGEEESLLVRPAALAGAAA*
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mRNA from alignment at chr3:1242477..1243977-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO03G04300.1 ID=NO03G04300.1|Name=NO03G04300.1|organism=Nannochloropsis oceanica|type=mRNA|length=1501bp|location=Sequence derived from alignment at chr3:1242477..1243977- (Nannochloropsis oceanica)
AGAGTCAAGGATGACCTCGCGAGCACCATCAAGACGACACCAACGAGGGG CTGTCCTATTCCCCTTCATGCTTGTCCTCGGCAGCAGTCTACACACTGCC TTAGCCTTTGTCCCTGCTATTCCCAGCCGTGCAGCTACTGCAGCGCATGC ATCCTCCTCCATTCCGCTTTTTGCCAGTGCCGGGGACGCCACCAAGATCA TCAACCCTGACCACGACATTTTGCTGCGAGTGGCGCGGGGCGAGCAGGCT CACCGCACGCCCGTGTGGCTTATGCGACAGGCGGGGCGGTACATGGCTGC CTTCCGAGAGTACAGCGAGAAGTACCCTTTCCGGCAACGGTCAGAAACTC CAGCTATGGCAATTGAGCTATCGATGCAGCCTTTGGAGGCTTTTGGGGTA GATGGGGTGATCATGTTCTCGGACATCCTCACCCCCCTGCCTGCCTTAGG CATCAATTTTGACGTGATCACAGGCAAAGGGCCAGTCATCCCCAAGCGAA TCGCTACAGCCTTAGATATTGAAAACTTGCAGCCATTGGATGATCCTGAG AAGAGCTTGCCTTTTGTGGGGGAGACCCTGCGGACGCTCAAGAAGGAAGT GGCGGGGCGAGCAACCCTCCTGGGCTTTGTGGGCGCCCCCTTCACGCTTG CAGCGTATACTATCGAAGGCGGATCCAGCAAATCCTGTCTGAAAATCAAG AAGATGATGATGTACGATCCGACCCTACTGCATGTCTACTTGGACAAGCT GGCCACTGCCATTGGTGACTACGCCTGCTACCAAATCGAAAACGGCGCAC AAGTAATTCAGGTCTTCGAATCCTGGGCCCATCAGCTCTCTCCTTCCCAA TTCCTCAAATACAGTAAACCATATGCCGACAAAGTCACGGCCATCATCAA AGCAAAATACCCGAACGTTCCCATCATCTTCTTTGGGCACGGCGGGAGCT CGTACTTAGAGTTACAGAAGGACATGAACGCCGATATGATCTGTCTGGAC TGGCAAGTCGACATGACCACAGCCCGTAAAACCCTCGGCTCGAAGCCCGT CTCGGGGAATGTGGATCCGACTATTCTCCTAGGACCTCCGGAGGGGATCG TGGCGGCGGTGGATGAGTGTATCGGAAAAGCGGGTGGATCGGGGCACATC TTGAATTTGGGCCACGGGGTCATTAAGACCACGCCGGAAGAGGCTGTAAA GCTGTTCGTTGACACGGCCAAGAGTATTGAGGTGAAGGAGGGAGGGGGAG TGGAGAAGGGTGGAGTGGTGGGTGGGGAGGAGGAGAGTTTGCTGGTGAGG CCCGCGGCGTTGGCGGGGGCGGCGGCGTGAATGGGGGGTGGAGGGGGCAG AGGAAGGGCGAGGGAGGAAGGAGATGCAATGTAGGTACTGGATGAAATAT GCACCGAGGACGAAAGGGAGAGAGAATGAAAGAAGGAGAATGACTAGTAC GCGCATCGGGGGGGTGCCTTTCCCACCCCCTTCCCCCCCCCTATTTTATT T
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Coding sequence (CDS) from alignment at chr3:1242477..1243977-

>NO03G04300.1 ID=NO03G04300.1|Name=NO03G04300.1|organism=Nannochloropsis oceanica|type=CDS|length=1320bp|location=Sequence derived from alignment at chr3:1242477..1243977- (Nannochloropsis oceanica)
ATGACCTCGCGAGCACCATCAAGACGACACCAACGAGGGGCTGTCCTATT
CCCCTTCATGCTTGTCCTCGGCAGCAGTCTACACACTGCCTTAGCCTTTG
TCCCTGCTATTCCCAGCCGTGCAGCTACTGCAGCGCATGCATCCTCCTCC
ATTCCGCTTTTTGCCAGTGCCGGGGACGCCACCAAGATCATCAACCCTGA
CCACGACATTTTGCTGCGAGTGGCGCGGGGCGAGCAGGCTCACCGCACGC
CCGTGTGGCTTATGCGACAGGCGGGGCGGTACATGGCTGCCTTCCGAGAG
TACAGCGAGAAGTACCCTTTCCGGCAACGGTCAGAAACTCCAGCTATGGC
AATTGAGCTATCGATGCAGCCTTTGGAGGCTTTTGGGGTAGATGGGGTGA
TCATGTTCTCGGACATCCTCACCCCCCTGCCTGCCTTAGGCATCAATTTT
GACGTGATCACAGGCAAAGGGCCAGTCATCCCCAAGCGAATCGCTACAGC
CTTAGATATTGAAAACTTGCAGCCATTGGATGATCCTGAGAAGAGCTTGC
CTTTTGTGGGGGAGACCCTGCGGACGCTCAAGAAGGAAGTGGCGGGGCGA
GCAACCCTCCTGGGCTTTGTGGGCGCCCCCTTCACGCTTGCAGCGTATAC
TATCGAAGGCGGATCCAGCAAATCCTGTCTGAAAATCAAGAAGATGATGA
TGTACGATCCGACCCTACTGCATGTCTACTTGGACAAGCTGGCCACTGCC
ATTGGTGACTACGCCTGCTACCAAATCGAAAACGGCGCACAAGTAATTCA
GGTCTTCGAATCCTGGGCCCATCAGCTCTCTCCTTCCCAATTCCTCAAAT
ACAGTAAACCATATGCCGACAAAGTCACGGCCATCATCAAAGCAAAATAC
CCGAACGTTCCCATCATCTTCTTTGGGCACGGCGGGAGCTCGTACTTAGA
GTTACAGAAGGACATGAACGCCGATATGATCTGTCTGGACTGGCAAGTCG
ACATGACCACAGCCCGTAAAACCCTCGGCTCGAAGCCCGTCTCGGGGAAT
GTGGATCCGACTATTCTCCTAGGACCTCCGGAGGGGATCGTGGCGGCGGT
GGATGAGTGTATCGGAAAAGCGGGTGGATCGGGGCACATCTTGAATTTGG
GCCACGGGGTCATTAAGACCACGCCGGAAGAGGCTGTAAAGCTGTTCGTT
GACACGGCCAAGAGTATTGAGGTGAAGGAGGGAGGGGGAGTGGAGAAGGG
TGGAGTGGTGGGTGGGGAGGAGGAGAGTTTGCTGGTGAGGCCCGCGGCGT
TGGCGGGGGCGGCGGCGTGA
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Synonyms
Publications