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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr3 | genome | chr3:1242477..1243977 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO03G04300.1 vs.
Match: EWM29859.1 (uroporphyrinogen decarboxylase [Nannochloropsis gaditana]) HSP 1 Score: 657.9 bits (1696), Expect = 2.200e-185 Identity = 344/443 (77.65%), Postives = 374/443 (84.42%), Query Frame = 0
Query: 7 SRRHQRGAVLFPF-MLVLGSSLHTALAFVPA---------IPSRAATAAHASSSIPLFASAGDATKIINPDHDILLRVARGEQAHRTPVWLMRQAGRYMAAFREYSEKYPFRQRSETPAMAIELSMQPLEAFGVDGVIMFSDILTPLPALGINFDVITGKGPVIPKRIATALDIENLQPLDDPEKSLPFVGETLRTLKKEVAGRATLLGFVGAPFTLAAYTIEGGSSKSCLKIKKMMMYDPTLLHVYLDKLATAIGDYACYQIENGAQVIQVFESWAHQLSPSQFLKYSKPYADKVTAIIKAKYPNVPIIFFGHGGSSYLELQKDMNADMICLDWQVDMTTARKTLGSKPVSGNVDPTILLGPPEGIVAAVDECIGKAGGSGHILNLGHGVIKTTPEEAVKLFVDTAKSIEVKEGGGVEKGGVVGGEEESLLVRPAALAGAAA 440
S R Q G++L +L L + L ALAF P I S + S+ PLFA + D +KI+NPDHDILLRVARGEQ HRTPVWLMRQAGRYMAAFREYSEKYPFRQRSETP+MAIELSMQPLEAFGVDGVIMFSDILTPLPALGI FDVI+GKGPVIP RIATA+D++N++ LDDP SLPFVGETLRTLK EVAGRATLLGFVGAPFTLAAYTIEGGSSK+CLK K+MMMYDPTLLHVYLDKLATAIGDYACYQIENGA+VIQVFESWAHQLSPSQFLKYSKPYADKVT I+K ++P VPIIFFGHG SS+LELQ DM ADMICLDWQVDM TAR+TLG+KPVSGNVDPT+LLGPPEGIVAAVDEC+ KAGG GHILNLGHGVIKTTPE+AV+LFVDTAKSIE+K E G G S LVRP ALAGA A
Sbjct: 4 SPRPQGGSLLLAVSVLFLSNGLQAALAFSPILRSAVGHDKIQSFVVQESRWSTLSPLFAGSIDGSKIVNPDHDILLRVARGEQTHRTPVWLMRQAGRYMAAFREYSEKYPFRQRSETPSMAIELSMQPLEAFGVDGVIMFSDILTPLPALGIEFDVISGKGPVIPNRIATAMDVDNVRRLDDPASSLPFVGETLRTLKNEVAGRATLLGFVGAPFTLAAYTIEGGSSKNCLKTKRMMMYDPTLLHVYLDKLATAIGDYACYQIENGAEVIQVFESWAHQLSPSQFLKYSKPYADKVTTIVKERHPEVPIIFFGHGASSFLELQGDMAADMICLDWQVDMATARRTLGAKPVSGNVDPTVLLGPPEGIVAAVDECVRKAGGGGHILNLGHGVIKTTPEDAVRLFVDTAKSIELK-AASRESGS--DGPPPSSLVRP-ALAGAGA 442
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO03G04300.1 ID=NO03G04300.1|Name=NO03G04300.1|organism=Nannochloropsis oceanica|type=mRNA|length=1501bp AGAGTCAAGGATGACCTCGCGAGCACCATCAAGACGACACCAACGAGGGG CTGTCCTATTCCCCTTCATGCTTGTCCTCGGCAGCAGTCTACACACTGCC TTAGCCTTTGTCCCTGCTATTCCCAGCCGTGCAGCTACTGCAGCGCATGC ATCCTCCTCCATTCCGCTTTTTGCCAGTGCCGGGGACGCCACCAAGATCA TCAACCCTGACCACGACATTTTGCTGCGAGTGGCGCGGGGCGAGCAGGCT CACCGCACGCCCGTGTGGCTTATGCGACAGGCGGGGCGGTACATGGCTGC CTTCCGAGAGTACAGCGAGAAGTACCCTTTCCGGCAACGGTCAGAAACTC CAGCTATGGCAATTGAGCTATCGATGCAGCCTTTGGAGGCTTTTGGGGTA GATGGGGTGATCATGTTCTCGGACATCCTCACCCCCCTGCCTGCCTTAGG CATCAATTTTGACGTGATCACAGGCAAAGGGCCAGTCATCCCCAAGCGAA TCGCTACAGCCTTAGATATTGAAAACTTGCAGCCATTGGATGATCCTGAG AAGAGCTTGCCTTTTGTGGGGGAGACCCTGCGGACGCTCAAGAAGGAAGT GGCGGGGCGAGCAACCCTCCTGGGCTTTGTGGGCGCCCCCTTCACGCTTG CAGCGTATACTATCGAAGGCGGATCCAGCAAATCCTGTCTGAAAATCAAG AAGATGATGATGTACGATCCGACCCTACTGCATGTCTACTTGGACAAGCT GGCCACTGCCATTGGTGACTACGCCTGCTACCAAATCGAAAACGGCGCAC AAGTAATTCAGGTCTTCGAATCCTGGGCCCATCAGCTCTCTCCTTCCCAA TTCCTCAAATACAGTAAACCATATGCCGACAAAGTCACGGCCATCATCAA AGCAAAATACCCGAACGTTCCCATCATCTTCTTTGGGCACGGCGGGAGCT CGTACTTAGAGTTACAGAAGGACATGAACGCCGATATGATCTGTCTGGAC TGGCAAGTCGACATGACCACAGCCCGTAAAACCCTCGGCTCGAAGCCCGT CTCGGGGAATGTGGATCCGACTATTCTCCTAGGACCTCCGGAGGGGATCG TGGCGGCGGTGGATGAGTGTATCGGAAAAGCGGGTGGATCGGGGCACATC TTGAATTTGGGCCACGGGGTCATTAAGACCACGCCGGAAGAGGCTGTAAA GCTGTTCGTTGACACGGCCAAGAGTATTGAGGTGAAGGAGGGAGGGGGAG TGGAGAAGGGTGGAGTGGTGGGTGGGGAGGAGGAGAGTTTGCTGGTGAGG CCCGCGGCGTTGGCGGGGGCGGCGGCGTGAATGGGGGGTGGAGGGGGCAG AGGAAGGGCGAGGGAGGAAGGAGATGCAATGTAGGTACTGGATGAAATAT GCACCGAGGACGAAAGGGAGAGAGAATGAAAGAAGGAGAATGACTAGTAC GCGCATCGGGGGGGTGCCTTTCCCACCCCCTTCCCCCCCCCTATTTTATT T back to topprotein sequence of NO03G04300.1 >NO03G04300.1-protein ID=NO03G04300.1-protein|Name=NO03G04300.1|organism=Nannochloropsis oceanica|type=polypeptide|length=440bp MTSRAPSRRHQRGAVLFPFMLVLGSSLHTALAFVPAIPSRAATAAHASSS IPLFASAGDATKIINPDHDILLRVARGEQAHRTPVWLMRQAGRYMAAFRE YSEKYPFRQRSETPAMAIELSMQPLEAFGVDGVIMFSDILTPLPALGINF DVITGKGPVIPKRIATALDIENLQPLDDPEKSLPFVGETLRTLKKEVAGR ATLLGFVGAPFTLAAYTIEGGSSKSCLKIKKMMMYDPTLLHVYLDKLATA IGDYACYQIENGAQVIQVFESWAHQLSPSQFLKYSKPYADKVTAIIKAKY PNVPIIFFGHGGSSYLELQKDMNADMICLDWQVDMTTARKTLGSKPVSGN VDPTILLGPPEGIVAAVDECIGKAGGSGHILNLGHGVIKTTPEEAVKLFV DTAKSIEVKEGGGVEKGGVVGGEEESLLVRPAALAGAAA* back to topmRNA from alignment at chr3:1242477..1243977- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO03G04300.1 ID=NO03G04300.1|Name=NO03G04300.1|organism=Nannochloropsis oceanica|type=mRNA|length=1501bp|location=Sequence derived from alignment at chr3:1242477..1243977- (Nannochloropsis oceanica) AGAGTCAAGGATGACCTCGCGAGCACCATCAAGACGACACCAACGAGGGG
CTGTCCTATTCCCCTTCATGCTTGTCCTCGGCAGCAGTCTACACACTGCC
TTAGCCTTTGTCCCTGCTATTCCCAGCCGTGCAGCTACTGCAGCGCATGC
ATCCTCCTCCATTCCGCTTTTTGCCAGTGCCGGGGACGCCACCAAGATCA
TCAACCCTGACCACGACATTTTGCTGCGAGTGGCGCGGGGCGAGCAGGCT
CACCGCACGCCCGTGTGGCTTATGCGACAGGCGGGGCGGTACATGGCTGC
CTTCCGAGAGTACAGCGAGAAGTACCCTTTCCGGCAACGGTCAGAAACTC
CAGCTATGGCAATTGAGCTATCGATGCAGCCTTTGGAGGCTTTTGGGGTA
GATGGGGTGATCATGTTCTCGGACATCCTCACCCCCCTGCCTGCCTTAGG
CATCAATTTTGACGTGATCACAGGCAAAGGGCCAGTCATCCCCAAGCGAA
TCGCTACAGCCTTAGATATTGAAAACTTGCAGCCATTGGATGATCCTGAG
AAGAGCTTGCCTTTTGTGGGGGAGACCCTGCGGACGCTCAAGAAGGAAGT
GGCGGGGCGAGCAACCCTCCTGGGCTTTGTGGGCGCCCCCTTCACGCTTG
CAGCGTATACTATCGAAGGCGGATCCAGCAAATCCTGTCTGAAAATCAAG
AAGATGATGATGTACGATCCGACCCTACTGCATGTCTACTTGGACAAGCT
GGCCACTGCCATTGGTGACTACGCCTGCTACCAAATCGAAAACGGCGCAC
AAGTAATTCAGGTCTTCGAATCCTGGGCCCATCAGCTCTCTCCTTCCCAA
TTCCTCAAATACAGTAAACCATATGCCGACAAAGTCACGGCCATCATCAA
AGCAAAATACCCGAACGTTCCCATCATCTTCTTTGGGCACGGCGGGAGCT
CGTACTTAGAGTTACAGAAGGACATGAACGCCGATATGATCTGTCTGGAC
TGGCAAGTCGACATGACCACAGCCCGTAAAACCCTCGGCTCGAAGCCCGT
CTCGGGGAATGTGGATCCGACTATTCTCCTAGGACCTCCGGAGGGGATCG
TGGCGGCGGTGGATGAGTGTATCGGAAAAGCGGGTGGATCGGGGCACATC
TTGAATTTGGGCCACGGGGTCATTAAGACCACGCCGGAAGAGGCTGTAAA
GCTGTTCGTTGACACGGCCAAGAGTATTGAGGTGAAGGAGGGAGGGGGAG
TGGAGAAGGGTGGAGTGGTGGGTGGGGAGGAGGAGAGTTTGCTGGTGAGG
CCCGCGGCGTTGGCGGGGGCGGCGGCGTGAATGGGGGGTGGAGGGGGCAG
AGGAAGGGCGAGGGAGGAAGGAGATGCAATGTAGGTACTGGATGAAATAT
GCACCGAGGACGAAAGGGAGAGAGAATGAAAGAAGGAGAATGACTAGTAC
GCGCATCGGGGGGGTGCCTTTCCCACCCCCTTCCCCCCCCCTATTTTATT
T back to topCoding sequence (CDS) from alignment at chr3:1242477..1243977- >NO03G04300.1 ID=NO03G04300.1|Name=NO03G04300.1|organism=Nannochloropsis oceanica|type=CDS|length=1320bp|location=Sequence derived from alignment at chr3:1242477..1243977- (Nannochloropsis oceanica) ATGACCTCGCGAGCACCATCAAGACGACACCAACGAGGGGCTGTCCTATT CCCCTTCATGCTTGTCCTCGGCAGCAGTCTACACACTGCCTTAGCCTTTG TCCCTGCTATTCCCAGCCGTGCAGCTACTGCAGCGCATGCATCCTCCTCC ATTCCGCTTTTTGCCAGTGCCGGGGACGCCACCAAGATCATCAACCCTGA CCACGACATTTTGCTGCGAGTGGCGCGGGGCGAGCAGGCTCACCGCACGC CCGTGTGGCTTATGCGACAGGCGGGGCGGTACATGGCTGCCTTCCGAGAG TACAGCGAGAAGTACCCTTTCCGGCAACGGTCAGAAACTCCAGCTATGGC AATTGAGCTATCGATGCAGCCTTTGGAGGCTTTTGGGGTAGATGGGGTGA TCATGTTCTCGGACATCCTCACCCCCCTGCCTGCCTTAGGCATCAATTTT GACGTGATCACAGGCAAAGGGCCAGTCATCCCCAAGCGAATCGCTACAGC CTTAGATATTGAAAACTTGCAGCCATTGGATGATCCTGAGAAGAGCTTGC CTTTTGTGGGGGAGACCCTGCGGACGCTCAAGAAGGAAGTGGCGGGGCGA GCAACCCTCCTGGGCTTTGTGGGCGCCCCCTTCACGCTTGCAGCGTATAC TATCGAAGGCGGATCCAGCAAATCCTGTCTGAAAATCAAGAAGATGATGA TGTACGATCCGACCCTACTGCATGTCTACTTGGACAAGCTGGCCACTGCC ATTGGTGACTACGCCTGCTACCAAATCGAAAACGGCGCACAAGTAATTCA GGTCTTCGAATCCTGGGCCCATCAGCTCTCTCCTTCCCAATTCCTCAAAT ACAGTAAACCATATGCCGACAAAGTCACGGCCATCATCAAAGCAAAATAC CCGAACGTTCCCATCATCTTCTTTGGGCACGGCGGGAGCTCGTACTTAGA GTTACAGAAGGACATGAACGCCGATATGATCTGTCTGGACTGGCAAGTCG ACATGACCACAGCCCGTAAAACCCTCGGCTCGAAGCCCGTCTCGGGGAAT GTGGATCCGACTATTCTCCTAGGACCTCCGGAGGGGATCGTGGCGGCGGT GGATGAGTGTATCGGAAAAGCGGGTGGATCGGGGCACATCTTGAATTTGG GCCACGGGGTCATTAAGACCACGCCGGAAGAGGCTGTAAAGCTGTTCGTT GACACGGCCAAGAGTATTGAGGTGAAGGAGGGAGGGGGAGTGGAGAAGGG TGGAGTGGTGGGTGGGGAGGAGGAGAGTTTGCTGGTGAGGCCCGCGGCGT TGGCGGGGGCGGCGGCGTGA back to top
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