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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| chr3 | genome | chr3:1225687..1228272 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO03G04250.3 vs.
Match: OQR90523.1 (hypothetical protein THRCLA_09308 [Thraustotheca clavata]) HSP 1 Score: 244.6 bits (623), Expect = 5.300e-61 Identity = 141/303 (46.53%), Postives = 197/303 (65.02%), Query Frame = 0
Query: 96 LGEWSATALCGNDLLSSCLYTIGLVTQKAGKAAPLSFIFVSLVLYLIKNVYAMAVLSFPQNGGSYNVLAHVAPRPLAVLAATLSIISYIATCVVSAVSACDYLSKVIDMNSPVLASVLLLLFFAALVLTGLKESSSIALGIFLVHGITLLVLAVSCFAVATSQGFSVLWLNIDQ-PYPKITMAGSEMSSSLGIALFLGFSSAMLGVSGYETTAQCIEHLHSETFIKCLWNLWVGVTVINPLLSFLAISILPIPEINANSDTVLSRMAMVSGEWIFGEGSSMAQLFTDWMSLEAFCVLSGGMLS 398
L EW ATA+CGND+LSSCLY GLVT KAGK APL + V+ +LYL + +Y V + P NGGSYNVL + + +A +AA+L+I+SYIAT VVS SAC YLS + S V AS+ LL FFA L G+ ES+ +AL IF++H +TL+VL V FS+L+ N+ Q +P++ +AG+ +S + ALF G S+AMLG+SG+E+++Q ++ F K L N+W GV V NPLLSFL++ ++P+ IN +TVLS+MA+V G Q +S++AF VLSG +L+
Sbjct: 67 LSEWPATAICGNDILSSCLYVSGLVTAKAGKLAPLDLVLVAGILYLYRFIYGEVVNAIPMNGGSYNVLLNTTSKRVASIAASLAILSYIATGVVSGTSACTYLSATVPTLSVVPASIGLLFFFAVLTCMGISESAMVALVIFIIHTLTLVVLCVMSVLFMAKNNFSILYENLFQTDFPEVNVAGTWVSGDVFTALFFGTSTAMLGISGFESSSQFVQEQAPGVFPKTLKNMWWGVAVFNPLLSFLSLGVMPMSNINMFKNTVLSQMALVVG----------GQTLQTIVSIDAFIVLSGAVLT 359
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO03G04250.3 ID=NO03G04250.3|Name=NO03G04250.3|organism=Nannochloropsis oceanica|type=mRNA|length=2334bp
ATGCACTTTTTGGTTCATGGACTGCTCGCGTGAGCAGACGAGCAAATCAA
AATACTGATTGTCATCCTCCTTCGTCCTTAAACCCAAACAGCAAATCCAT
CAAATGTCTTGGGGGTTGATGGCTCTCATGTGACCAGTCCGATCTCAGCG
CGACAACGAAGTATGTCGAGGAAGGCACCAGGCTTTGTTCATAGCAGCGA
CAACGGAAGCAGTAGCTACAGCAGTGGGAGTTGTAGCAGCAACAGCAGCA
GCGCTGGTAGCAATACGGGACGACCAAGCATCGGCGAGATACGTGACTGG
TCTGCCTTGGATCAGAAGCTGGTGGAAGAAGGTGTCCCAGGAATTATGAT
CGAAAAGCCAGGAAGGATGTCAGAAAGAGGAAAGGAGGGAGGGCGGAGAA
AAGGTGAGAGCACCAGCGAGTGTGGCGGTCCGGAAAAGAAAAACATGTTG
GGAGAGTGGTCGGCAACAGCATTGTGCGGAAATGACCTGCTGTCCTCCTG
CCTCTATACAATCGGACTGGTGACGCAAAAAGCGGGAAAGGCAGCGCCTC
TGTCTTTCATTTTTGTCTCTCTTGTATTGTATCTTATTAAAAACGTGTAC
GCGATGGCCGTGCTTTCCTTCCCTCAAAACGGTGGCAGCTACAATGTCTT
GGCACATGTTGCTCCCCGACCCTTGGCAGTGTTGGCGGCCACTCTTTCCA
TTATCAGTTATATTGCTACGTGTGTGGTGTCTGCTGTGAGTGCATGTGAT
TACCTGAGTAAGGTGATTGACATGAATTCTCCTGTCTTAGCTTCCGTTCT
TCTTCTCCTCTTCTTCGCTGCCTTGGTCTTGACGGGACTTAAAGAGTCTT
CGAGCATTGCCTTGGGTATTTTCCTCGTGCACGGTATCACCCTCTTGGTA
CTGGCTGTCAGTTGTTTTGCCGTTGCTACCTCACAAGGCTTTTCGGTCCT
GTGGCTTAATATTGACCAGCCTTACCCGAAGATCACGATGGCGGGAAGTG
AGATGTCTTCTTCGTTAGGGATAGCACTATTTTTGGGATTCTCATCAGCG
ATGTTGGGTGTGAGTGGTTATGAAACGACGGCACAATGCATCGAACACCT
CCACTCCGAGACATTCATCAAATGTCTGTGGAATCTCTGGGTTGGCGTGA
CAGTCATCAATCCCCTTCTCTCCTTCCTTGCCATCTCCATCCTTCCAATC
CCTGAGATCAATGCTAACAGTGATACTGTTTTGAGCCGCATGGCCATGGT
GTCAGGGGAGTGGATATTCGGAGAGGGAAGCTCGATGGCCCAGTTGTTTA
CAGATTGGATGTCGCTTGAGGCTTTTTGTGTCCTTAGTGGAGGTATGCTG
AGCTACTCAACGTCTTGAGCATGCCATATTTCTCTCTCAAACTCTCTCCC
CCTCTTCAGTCTTCTCACCATCCATTCTTTCACTCCCTCTATCGACCTTG
CTTCCCTTATCAGCGGTCCTCACGGCCTTCGTCGGACTTGATGGCCTCGT
CTTTCAAATGTCCCTTGACAAATGTCTTCCCGGCGTTTTCCTCCGAAAAA
ATGGATGGCGTGGCACAAATCACTATATCATCTTCACCTTTCTCCTTCTG
TGCATCGCACTCATCGTGGCCATGGACGGCAAAGTCACTGAGCTCGCTGG
AATGTATTCCATGGCTTTTCTAGGTGTCCTCGCAACCTTTATAATGGGGA
GTATGCTCTTGAAAAACTCCCCCAAACACATCCCTTTGCTTATCGCAAAA
GGTCTGACGGTCAAGTGGTGGACACTTTGTCTATCTCTAGCCCTGATTTG
CATCTCTCTTCTGGGGAACCTACTTGGGAGCTCAAGTGTTATCATCTCTT
TCCTCTCGTATTTTCTCCCGATTTATGGGATATGCCTCATCTGTCTTTAT
GCGGATAAAGCGCGATTAGTCTGTTGTCCGGGTAGCATGACAGCCACGAG
ACTCTGCCAGATATTGGTGAAAAGTGATCCGAAGGCGATCAGTCCTAGGG
AGCGCGTAAGGATAACGCTGAAGGACATTGCGCTGGGTACATTGGACAGA
GATGATACGTCTTCCCCCTCATCCTCATCCTCATCTTCGACCTCACTGTC
GTCTGCGTCTTCCTCAACCTCGCCGAGATATAAATCTGACGGGATTTCGA
TAGCTTAGTCGCCGTCGCCAAAGGTGTGGAAACAAAAATAAGGAGGAAAG
ATGACGGCGAAGAAAAAAAAGTAAACAGACGTAAAAGAAAAAACAGTCAG
CGTACGTAGAGATGTTGTAATAAGGTCCTCGCAATCTCCTCATGCTGAAG
ATATTCCTTCAGAGACATGGCCACCAAGAGCAAT back to topprotein sequence of NO03G04250.3 >NO03G04250.3-protein ID=NO03G04250.3-protein|Name=NO03G04250.3|organism=Nannochloropsis oceanica|type=polypeptide|length=402bp
MSRKAPGFVHSSDNGSSSYSSGSCSSNSSSAGSNTGRPSIGEIRDWSALD
QKLVEEGVPGIMIEKPGRMSERGKEGGRRKGESTSECGGPEKKNMLGEWS
ATALCGNDLLSSCLYTIGLVTQKAGKAAPLSFIFVSLVLYLIKNVYAMAV
LSFPQNGGSYNVLAHVAPRPLAVLAATLSIISYIATCVVSAVSACDYLSK
VIDMNSPVLASVLLLLFFAALVLTGLKESSSIALGIFLVHGITLLVLAVS
CFAVATSQGFSVLWLNIDQPYPKITMAGSEMSSSLGIALFLGFSSAMLGV
SGYETTAQCIEHLHSETFIKCLWNLWVGVTVINPLLSFLAISILPIPEIN
ANSDTVLSRMAMVSGEWIFGEGSSMAQLFTDWMSLEAFCVLSGGMLSYST
S* back to topmRNA from alignment at chr3:1225687..1228272- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO03G04250.3 ID=NO03G04250.3|Name=NO03G04250.3|organism=Nannochloropsis oceanica|type=mRNA|length=2586bp|location=Sequence derived from alignment at chr3:1225687..1228272- (Nannochloropsis oceanica)
ATGCACTTTTTGGTTCATGGACTGCTCGCGTGAGCAGACGAGCAAATCAA
AATACTGATTGTCATCCTCCTTCGTCCTTAAACCCAAACAGCAAATCCAT
CAAATGTCTTGGGGGTTGATGGCTCTCATGTGACCAGTCCGATCTCAGCG
CGACAACGAAGTATGTCGAGGAAGGCACCAGGCTTTGTTCATAGCAGCGA
CAACGGAAGCAGTAGCTACAGCAGTGGGAGTTGTAGCAGCAACAGCAGCA
GCGCTGGTAGCAATACGGGACGACCAAGCATCGGCGAGATACGTGACTGG
TCTGCCTTGGATCAGAAGCTGGTGGAAGAAGGTGTCCCAGGAATTATGAT
CGAAAAGCCAGGAAGGATGTCAGAAAGAGGAAAGGAGGGAGGGCGGAGAA
AAGGTGAGAGCACCAGCGAGTGTGGCGGTCCGGAAAAGAAAAACATGTTG
GGAGAGTGGTCGGCAACAGCATTGTGCGGAAATGACCTGCTGTCCTCCTG
CCTCTATACAATCGGACTGGTGACGCAAAAAGCGGGAAAGGCAGCGCCTC
TGTCTTTCATTTTTGTCTCTCTTGTATTGTATCTTATTAAAAACGTGTAC
GCGATGGCCGTGCTTTCCTTCCCTCAAAACGGTGGCAGCTACAATGTCTT
GGCACATGTTGCTCCCCGACCCTTGGCAGTGTTGGCGGCCACTCTTTCCA
TTATCAGTTATATTGCTACGTGTGTGGTGTCTGCTGTGAGTGCATGTGAT
TACCTGAGTAAGGTGATTGACATGAATTCTCCTGTCTTAGCTTCCGTTCT
TCTTCTCCTCTTCTTCGCTGCCTTGGTCTTGACGGGACTTAAAGAGTCTT
CGAGCATTGCCTTGGGTATTTTCCTCGTGCACGGTATCACCCTCTTGGTA
CTGGCTGTCAGTTGTTTTGCCGTTGCTACCTCACAAGGCTTTTCGGTCCT
GTGGCTTAATATTGACCAGCCTTACCCGAAGATCACGATGGCGGGAAGTG
AGATGTCTTCTTCGTTAGGGATAGCACTATTTTTGGGATTCTCATCAGCG
ATGTTGGGTGTGAGTGGTTATGAAACGACGGTAAGTTAGAGGTTCGGAGG
GCGGATGGCTGAATATTGTGGCTGTTTGGGGTTTGAAAACCTTTACGTTT
AAGGATCGCTTAAATGTGCAGCATGCTTTTACGTCTGTGTCTATCAATGG
TCAAACTTCCATATTTTGGATTGTGTCATATTTGTGTCCTATCTCTCGAA
TTTCCTTTTTTTCACACATCTCTCTGCCTCCCCTCTCACCCTCTCACCCT
TCCTCGCTTTCTTTCTTCCTGCCGCCTCTTAGGCACAATGCATCGAACAC
CTCCACTCCGAGACATTCATCAAATGTCTGTGGAATCTCTGGGTTGGCGT
GACAGTCATCAATCCCCTTCTCTCCTTCCTTGCCATCTCCATCCTTCCAA
TCCCTGAGATCAATGCTAACAGTGATACTGTTTTGAGCCGCATGGCCATG
GTGTCAGGGGAGTGGATATTCGGAGAGGGAAGCTCGATGGCCCAGTTGTT
TACAGATTGGATGTCGCTTGAGGCTTTTTGTGTCCTTAGTGGAGGTATGC
TGAGCTACTCAACGTCTTGAGCATGCCATATTTCTCTCTCAAACTCTCTC
CCCCTCTTCAGTCTTCTCACCATCCATTCTTTCACTCCCTCTATCGACCT
TGCTTCCCTTATCAGCGGTCCTCACGGCCTTCGTCGGACTTGATGGCCTC
GTCTTTCAAATGTCCCTTGACAAATGTCTTCCCGGCGTTTTCCTCCGAAA
AAATGGATGGCGTGGCACAAATCACTATATCATCTTCACCTTTCTCCTTC
TGTGCATCGCACTCATCGTGGCCATGGACGGCAAAGTCACTGAGCTCGCT
GGAATGTATTCCATGGCTTTTCTAGGTGTCCTCGCAACCTTTATAATGGG
GAGTATGCTCTTGAAAAACTCCCCCAAACACATCCCTTTGCTTATCGCAA
AAGGTCTGACGGTCAAGTGGTGGACACTTTGTCTATCTCTAGCCCTGATT
TGCATCTCTCTTCTGGGGAACCTACTTGGGAGCTCAAGTGTTATCATCTC
TTTCCTCTCGTATTTTCTCCCGATTTATGGGATATGCCTCATCTGTCTTT
ATGCGGATAAAGCGCGATTAGTCTGTTGTCCGGGTAGCATGACAGCCACG
AGACTCTGCCAGATATTGGTGAAAAGTGATCCGAAGGCGATCAGTCCTAG
GGAGCGCGTAAGGATAACGCTGAAGGACATTGCGCTGGGTACATTGGACA
GAGATGATACGTCTTCCCCCTCATCCTCATCCTCATCTTCGACCTCACTG
TCGTCTGCGTCTTCCTCAACCTCGCCGAGATATAAATCTGACGGGATTTC
GATAGCTTAGTCGCCGTCGCCAAAGGTGTGGAAACAAAAATAAGGAGGAA
AGATGACGGCGAAGAAAAAAAAGTAAACAGACGTAAAAGAAAAAACAGTC
AGCGTACGTAGAGATGTTGTAATAAGGTCCTCGCAATCTCCTCATGCTGA
AGATATTCCTTCAGAGACATGGCCACCAAGAGCAAT back to topCoding sequence (CDS) from alignment at chr3:1225687..1228272- >NO03G04250.3 ID=NO03G04250.3|Name=NO03G04250.3|organism=Nannochloropsis oceanica|type=CDS|length=1206bp|location=Sequence derived from alignment at chr3:1225687..1228272- (Nannochloropsis oceanica)
ATGTCGAGGAAGGCACCAGGCTTTGTTCATAGCAGCGACAACGGAAGCAG
TAGCTACAGCAGTGGGAGTTGTAGCAGCAACAGCAGCAGCGCTGGTAGCA
ATACGGGACGACCAAGCATCGGCGAGATACGTGACTGGTCTGCCTTGGAT
CAGAAGCTGGTGGAAGAAGGTGTCCCAGGAATTATGATCGAAAAGCCAGG
AAGGATGTCAGAAAGAGGAAAGGAGGGAGGGCGGAGAAAAGGTGAGAGCA
CCAGCGAGTGTGGCGGTCCGGAAAAGAAAAACATGTTGGGAGAGTGGTCG
GCAACAGCATTGTGCGGAAATGACCTGCTGTCCTCCTGCCTCTATACAAT
CGGACTGGTGACGCAAAAAGCGGGAAAGGCAGCGCCTCTGTCTTTCATTT
TTGTCTCTCTTGTATTGTATCTTATTAAAAACGTGTACGCGATGGCCGTG
CTTTCCTTCCCTCAAAACGGTGGCAGCTACAATGTCTTGGCACATGTTGC
TCCCCGACCCTTGGCAGTGTTGGCGGCCACTCTTTCCATTATCAGTTATA
TTGCTACGTGTGTGGTGTCTGCTGTGAGTGCATGTGATTACCTGAGTAAG
GTGATTGACATGAATTCTCCTGTCTTAGCTTCCGTTCTTCTTCTCCTCTT
CTTCGCTGCCTTGGTCTTGACGGGACTTAAAGAGTCTTCGAGCATTGCCT
TGGGTATTTTCCTCGTGCACGGTATCACCCTCTTGGTACTGGCTGTCAGT
TGTTTTGCCGTTGCTACCTCACAAGGCTTTTCGGTCCTGTGGCTTAATAT
TGACCAGCCTTACCCGAAGATCACGATGGCGGGAAGTGAGATGTCTTCTT
CGTTAGGGATAGCACTATTTTTGGGATTCTCATCAGCGATGTTGGGTGTG
AGTGGTTATGAAACGACGGCACAATGCATCGAACACCTCCACTCCGAGAC
ATTCATCAAATGTCTGTGGAATCTCTGGGTTGGCGTGACAGTCATCAATC
CCCTTCTCTCCTTCCTTGCCATCTCCATCCTTCCAATCCCTGAGATCAAT
GCTAACAGTGATACTGTTTTGAGCCGCATGGCCATGGTGTCAGGGGAGTG
GATATTCGGAGAGGGAAGCTCGATGGCCCAGTTGTTTACAGATTGGATGT
CGCTTGAGGCTTTTTGTGTCCTTAGTGGAGGTATGCTGAGCTACTCAACG
TCTTGA back to top
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