NO03G04120.1, NO03G04120.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO03G04120.1
Unique NameNO03G04120.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1099
Alignment locationchr3:1196623..1197721 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:1196623..1197721 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO03G04120.1 vs.
Match: EWM29881.1 (hypothetical protein Naga_100106g20 [Nannochloropsis gaditana])

HSP 1 Score: 404.4 bits (1038), Expect = 3.400e-109
Identity = 214/326 (65.64%), Postives = 239/326 (73.31%), Query Frame = 0
Query:   23 VHHAFNPPSSPLLPLPASSRAKPMERRDLLKDGLLLLGGVMGLGLPAAALIHPRSASAATGAAVPHTVDYTAFQKKLFQKPPGLLTYPAWMEGEWQVSCKFIGADFPSSAAEASPFVPKGRIVSDTGLPGFRRLSIAMVPDVGKDHAFRMRFVSKN-----GGRVEEDKIFNLKNALESELGKAAVTTIEYNPDKNPNRASLNLLPGASPNAQRIELFWNARSVLPSPP-------GPDSSSSTGS------FRFLEDVRQVSLTPQLAETSTVGDYRHLWEFYPAGPGLIKAYLSTVAYATPQDPLFQTSGLQPLVVYFHLLTMR 331
            + +   P S P  PL        ++R  LL + LL+ GG   LGL ++ +     A A T   + HTV+YTAFQKK FQKPPG L YP+WMEGEW VSC+FIGADFPSSAA ++PFVP+ RI +DT LPGFRRLSIAMVPDVGKDH FRMRF+  N      G V EDK+FNLK ALESELGKA VT I+YNP KNPNRASL LLPG+SPNAQRIELFWNARS LPSPP       GP  SSS  S      FRF+ED+RQVSLTPQLAETS+VGDYRHLWEFY  GP  IK YLSTVAY TPQ PLFQT+GLQPLVVYFH LTMR
Sbjct:   52 IQYGAEPSSWPCSPL--------VDRHRLLNNALLIAGGST-LGL-SSQMTSTLPAWAFTDVNIRHTVNYTAFQKKFFQKPPGFLAYPSWMEGEWHVSCRFIGADFPSSAANSNPFVPRERIAADTSLPGFRRLSIAMVPDVGKDHDFRMRFLRPNVEGIGTGEVREDKVFNLKQALESELGKATVTNIDYNPAKNPNRASLALLPGSSPNAQRIELFWNARSSLPSPPLETDTTTGPPGSSSGSSSSSQDVFRFVEDIRQVSLTPQLAETSSVGDYRHLWEFYHIGPESIKTYLSTVAYTTPQGPLFQTAGLQPLVVYFHTLTMR 367          
The following BLAST results are available for this feature:
BLAST of NO03G04120.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29881.13.400e-10965.64hypothetical protein Naga_100106g20 [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO03G04120NO03G04120Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO03G04120.1NO03G04120.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO03G04120.1.cds1NO03G04120.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO03G04120.1 ID=NO03G04120.1|Name=NO03G04120.1|organism=Nannochloropsis oceanica|type=mRNA|length=1099bp
ACACACAGAGAGAGTTATGACAACCATGCATTGTCTTGCTCGTCTTGATC
TGCTTGGCTTGCTATTGTTTGTTGTTTGTCAAGTGCATCATGCATTCAAT
CCCCCGTCATCGCCTCTACTACCACTTCCTGCCTCGTCACGGGCCAAGCC
GATGGAGCGTCGCGACCTGCTGAAGGACGGTCTGCTGCTCCTCGGAGGAG
TCATGGGTCTTGGCCTGCCTGCTGCTGCACTTATACACCCACGCTCCGCC
TCAGCTGCCACCGGCGCCGCAGTGCCGCATACGGTCGATTACACAGCCTT
TCAAAAGAAGCTTTTCCAAAAACCGCCGGGCCTGCTCACCTACCCCGCGT
GGATGGAGGGGGAATGGCAGGTGTCTTGCAAATTCATTGGGGCTGACTTT
CCGTCTTCTGCTGCCGAGGCCTCGCCCTTCGTGCCAAAAGGCCGCATTGT
GTCCGACACGGGCTTGCCTGGGTTTCGTCGATTGAGCATTGCCATGGTCC
CGGACGTGGGTAAAGACCACGCATTTCGCATGCGATTCGTGTCGAAGAAT
GGAGGACGGGTGGAGGAAGACAAGATATTCAATCTCAAGAACGCTTTGGA
GTCAGAGTTGGGTAAAGCAGCTGTCACTACCATTGAGTACAATCCTGACA
AGAACCCAAACCGTGCCTCGCTTAACCTCTTGCCGGGTGCCAGTCCCAAT
GCGCAGCGTATCGAACTCTTCTGGAATGCTCGCTCGGTCTTGCCATCACC
ACCAGGGCCAGATAGCAGCAGTAGCACCGGCTCTTTTCGTTTCCTCGAAG
ACGTACGACAGGTATCCTTGACGCCCCAGCTTGCCGAGACAAGCACGGTG
GGAGATTACAGGCATTTGTGGGAGTTTTATCCGGCGGGGCCTGGTTTGAT
AAAGGCTTATTTGTCTACTGTTGCGTATGCGACTCCACAAGATCCCCTAT
TCCAAACGTCAGGGTTACAGCCGTTGGTCGTGTATTTTCATCTGTTGACC
ATGCGCAGTGCCCCTGCCCCTCCTCAGGTGGCGGGAGAATGATTGTAAGG
ACAAGAAACGAGAGAGAAATCAAAAAAGAATAAGCAAATTAGTAGCATG
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protein sequence of NO03G04120.1

>NO03G04120.1-protein ID=NO03G04120.1-protein|Name=NO03G04120.1|organism=Nannochloropsis oceanica|type=polypeptide|length=342bp
MTTMHCLARLDLLGLLLFVVCQVHHAFNPPSSPLLPLPASSRAKPMERRD
LLKDGLLLLGGVMGLGLPAAALIHPRSASAATGAAVPHTVDYTAFQKKLF
QKPPGLLTYPAWMEGEWQVSCKFIGADFPSSAAEASPFVPKGRIVSDTGL
PGFRRLSIAMVPDVGKDHAFRMRFVSKNGGRVEEDKIFNLKNALESELGK
AAVTTIEYNPDKNPNRASLNLLPGASPNAQRIELFWNARSVLPSPPGPDS
SSSTGSFRFLEDVRQVSLTPQLAETSTVGDYRHLWEFYPAGPGLIKAYLS
TVAYATPQDPLFQTSGLQPLVVYFHLLTMRSAPAPPQVAGE*
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mRNA from alignment at chr3:1196623..1197721-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO03G04120.1 ID=NO03G04120.1|Name=NO03G04120.1|organism=Nannochloropsis oceanica|type=mRNA|length=1099bp|location=Sequence derived from alignment at chr3:1196623..1197721- (Nannochloropsis oceanica)
ACACACAGAGAGAGTTATGACAACCATGCATTGTCTTGCTCGTCTTGATC TGCTTGGCTTGCTATTGTTTGTTGTTTGTCAAGTGCATCATGCATTCAAT CCCCCGTCATCGCCTCTACTACCACTTCCTGCCTCGTCACGGGCCAAGCC GATGGAGCGTCGCGACCTGCTGAAGGACGGTCTGCTGCTCCTCGGAGGAG TCATGGGTCTTGGCCTGCCTGCTGCTGCACTTATACACCCACGCTCCGCC TCAGCTGCCACCGGCGCCGCAGTGCCGCATACGGTCGATTACACAGCCTT TCAAAAGAAGCTTTTCCAAAAACCGCCGGGCCTGCTCACCTACCCCGCGT GGATGGAGGGGGAATGGCAGGTGTCTTGCAAATTCATTGGGGCTGACTTT CCGTCTTCTGCTGCCGAGGCCTCGCCCTTCGTGCCAAAAGGCCGCATTGT GTCCGACACGGGCTTGCCTGGGTTTCGTCGATTGAGCATTGCCATGGTCC CGGACGTGGGTAAAGACCACGCATTTCGCATGCGATTCGTGTCGAAGAAT GGAGGACGGGTGGAGGAAGACAAGATATTCAATCTCAAGAACGCTTTGGA GTCAGAGTTGGGTAAAGCAGCTGTCACTACCATTGAGTACAATCCTGACA AGAACCCAAACCGTGCCTCGCTTAACCTCTTGCCGGGTGCCAGTCCCAAT GCGCAGCGTATCGAACTCTTCTGGAATGCTCGCTCGGTCTTGCCATCACC ACCAGGGCCAGATAGCAGCAGTAGCACCGGCTCTTTTCGTTTCCTCGAAG ACGTACGACAGGTATCCTTGACGCCCCAGCTTGCCGAGACAAGCACGGTG GGAGATTACAGGCATTTGTGGGAGTTTTATCCGGCGGGGCCTGGTTTGAT AAAGGCTTATTTGTCTACTGTTGCGTATGCGACTCCACAAGATCCCCTAT TCCAAACGTCAGGGTTACAGCCGTTGGTCGTGTATTTTCATCTGTTGACC ATGCGCAGTGCCCCTGCCCCTCCTCAGGTGGCGGGAGAATGATTGTAAGG ACAAGAAACGAGAGAGAAATCAAAAAAGAATAAGCAAATTAGTAGCATG
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Coding sequence (CDS) from alignment at chr3:1196623..1197721-

>NO03G04120.1 ID=NO03G04120.1|Name=NO03G04120.1|organism=Nannochloropsis oceanica|type=CDS|length=1026bp|location=Sequence derived from alignment at chr3:1196623..1197721- (Nannochloropsis oceanica)
ATGACAACCATGCATTGTCTTGCTCGTCTTGATCTGCTTGGCTTGCTATT
GTTTGTTGTTTGTCAAGTGCATCATGCATTCAATCCCCCGTCATCGCCTC
TACTACCACTTCCTGCCTCGTCACGGGCCAAGCCGATGGAGCGTCGCGAC
CTGCTGAAGGACGGTCTGCTGCTCCTCGGAGGAGTCATGGGTCTTGGCCT
GCCTGCTGCTGCACTTATACACCCACGCTCCGCCTCAGCTGCCACCGGCG
CCGCAGTGCCGCATACGGTCGATTACACAGCCTTTCAAAAGAAGCTTTTC
CAAAAACCGCCGGGCCTGCTCACCTACCCCGCGTGGATGGAGGGGGAATG
GCAGGTGTCTTGCAAATTCATTGGGGCTGACTTTCCGTCTTCTGCTGCCG
AGGCCTCGCCCTTCGTGCCAAAAGGCCGCATTGTGTCCGACACGGGCTTG
CCTGGGTTTCGTCGATTGAGCATTGCCATGGTCCCGGACGTGGGTAAAGA
CCACGCATTTCGCATGCGATTCGTGTCGAAGAATGGAGGACGGGTGGAGG
AAGACAAGATATTCAATCTCAAGAACGCTTTGGAGTCAGAGTTGGGTAAA
GCAGCTGTCACTACCATTGAGTACAATCCTGACAAGAACCCAAACCGTGC
CTCGCTTAACCTCTTGCCGGGTGCCAGTCCCAATGCGCAGCGTATCGAAC
TCTTCTGGAATGCTCGCTCGGTCTTGCCATCACCACCAGGGCCAGATAGC
AGCAGTAGCACCGGCTCTTTTCGTTTCCTCGAAGACGTACGACAGGTATC
CTTGACGCCCCAGCTTGCCGAGACAAGCACGGTGGGAGATTACAGGCATT
TGTGGGAGTTTTATCCGGCGGGGCCTGGTTTGATAAAGGCTTATTTGTCT
ACTGTTGCGTATGCGACTCCACAAGATCCCCTATTCCAAACGTCAGGGTT
ACAGCCGTTGGTCGTGTATTTTCATCTGTTGACCATGCGCAGTGCCCCTG
CCCCTCCTCAGGTGGCGGGAGAATGA
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Synonyms
Publications