NO03G04070.2, NO03G04070.2 (mRNA) Nannochloropsis oceanica

Overview
NameNO03G04070.2
Unique NameNO03G04070.2
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2912
Alignment locationchr3:1182758..1185829 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:1182758..1185829 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO03G04070.2 vs.
Match: XP_005853436.1 (adenosine deaminase [Nannochloropsis gaditana CCMP526]; EKU22927.1 adenosine deaminase [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 428.3 bits (1100), Expect = 2.800e-116
Identity = 217/320 (67.81%), Postives = 242/320 (75.62%), Query Frame = 0 
Query:   37 FSPAKIQGLRTSAAASSSSSSINLDGDDNDDKDSLLRRINSNRKDGKAAVPTCRRCRAFKQLGPKLAEFLTEIPKTDLHVHLDGSPRLSTLIELAQTHGVELPAYTEEGLRTLVFHDAYDSLVDYLRGFPPIVRVMQQPGALERIAYEFAWDCINEGVRYIEPRFAPQLLATVEVDVIGVLKAAVQGLERAENEFNARTSVQDGSEPPFRFGIICCAMRVFMTDVSEYYRAFCALHKDEPPTLVYQLAASALVHAAIHAKKHLHLPIVGIDIAGQEAGFPAEAFQTAFEVAHKNFLGATVHAGEAFGPEVGRTLLQSMPC 357
            FSPA      +   A +       +  D++  D L RR+N            CRRCR FK +GP L  FLTEIPKTDLHVHLDGSPRLSTLIELAQ H V+LPAYTEEGLR LVF + YDSLVDYLRGFP IVRV+QQPGALERIAYEFAWDC+NEGV YIEPRFAPQLLAT  +DVIGVL  A +GLERA+ E+NA+ SV+DG +P F FGIICCAMR FMTDVSEYY AFC+LH+DEP  LVYQLAASAL HAAI AKK   LP+VG+DIAGQEAG+PA  FQ AFEVAHKNFLG TVHAGEAFGPE     +  + C
Sbjct:    7 FSPAP-----SRPCAFNGKKLATQENGDHNHVDDLPRRVNRVNDASSDLASACRRCRVFKGMGPNLVNFLTEIPKTDLHVHLDGSPRLSTLIELAQEHHVDLPAYTEEGLRELVFRETYDSLVDYLRGFPLIVRVLQQPGALERIAYEFAWDCLNEGVLYIEPRFAPQLLATATLDVIGVLTEATRGLERAKKEYNAQQSVRDGQKPSFDFGIICCAMRTFMTDVSEYYHAFCSLHQDEPQALVYQLAASALFHAAIKAKKDHGLPVVGVDIAGQEAGYPAAEFQAAFEVAHKNFLGVTVHAGEAFGPEAVFQAITDLHC 321
The following BLAST results are available for this feature:
BLAST of NO03G04070.2 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005853436.12.800e-11667.81adenosine deaminase [Nannochloropsis gaditana CCMP... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO03G04070NO03G04070Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO03G04070.2NO03G04070.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO03G04070.2.cds1NO03G04070.2.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO03G04070.2 ID=NO03G04070.2|Name=NO03G04070.2|organism=Nannochloropsis oceanica|type=mRNA|length=2912bp
AGTTTATCTCCCATTTCTTCTACATATTTATTTGCAATTTTATTTGCGCC
TGTCTCAATTCTCATCAAACGTTTGAGCACATGAGTCTACATAGCTTTTC
GTGCAACTCTGCCTGTGTCTTTGCCCGGGGATCGGCTGTCATTGCGCTTC
TAAGAGGTACTTAATCGTCACAGCAATCACAGAATCACGCGGATAGTTGA
AGGGGAGGTGTTCTGGAGCAGGGCGTGGCTTTAATCGTCGTAGACAGAGC
AGTCCTACCCGAATTGTCGTGGTTGAAAGCCGTGGGGCGGTCTTCTTCAA
TTGGCAGTAAACAGCAGTACCTTTGGCCCCACGAGGCCCGCTCTAGGGGA
CCATCCAAGCTCCAATTGCAGTGAATGCTACAGGTGGTGTGCAGGGCCTT
TCCACCGAATGTCATCTAGCAGAATGTAGCGGATAAGATCACACTATAAA
GGCCTGGCCGTGGCTTCAGGTAGGCGGGACGGGAGCCAGGCTCGGTGGTA
GTGAGGTGACGTCCGGAGGGGTCCTTACAAATCGATTGGAGGGGGAGGGA
AAGAATGCTGAAAGCGTGTGGAGCTTAAGATGAGGTGTTGAATTCGGTGT
TAACATTTTGTTTGTATGAATTCATGAAGGTTCTGAGACGCAGTGTTAGT
ATGACCAGACTCTGGTCACCAGAGGCAAGCGCGAATTTTGAGGCTCGAGA
TGGGGGGGTAAAAAGTGACTGTGCCCTGGCGGCTGCGTGTGTTCAGCAAC
AAAGTGTATGTGGGTTTTGCAAGAGTTGTGAGCTGTTTATAGCTACGGAG
ATGGGTACCGAACAGTCAGTCGCTCGAGCTTTCCTACTCACTCCCTCCTT
CCACACTGGCGTACAAAGGGGAAGACAGGCAAGCCCCTGGGACTCATCGG
ACGAGAACGTGGAAGAGCGCGAGCAGGGCGACAGCAGATTGATTTAGGGT
GGAGAATGAGCAGCAAACCCTCCTCCATGGTTGACTCAGCCGCCGTCGAC
CCACCCCTCAAGGCTCCCACACTTCCAGCCTCCACCAGTATCAGCAGCAC
CGCAGGCGCCACCTTCAGTCCTGCCAAAATTCAGGGGCTTCGAACCTCTG
CCGCCGCCAGCAGCAGCAGCAGCAGCATCAACTTAGACGGCGACGACAAC
GACGACAAGGACAGCTTGCTGCGGCGGATCAACAGTAATAGAAAGGATGG
CAAGGCCGCAGTACCCACGTGTCGACGCTGCCGCGCTTTCAAGCAGCTGG
GCCCGAAACTAGCGGAGTTTCTCACAGAGATACCCAAAACGGACTTACAC
GTACACCTGGACGGGTCGCCGCGCCTTAGCACGCTGATTGAGTTGGCCCA
GACACATGGGGTGGAACTGCCGGCATACACCGAAGAGGGCCTGCGGACCT
TAGTTTTTCATGATGCCTACGACAGCTTGGTAGACTACCTGCGTGGCTTT
CCGCCGATCGTCCGCGTCATGCAACAACCTGGGGCATTGGAACGGATCGC
CTACGAGTTTGCCTGGGATTGCATTAATGAAGGCGTGCGGTACATCGAGC
CAAGATTCGCTCCGCAGCTACTGGCGACGGTGGAGGTGGATGTCATAGGA
GTTTTGAAAGCAGCAGTACAGGGGTTGGAACGGGCTGAAAATGAGTTTAA
TGCCCGAACCTCCGTGCAAGATGGAAGCGAGCCTCCGTTTCGGTTTGGCA
TCATCTGCTGTGCAATGCGTGTCTTTATGACGGACGTTTCGGAGTATTAC
CGGGCTTTTTGCGCGTTGCACAAGGACGAACCCCCTACCCTTGTCTATCA
ACTCGCCGCTTCCGCACTCGTCCACGCCGCAATCCATGCCAAAAAGCACC
TCCACCTCCCTATAGTCGGTATTGACATTGCTGGCCAAGAAGCAGGATTT
CCAGCTGAAGCTTTTCAAACAGCTTTTGAAGTGGCACATAAAAATTTCTT
GGGGGCGACAGTACACGCTGGAGAGGCCTTCGGTCCAGAGGTAGGCCGGA
CATTGCTTCAATCAATGCCTTGCTGCTCGAATCTCTTCCCTCTCCCCTCC
CTCCCTTCCCCCCTCCCTCCTTCGAAAACAGGCCGTCTTCCAAGCCATCA
CGGACCTGCATTGCGAGAGACTAGGGCATGGATACCACCTGTTCAGCGTG
GACAAAGTGACAAAGAAGGAGAATCCAGCGGCGTTTGTGGAAGGCTTGGT
TCAGTATGTGGCCAAGAGAAGGATCATGCTCGAGGTGTGCTTGACCAGTA
ACCGGCAGACGATGGTGGAACTCCGCGACGACATTTCGAAGCACGCCTTG
AAGGACATGCTAGCCCACGGGATCTGCGTCTCCCTCTGCACCGACAACCG
TCTCATAAGCAACACTACCGTCGTAAAGGAACTCCTGTTGGCTATAGAGC
ATTTTGCGCTGACTCCCACTGAATTGAAGACCATCATTCTAGAAGGTTTC
AAGCGTAGTTTCTTCCCCGGCAAGTACCTAGAGAAGAGGGTCTATGTCTC
CCGCATGATCAACTACTACGAGCACATAGAGCGGAAGTACGGGTTGCATG
ATTGGTATTTGTCGGAAGAGAGTGTGCGTGAAGATAGACATAACCCTTGC
CAGCAGCAGCAAAAACAACGACAACAGCAGCAGCAAGGGGAAGAGCAGCA
GCAGCCATCGGCAGAGGGCTTGGGTGCCTTGGTGTGCGATATGCACGCGA
ATGGTGATCGATTGCAGACGTACAGTCCACAATGCAAAGGCCCTACGCAT
TTCTCACAGAAGGAGGATGGAATCCTAAAGAGGGATAAGCACGACCATAA
TCAGCACTTGGACATGCCACCCGAAGTGTTCATATGATGGAAGGAAACTA
GGAGGGTAATCAAATGACCGGATGATTGATTGACACGAGTAAATGAGGCA
AATCTGAGTGTA
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protein sequence of NO03G04070.2

>NO03G04070.2-protein ID=NO03G04070.2-protein|Name=NO03G04070.2|organism=Nannochloropsis oceanica|type=polypeptide|length=432bp
MSSKPSSMVDSAAVDPPLKAPTLPASTSISSTAGATFSPAKIQGLRTSAA
ASSSSSSINLDGDDNDDKDSLLRRINSNRKDGKAAVPTCRRCRAFKQLGP
KLAEFLTEIPKTDLHVHLDGSPRLSTLIELAQTHGVELPAYTEEGLRTLV
FHDAYDSLVDYLRGFPPIVRVMQQPGALERIAYEFAWDCINEGVRYIEPR
FAPQLLATVEVDVIGVLKAAVQGLERAENEFNARTSVQDGSEPPFRFGII
CCAMRVFMTDVSEYYRAFCALHKDEPPTLVYQLAASALVHAAIHAKKHLH
LPIVGIDIAGQEAGFPAEAFQTAFEVAHKNFLGATVHAGEAFGPEVGRTL
LQSMPCCSNLFPLPSLPSPLPPSKTGRLPSHHGPALRETRAWIPPVQRGQ
SDKEGESSGVCGRLGSVCGQEKDHARGVLDQ*
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mRNA from alignment at chr3:1182758..1185829-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO03G04070.2 ID=NO03G04070.2|Name=NO03G04070.2|organism=Nannochloropsis oceanica|type=mRNA|length=3072bp|location=Sequence derived from alignment at chr3:1182758..1185829- (Nannochloropsis oceanica)
AGTTTATCTCCCATTTCTTCTACATATTTATTTGCAATTTTATTTGCGCC
TGTCTCAATTCTCATCAAACGTTTGAGCACATGAGTCTACATAGCTTTTC
GTGCAACTCTGCCTGTGTCTTTGCCCGGGGATCGGCTGTCATTGCGCTTC
TAAGAGGTACTTAATCGTCACAGCAATCACAGAATCACGCGGATAGTTGA
AGGGGAGGTGTTCTGGAGCAGGGCGTGGCTTTAATCGTCGTAGACAGAGC
AGTCCTACCCGAATTGTCGTGGTTGAAAGCCGTGGGGCGGTCTTCTTCAA
TTGGCAGTAAACAGCAGTACCTTTGGCCCCACGAGGCCCGCTCTAGGGGA
CCATCCAAGCTCCAATTGCAGTGAATGCTACAGGTGGTGTGCAGGGCCTT
TCCACCGAATGTCATCTAGCAGAATGTAGCGGATAAGATCACACTATAAA
GGCCTGGCCGTGGCTTCAGGTAGGCGGGACGGGAGCCAGGCTCGGTGGTA
GTGAGGTGACGTCCGGAGGGGTCCTTACAAATCGATTGGAGGGGGAGGGA
AAGAATGCTGAAAGCGTGTGGAGCTTAAGATGAGGTGTTGAATTCGGTGT
TAACATTTTGTTTGTATGAATTCATGAAGGTTCTGAGACGCAGTGTTAGT
ATGACCAGACTCTGGTCACCAGAGGCAAGCGCGAATTTTGAGGCTCGAGA
TGGGGGGGTAAAAAGTGACTGTGCCCTGGCGGCTGCGTGTGTTCAGCAAC
AAAGTGTATGTGGGTTTTGCAAGAGTTGTGAGCTGTTTATAGCTACGGAG
ATGGGTACCGAACAGTCAGTCGCTCGAGCTTTCCTACTCACTCCCTCCTT
CCACACTGGCGTACAAAGGGGAAGACAGGCAAGCCCCTGGGACTCATCGG
ACGAGAACGTGGAAGAGCGCGAGCAGGGCGACAGCAGATTGATTTAGGGT
GGAGAATGAGCAGCAAACCCTCCTCCATGGTTGACTCAGCCGCCGTCGAC
CCACCCCTCAAGGCTCCCACACTTCCAGCCTCCACCAGTATCAGCAGCAC
CGCAGGCGCCACCTTCAGTCCTGCCAAAATTCAGGGGCTTCGAACCTCTG
CCGCCGCCAGCAGCAGCAGCAGCAGCATCAACTTAGACGGCGACGACAAC
GACGACAAGGACAGCTTGCTGCGGCGGATCAACAGTAATAGAAAGGATGG
CAAGGCCGCAGTACCCACGTGTCGACGCTGCCGCGCTTTCAAGCAGCTGG
GCCCGAAACTAGCGGAGTTTCTCACAGAGATACCCAAAACGGACTTACAC
GTACACCTGGACGGGTCGCCGCGCCTTAGCACGCTGATTGAGTTGGCCCA
GACACATGGGGTGGAACTGCCGGCATACACCGAAGAGGGCCTGCGGACCT
TAGTTTTTCATGATGCCTACGACAGCTTGGTAGACTACCTGCGTGGCTTT
CCGCCGATCGTCCGCGTCATGCAACAACCTGGGGCATTGGAACGGATCGC
CTACGAGTTTGCCTGGGATTGCATTAATGAAGGCGTGCGGTACATCGAGC
CAAGATTCGCTCCGCAGCTACTGGCGACGGTGGAGGTGGATGTCATAGGA
GTTTTGAAAGCAGCAGTACAGGGGTTGGAACGGGCTGAAAATGAGTTTAA
TGCCCGAACCTCCGTGCAAGATGGAAGCGAGCCTCCGTTTCGGTTTGGCA
TCATCTGCTGTGCAATGCGTGTCTTTATGACGGACGTTTCGGAGTATTAC
CGGGCTTTTTGCGCGTTGCACAAGGACGAACCCCCTACCCTTGTCTATCA
ACTCGCCGCTTCCGCACTCGTCCACGCCGCAATCCATGCCAAAAAGCACC
TCCACCTCCCTATAGTCGGTATTGACATTGCTGGCCAAGAAGCAGGATTT
CCAGCTGAAGCTTTTCAAACAGCTTTTGAAGTGGCACATAAAAATTTCTT
GGGGGCGACAGTACACGCTGGAGAGGCCTTCGGTCCAGAGGTAGGCCGGA
CATTGCTTCAATCAATGCCTTGCTGCTCGAATCTCTTCCCTCTCCCCTCC
CTCCCTTCCCCCCTCCCTCCTTCGAAAACAGGCCGTCTTCCAAGCCATCA
CGGACCTGCATTGCGAGAGACTAGGGCATGGATACCACCTGTTCAGCGTG
GACAAAGTGACAAAGAAGGAGAATCCAGCGGCGTTTGTGGAAGGCTTGGT
TCAGTATGTGGCCAAGAGAAGGATCATGCTCGAGGTGTGCTTGACCAGTA
ACCGGCAGACGATGTGAGTGGACTCGAAGGGGGCGGCGGGGAGGGAGGGA
CGGAGGGAAAAAAAGGGAGGGATGGAAATGGCGACTTAGTAGCTTGCACC
TAAACATTCCCAACGACTCTTTTTCTCCCTGACCTTCCTCCTTTCCACCC
CTTCCTCCCTTCCCCCCTCCAAGGGTGGAACTCCGCGACGACATTTCGAA
GCACGCCTTGAAGGACATGCTAGCCCACGGGATCTGCGTCTCCCTCTGCA
CCGACAACCGTCTCATAAGCAACACTACCGTCGTAAAGGAACTCCTGTTG
GCTATAGAGCATTTTGCGCTGACTCCCACTGAATTGAAGACCATCATTCT
AGAAGGTTTCAAGCGTAGTTTCTTCCCCGGCAAGTACCTAGAGAAGAGGG
TCTATGTCTCCCGCATGATCAACTACTACGAGCACATAGAGCGGAAGTAC
GGGTTGCATGATTGGTATTTGTCGGAAGAGAGTGTGCGTGAAGATAGACA
TAACCCTTGCCAGCAGCAGCAAAAACAACGACAACAGCAGCAGCAAGGGG
AAGAGCAGCAGCAGCCATCGGCAGAGGGCTTGGGTGCCTTGGTGTGCGAT
ATGCACGCGAATGGTGATCGATTGCAGACGTACAGTCCACAATGCAAAGG
CCCTACGCATTTCTCACAGAAGGAGGATGGAATCCTAAAGAGGGATAAGC
ACGACCATAATCAGCACTTGGACATGCCACCCGAAGTGTTCATATGATGG
AAGGAAACTAGGAGGGTAATCAAATGACCGGATGATTGATTGACACGAGT
AAATGAGGCAAATCTGAGTGTA
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Coding sequence (CDS) from alignment at chr3:1182758..1185829-

>NO03G04070.2 ID=NO03G04070.2|Name=NO03G04070.2|organism=Nannochloropsis oceanica|type=CDS|length=1296bp|location=Sequence derived from alignment at chr3:1182758..1185829- (Nannochloropsis oceanica)
ATGAGCAGCAAACCCTCCTCCATGGTTGACTCAGCCGCCGTCGACCCACC
CCTCAAGGCTCCCACACTTCCAGCCTCCACCAGTATCAGCAGCACCGCAG
GCGCCACCTTCAGTCCTGCCAAAATTCAGGGGCTTCGAACCTCTGCCGCC
GCCAGCAGCAGCAGCAGCAGCATCAACTTAGACGGCGACGACAACGACGA
CAAGGACAGCTTGCTGCGGCGGATCAACAGTAATAGAAAGGATGGCAAGG
CCGCAGTACCCACGTGTCGACGCTGCCGCGCTTTCAAGCAGCTGGGCCCG
AAACTAGCGGAGTTTCTCACAGAGATACCCAAAACGGACTTACACGTACA
CCTGGACGGGTCGCCGCGCCTTAGCACGCTGATTGAGTTGGCCCAGACAC
ATGGGGTGGAACTGCCGGCATACACCGAAGAGGGCCTGCGGACCTTAGTT
TTTCATGATGCCTACGACAGCTTGGTAGACTACCTGCGTGGCTTTCCGCC
GATCGTCCGCGTCATGCAACAACCTGGGGCATTGGAACGGATCGCCTACG
AGTTTGCCTGGGATTGCATTAATGAAGGCGTGCGGTACATCGAGCCAAGA
TTCGCTCCGCAGCTACTGGCGACGGTGGAGGTGGATGTCATAGGAGTTTT
GAAAGCAGCAGTACAGGGGTTGGAACGGGCTGAAAATGAGTTTAATGCCC
GAACCTCCGTGCAAGATGGAAGCGAGCCTCCGTTTCGGTTTGGCATCATC
TGCTGTGCAATGCGTGTCTTTATGACGGACGTTTCGGAGTATTACCGGGC
TTTTTGCGCGTTGCACAAGGACGAACCCCCTACCCTTGTCTATCAACTCG
CCGCTTCCGCACTCGTCCACGCCGCAATCCATGCCAAAAAGCACCTCCAC
CTCCCTATAGTCGGTATTGACATTGCTGGCCAAGAAGCAGGATTTCCAGC
TGAAGCTTTTCAAACAGCTTTTGAAGTGGCACATAAAAATTTCTTGGGGG
CGACAGTACACGCTGGAGAGGCCTTCGGTCCAGAGGTAGGCCGGACATTG
CTTCAATCAATGCCTTGCTGCTCGAATCTCTTCCCTCTCCCCTCCCTCCC
TTCCCCCCTCCCTCCTTCGAAAACAGGCCGTCTTCCAAGCCATCACGGAC
CTGCATTGCGAGAGACTAGGGCATGGATACCACCTGTTCAGCGTGGACAA
AGTGACAAAGAAGGAGAATCCAGCGGCGTTTGTGGAAGGCTTGGTTCAGT
ATGTGGCCAAGAGAAGGATCATGCTCGAGGTGTGCTTGACCAGTAA
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Synonyms
Publications