NO03G04020.1, NO03G04020.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO03G04020.1
Unique NameNO03G04020.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1862
Alignment locationchr3:1171863..1173806 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:1171863..1173806 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO03G04020.1 vs.
Match: XP_005780836.1 (hypothetical protein EMIHUDRAFT_204268 [Emiliania huxleyi CCMP1516]; EOD28407.1 hypothetical protein EMIHUDRAFT_204268 [Emiliania huxleyi CCMP1516])

HSP 1 Score: 101.3 bits (251), Expect = 7.400e-18
Identity = 66/148 (44.59%), Postives = 83/148 (56.08%), Query Frame = 0
Query:  229 SHGGSLLHVAAGSTAAFAGAGSPREEMCTLLLDAGADVNALSDNGATPLHWAAGSGCADLVALLLRRGADAHLCTSTWGKQVFGKDSGQTPSHWAAASGHADVLKVLGKWAPLSLGEKDERGRTPTALAAREGKWECEMILDAMTEEE 377
            S G  +    A   AA AGA S  E    LLL  GA V A + NG+T LHWAA SG A +V  LL  GA     TSTW   V G+D+GQT +HWAA++GH + L  L +  P +L  +DER  TP+ LAA+EG       LD +  E+
Sbjct:   43 SEGSGMALADALHLAAAAGAESAVE----LLLARGAPVRATAANGSTALHWAALSGHAGVVKALLHAGAPTDARTSTWCATVRGEDTGQTAAHWAASAGHGESLAALLEAGPHALMMRDERQLTPSGLAAKEGYTGLVRRLDELEGEQ 186          
The following BLAST results are available for this feature:
BLAST of NO03G04020.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005780836.17.400e-1844.59hypothetical protein EMIHUDRAFT_204268 [Emiliania ... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO03G04020NO03G04020Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO03G04020.1NO03G04020.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO03G04020.1.cds1NO03G04020.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO03G04020.1.cds2NO03G04020.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO03G04020.1 ID=NO03G04020.1|Name=NO03G04020.1|organism=Nannochloropsis oceanica|type=mRNA|length=1862bp
ACACATCGGCAGCCTCTCTGTCTGCATGTAAATAATGAAGGGTTTGTCAG
TGAGTTCGCATCCAATTGCGTGGTGCAAGATGAAGGTCTCTGAGGCATCA
CGAAGTCAATGGGCCTTGCGACACGAGGACATACGAAAGCACGACAACCT
CAATATGACCACGTGCAAGACCTCGTGTTACGCTTTAGTTTACACAAGCC
CCGGCACATTATTTGCAGACTGCTGAGTGCAGGCGAACTGATGGATAAGT
GGGCAGCGGATGCGGCATGATGAAGATGAAGAATGGGGGGGGGTTAACAA
CAAACTGTCTCCAAGCCAGCCGACACACTCCATGTTGTCCCATCCTCCCG
GCTAATTAAAGCGAGTTAGATGGCATATATTGGCGCTTTTTTTAGCACCA
TGGTGTGGCAGGCAGGGTCTTTCACTCTCTTCCGTGGGCCGTCTTTTTTC
AAGCCTTTCCTTCTTCTTCCTGTCTTCTCTTCACTCCCCTCTATGGTGCT
ATTGATTTCCCGCCATGCATGCATGACTTCTAGAATATTTACTAACGAAT
CTTTTTACGCGCTCTTATCTCTACGGCGCATTCAACAGCCACCCTGAATG
TATGTCCGTCCGGCTGGGCGCCCTTCGGGTACTTCGGCTCAAAGTTCTGC
AGCGCTTCAACCCAAGCATACCTTCGTCTTCTACCCTTGTACCCCTCAAA
AGCCGCGTGTTGGCCTCGTACGAGCAGTTGGAAGGGACGCAGCTCAAGGG
GCGTTCTGTTTATTTGGTCCGAAAATCTTTAGTTGAAGACATTCTGAAGG
GTGCTGATGCCAATAAGGCCACAACTTCGCATCGTAGTGACAAGGAAAAT
CAAATTGTGGTTTCCATAGGAGGCAATAATGATAAAGACCATCAGAAAGG
AGGACTGCTTTCTGCAACGTCTTCCTCCCTCCCCTCCATGCCCCAAGCTC
GGGACCAACTGGCTCTCCTTCGCACTCCAGGCTTCTCCATTATACTAGCC
GACCTTTTGGCGACCAAACAACGTAATTTCGACAATGATGTGAGCACCTG
CCCGCCTCTCCCGATTGCTGCCTTGTCTCACACCTTGACGGGCCTAGCTG
TCGCCGATTCTCCAACCCCTGAGCTCTCTCCTCAAGCGCTTGAGGCATTT
GACGCCGTCCAACATGGAGATATTTTTCGGCTTCGTGCCTTGCTCTCCTC
CACCTCCACCTCCACCTCCTCCTCCTCCTCCTCCTCCTCAATAGCAACGC
CAAATGGTGCCATTTTAGTGCGTGCCCGCCACCCGAGCCATGGGGGGTCC
CTTCTCCATGTCGCTGCCGGTTCGACCGCTGCATTCGCAGGAGCAGGCTC
ACCAAGAGAAGAAATGTGTACCCTCCTCCTTGATGCCGGTGCGGATGTCA
ACGCCTTGAGTGATAACGGCGCCACCCCCCTCCATTGGGCTGCGGGCTCG
GGTTGCGCTGACCTGGTCGCCCTCCTCCTCCGCCGAGGAGCAGATGCGCA
CTTGTGTACCTCTACATGGGGAAAACAAGTTTTTGGGAAGGACAGTGGTC
AGACGCCGAGTCATTGGGCGGCGGCAAGTGGACATGCTGATGTGTTGAAG
GTTCTAGGTAAGTGGGCCCCACTGTCGCTGGGGGAAAAGGACGAGAGGGG
CAGGACACCGACAGCCTTGGCGGCAAGGGAGGGGAAGTGGGAGTGTGAGA
TGATTCTGGATGCGATGACGGAGGAGGAATATGTGTGGGTAGAGGTGTTG
CAGGAAGGGCACGCTGTGCGCGTGATGAGGGAGGAAGGAGGAGGACGAGG
ACGAGGAGGGAGGAGAAAAACGGTGTAGCCCAACGCCTAAAGAAGAAGTG
TAAACGTACCAT
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protein sequence of NO03G04020.1

>NO03G04020.1-protein ID=NO03G04020.1-protein|Name=NO03G04020.1|organism=Nannochloropsis oceanica|type=polypeptide|length=409bp
MSVRLGALRVLRLKVLQRFNPSIPSSSTLVPLKSRVLASYEQLEGTQLKG
RSVYLVRKSLVEDILKGADANKATTSHRSDKENQIVVSIGGNNDKDHQKG
GLLSATSSSLPSMPQARDQLALLRTPGFSIILADLLATKQRNFDNDVSTC
PPLPIAALSHTLTGLAVADSPTPELSPQALEAFDAVQHGDIFRLRALLSS
TSTSTSSSSSSSSIATPNGAILVRARHPSHGGSLLHVAAGSTAAFAGAGS
PREEMCTLLLDAGADVNALSDNGATPLHWAAGSGCADLVALLLRRGADAH
LCTSTWGKQVFGKDSGQTPSHWAAASGHADVLKVLGKWAPLSLGEKDERG
RTPTALAAREGKWECEMILDAMTEEEYVWVEVLQEGHAVRVMREEGGGRG
RGGRRKTV*
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mRNA from alignment at chr3:1171863..1173806+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO03G04020.1 ID=NO03G04020.1|Name=NO03G04020.1|organism=Nannochloropsis oceanica|type=mRNA|length=1944bp|location=Sequence derived from alignment at chr3:1171863..1173806+ (Nannochloropsis oceanica)
ACACATCGGCAGCCTCTCTGTCTGCATGTAAATAATGAAGGGTTTGTCAG TGAGTTCGCATCCAATTGCGTGGTGCAAGATGAAGGTCTCTGAGGCATCA CGAAGTCAATGGGCCTTGCGACACGAGGACATACGAAAGCACGACAACCT CAATATGACCACGTGCAAGACCTCGTGTTACGCTTTAGTTTACACAAGCC CCGGCACATTATTTGCAGACTGCTGAGTGCAGGCGAACTGATGGATAAGT GGGCAGCGGATGCGGCATGATGAAGATGAAGAATGGGGGGGGGTTAACAA CAAACTGTCTCCAAGCCAGCCGACACACTCCATGTTGTCCCATCCTCCCG GCTAATTAAAGCGAGTTAGATGGCATATATTGGCGCTTTTTTTAGCACCA TGGTGTGGCAGGCAGGGTCTTTCACTCTCTTCCGTGGGCCGTCTTTTTTC AAGCCTTTCCTTCTTCTTCCTGTCTTCTCTTCACTCCCCTCTATGGTGCT ATTGATTTCCCGCCATGCATGCATGACTTCTAGAATATTTACTAACGAAT CTTTTTACGCGCTCTTATCTCTACGGCGCATTCAACAGCCACCCTGAATG TATGTCCGTCCGGCTGGGCGCCCTTCGGGTACTTCGGCTCAAAGTTCTGC AGCGCTTCAACCCAAGGTGAGAACTTTCCACCGTTCCCCTCACATTTTAC ATATCAAATCTCCTTATATCTGCGCACATCCAATCACAACAATGGAAGCA TACCTTCGTCTTCTACCCTTGTACCCCTCAAAAGCCGCGTGTTGGCCTCG TACGAGCAGTTGGAAGGGACGCAGCTCAAGGGGCGTTCTGTTTATTTGGT CCGAAAATCTTTAGTTGAAGACATTCTGAAGGGTGCTGATGCCAATAAGG CCACAACTTCGCATCGTAGTGACAAGGAAAATCAAATTGTGGTTTCCATA GGAGGCAATAATGATAAAGACCATCAGAAAGGAGGACTGCTTTCTGCAAC GTCTTCCTCCCTCCCCTCCATGCCCCAAGCTCGGGACCAACTGGCTCTCC TTCGCACTCCAGGCTTCTCCATTATACTAGCCGACCTTTTGGCGACCAAA CAACGTAATTTCGACAATGATGTGAGCACCTGCCCGCCTCTCCCGATTGC TGCCTTGTCTCACACCTTGACGGGCCTAGCTGTCGCCGATTCTCCAACCC CTGAGCTCTCTCCTCAAGCGCTTGAGGCATTTGACGCCGTCCAACATGGA GATATTTTTCGGCTTCGTGCCTTGCTCTCCTCCACCTCCACCTCCACCTC CTCCTCCTCCTCCTCCTCCTCAATAGCAACGCCAAATGGTGCCATTTTAG TGCGTGCCCGCCACCCGAGCCATGGGGGGTCCCTTCTCCATGTCGCTGCC GGTTCGACCGCTGCATTCGCAGGAGCAGGCTCACCAAGAGAAGAAATGTG TACCCTCCTCCTTGATGCCGGTGCGGATGTCAACGCCTTGAGTGATAACG GCGCCACCCCCCTCCATTGGGCTGCGGGCTCGGGTTGCGCTGACCTGGTC GCCCTCCTCCTCCGCCGAGGAGCAGATGCGCACTTGTGTACCTCTACATG GGGAAAACAAGTTTTTGGGAAGGACAGTGGTCAGACGCCGAGTCATTGGG CGGCGGCAAGTGGACATGCTGATGTGTTGAAGGTTCTAGGTAAGTGGGCC CCACTGTCGCTGGGGGAAAAGGACGAGAGGGGCAGGACACCGACAGCCTT GGCGGCAAGGGAGGGGAAGTGGGAGTGTGAGATGATTCTGGATGCGATGA CGGAGGAGGAATATGTGTGGGTAGAGGTGTTGCAGGAAGGGCACGCTGTG CGCGTGATGAGGGAGGAAGGAGGAGGACGAGGACGAGGAGGGAGGAGAAA AACGGTGTAGCCCAACGCCTAAAGAAGAAGTGTAAACGTACCAT
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Coding sequence (CDS) from alignment at chr3:1171863..1173806+

>NO03G04020.1 ID=NO03G04020.1|Name=NO03G04020.1|organism=Nannochloropsis oceanica|type=CDS|length=1227bp|location=Sequence derived from alignment at chr3:1171863..1173806+ (Nannochloropsis oceanica)
ATGTCCGTCCGGCTGGGCGCCCTTCGGGTACTTCGGCTCAAAGTTCTGCA
GCGCTTCAACCCAAGCATACCTTCGTCTTCTACCCTTGTACCCCTCAAAA
GCCGCGTGTTGGCCTCGTACGAGCAGTTGGAAGGGACGCAGCTCAAGGGG
CGTTCTGTTTATTTGGTCCGAAAATCTTTAGTTGAAGACATTCTGAAGGG
TGCTGATGCCAATAAGGCCACAACTTCGCATCGTAGTGACAAGGAAAATC
AAATTGTGGTTTCCATAGGAGGCAATAATGATAAAGACCATCAGAAAGGA
GGACTGCTTTCTGCAACGTCTTCCTCCCTCCCCTCCATGCCCCAAGCTCG
GGACCAACTGGCTCTCCTTCGCACTCCAGGCTTCTCCATTATACTAGCCG
ACCTTTTGGCGACCAAACAACGTAATTTCGACAATGATGTGAGCACCTGC
CCGCCTCTCCCGATTGCTGCCTTGTCTCACACCTTGACGGGCCTAGCTGT
CGCCGATTCTCCAACCCCTGAGCTCTCTCCTCAAGCGCTTGAGGCATTTG
ACGCCGTCCAACATGGAGATATTTTTCGGCTTCGTGCCTTGCTCTCCTCC
ACCTCCACCTCCACCTCCTCCTCCTCCTCCTCCTCCTCAATAGCAACGCC
AAATGGTGCCATTTTAGTGCGTGCCCGCCACCCGAGCCATGGGGGGTCCC
TTCTCCATGTCGCTGCCGGTTCGACCGCTGCATTCGCAGGAGCAGGCTCA
CCAAGAGAAGAAATGTGTACCCTCCTCCTTGATGCCGGTGCGGATGTCAA
CGCCTTGAGTGATAACGGCGCCACCCCCCTCCATTGGGCTGCGGGCTCGG
GTTGCGCTGACCTGGTCGCCCTCCTCCTCCGCCGAGGAGCAGATGCGCAC
TTGTGTACCTCTACATGGGGAAAACAAGTTTTTGGGAAGGACAGTGGTCA
GACGCCGAGTCATTGGGCGGCGGCAAGTGGACATGCTGATGTGTTGAAGG
TTCTAGGTAAGTGGGCCCCACTGTCGCTGGGGGAAAAGGACGAGAGGGGC
AGGACACCGACAGCCTTGGCGGCAAGGGAGGGGAAGTGGGAGTGTGAGAT
GATTCTGGATGCGATGACGGAGGAGGAATATGTGTGGGTAGAGGTGTTGC
AGGAAGGGCACGCTGTGCGCGTGATGAGGGAGGAAGGAGGAGGACGAGGA
CGAGGAGGGAGGAGAAAAACGGTGTAG
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Synonyms
Publications