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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr3 | genome | chr3:1171863..1173806 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO03G04020.1 vs.
Match: XP_005780836.1 (hypothetical protein EMIHUDRAFT_204268 [Emiliania huxleyi CCMP1516]; EOD28407.1 hypothetical protein EMIHUDRAFT_204268 [Emiliania huxleyi CCMP1516]) HSP 1 Score: 101.3 bits (251), Expect = 7.400e-18 Identity = 66/148 (44.59%), Postives = 83/148 (56.08%), Query Frame = 0
Query: 229 SHGGSLLHVAAGSTAAFAGAGSPREEMCTLLLDAGADVNALSDNGATPLHWAAGSGCADLVALLLRRGADAHLCTSTWGKQVFGKDSGQTPSHWAAASGHADVLKVLGKWAPLSLGEKDERGRTPTALAAREGKWECEMILDAMTEEE 377
S G + A AA AGA S E LLL GA V A + NG+T LHWAA SG A +V LL GA TSTW V G+D+GQT +HWAA++GH + L L + P +L +DER TP+ LAA+EG LD + E+
Sbjct: 43 SEGSGMALADALHLAAAAGAESAVE----LLLARGAPVRATAANGSTALHWAALSGHAGVVKALLHAGAPTDARTSTWCATVRGEDTGQTAAHWAASAGHGESLAALLEAGPHALMMRDERQLTPSGLAAKEGYTGLVRRLDELEGEQ 186
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO03G04020.1 ID=NO03G04020.1|Name=NO03G04020.1|organism=Nannochloropsis oceanica|type=mRNA|length=1862bp ACACATCGGCAGCCTCTCTGTCTGCATGTAAATAATGAAGGGTTTGTCAG TGAGTTCGCATCCAATTGCGTGGTGCAAGATGAAGGTCTCTGAGGCATCA CGAAGTCAATGGGCCTTGCGACACGAGGACATACGAAAGCACGACAACCT CAATATGACCACGTGCAAGACCTCGTGTTACGCTTTAGTTTACACAAGCC CCGGCACATTATTTGCAGACTGCTGAGTGCAGGCGAACTGATGGATAAGT GGGCAGCGGATGCGGCATGATGAAGATGAAGAATGGGGGGGGGTTAACAA CAAACTGTCTCCAAGCCAGCCGACACACTCCATGTTGTCCCATCCTCCCG GCTAATTAAAGCGAGTTAGATGGCATATATTGGCGCTTTTTTTAGCACCA TGGTGTGGCAGGCAGGGTCTTTCACTCTCTTCCGTGGGCCGTCTTTTTTC AAGCCTTTCCTTCTTCTTCCTGTCTTCTCTTCACTCCCCTCTATGGTGCT ATTGATTTCCCGCCATGCATGCATGACTTCTAGAATATTTACTAACGAAT CTTTTTACGCGCTCTTATCTCTACGGCGCATTCAACAGCCACCCTGAATG TATGTCCGTCCGGCTGGGCGCCCTTCGGGTACTTCGGCTCAAAGTTCTGC AGCGCTTCAACCCAAGCATACCTTCGTCTTCTACCCTTGTACCCCTCAAA AGCCGCGTGTTGGCCTCGTACGAGCAGTTGGAAGGGACGCAGCTCAAGGG GCGTTCTGTTTATTTGGTCCGAAAATCTTTAGTTGAAGACATTCTGAAGG GTGCTGATGCCAATAAGGCCACAACTTCGCATCGTAGTGACAAGGAAAAT CAAATTGTGGTTTCCATAGGAGGCAATAATGATAAAGACCATCAGAAAGG AGGACTGCTTTCTGCAACGTCTTCCTCCCTCCCCTCCATGCCCCAAGCTC GGGACCAACTGGCTCTCCTTCGCACTCCAGGCTTCTCCATTATACTAGCC GACCTTTTGGCGACCAAACAACGTAATTTCGACAATGATGTGAGCACCTG CCCGCCTCTCCCGATTGCTGCCTTGTCTCACACCTTGACGGGCCTAGCTG TCGCCGATTCTCCAACCCCTGAGCTCTCTCCTCAAGCGCTTGAGGCATTT GACGCCGTCCAACATGGAGATATTTTTCGGCTTCGTGCCTTGCTCTCCTC CACCTCCACCTCCACCTCCTCCTCCTCCTCCTCCTCCTCAATAGCAACGC CAAATGGTGCCATTTTAGTGCGTGCCCGCCACCCGAGCCATGGGGGGTCC CTTCTCCATGTCGCTGCCGGTTCGACCGCTGCATTCGCAGGAGCAGGCTC ACCAAGAGAAGAAATGTGTACCCTCCTCCTTGATGCCGGTGCGGATGTCA ACGCCTTGAGTGATAACGGCGCCACCCCCCTCCATTGGGCTGCGGGCTCG GGTTGCGCTGACCTGGTCGCCCTCCTCCTCCGCCGAGGAGCAGATGCGCA CTTGTGTACCTCTACATGGGGAAAACAAGTTTTTGGGAAGGACAGTGGTC AGACGCCGAGTCATTGGGCGGCGGCAAGTGGACATGCTGATGTGTTGAAG GTTCTAGGTAAGTGGGCCCCACTGTCGCTGGGGGAAAAGGACGAGAGGGG CAGGACACCGACAGCCTTGGCGGCAAGGGAGGGGAAGTGGGAGTGTGAGA TGATTCTGGATGCGATGACGGAGGAGGAATATGTGTGGGTAGAGGTGTTG CAGGAAGGGCACGCTGTGCGCGTGATGAGGGAGGAAGGAGGAGGACGAGG ACGAGGAGGGAGGAGAAAAACGGTGTAGCCCAACGCCTAAAGAAGAAGTG TAAACGTACCAT back to topprotein sequence of NO03G04020.1 >NO03G04020.1-protein ID=NO03G04020.1-protein|Name=NO03G04020.1|organism=Nannochloropsis oceanica|type=polypeptide|length=409bp MSVRLGALRVLRLKVLQRFNPSIPSSSTLVPLKSRVLASYEQLEGTQLKG RSVYLVRKSLVEDILKGADANKATTSHRSDKENQIVVSIGGNNDKDHQKG GLLSATSSSLPSMPQARDQLALLRTPGFSIILADLLATKQRNFDNDVSTC PPLPIAALSHTLTGLAVADSPTPELSPQALEAFDAVQHGDIFRLRALLSS TSTSTSSSSSSSSIATPNGAILVRARHPSHGGSLLHVAAGSTAAFAGAGS PREEMCTLLLDAGADVNALSDNGATPLHWAAGSGCADLVALLLRRGADAH LCTSTWGKQVFGKDSGQTPSHWAAASGHADVLKVLGKWAPLSLGEKDERG RTPTALAAREGKWECEMILDAMTEEEYVWVEVLQEGHAVRVMREEGGGRG RGGRRKTV* back to topmRNA from alignment at chr3:1171863..1173806+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO03G04020.1 ID=NO03G04020.1|Name=NO03G04020.1|organism=Nannochloropsis oceanica|type=mRNA|length=1944bp|location=Sequence derived from alignment at chr3:1171863..1173806+ (Nannochloropsis oceanica) ACACATCGGCAGCCTCTCTGTCTGCATGTAAATAATGAAGGGTTTGTCAG
TGAGTTCGCATCCAATTGCGTGGTGCAAGATGAAGGTCTCTGAGGCATCA
CGAAGTCAATGGGCCTTGCGACACGAGGACATACGAAAGCACGACAACCT
CAATATGACCACGTGCAAGACCTCGTGTTACGCTTTAGTTTACACAAGCC
CCGGCACATTATTTGCAGACTGCTGAGTGCAGGCGAACTGATGGATAAGT
GGGCAGCGGATGCGGCATGATGAAGATGAAGAATGGGGGGGGGTTAACAA
CAAACTGTCTCCAAGCCAGCCGACACACTCCATGTTGTCCCATCCTCCCG
GCTAATTAAAGCGAGTTAGATGGCATATATTGGCGCTTTTTTTAGCACCA
TGGTGTGGCAGGCAGGGTCTTTCACTCTCTTCCGTGGGCCGTCTTTTTTC
AAGCCTTTCCTTCTTCTTCCTGTCTTCTCTTCACTCCCCTCTATGGTGCT
ATTGATTTCCCGCCATGCATGCATGACTTCTAGAATATTTACTAACGAAT
CTTTTTACGCGCTCTTATCTCTACGGCGCATTCAACAGCCACCCTGAATG
TATGTCCGTCCGGCTGGGCGCCCTTCGGGTACTTCGGCTCAAAGTTCTGC
AGCGCTTCAACCCAAGGTGAGAACTTTCCACCGTTCCCCTCACATTTTAC
ATATCAAATCTCCTTATATCTGCGCACATCCAATCACAACAATGGAAGCA
TACCTTCGTCTTCTACCCTTGTACCCCTCAAAAGCCGCGTGTTGGCCTCG
TACGAGCAGTTGGAAGGGACGCAGCTCAAGGGGCGTTCTGTTTATTTGGT
CCGAAAATCTTTAGTTGAAGACATTCTGAAGGGTGCTGATGCCAATAAGG
CCACAACTTCGCATCGTAGTGACAAGGAAAATCAAATTGTGGTTTCCATA
GGAGGCAATAATGATAAAGACCATCAGAAAGGAGGACTGCTTTCTGCAAC
GTCTTCCTCCCTCCCCTCCATGCCCCAAGCTCGGGACCAACTGGCTCTCC
TTCGCACTCCAGGCTTCTCCATTATACTAGCCGACCTTTTGGCGACCAAA
CAACGTAATTTCGACAATGATGTGAGCACCTGCCCGCCTCTCCCGATTGC
TGCCTTGTCTCACACCTTGACGGGCCTAGCTGTCGCCGATTCTCCAACCC
CTGAGCTCTCTCCTCAAGCGCTTGAGGCATTTGACGCCGTCCAACATGGA
GATATTTTTCGGCTTCGTGCCTTGCTCTCCTCCACCTCCACCTCCACCTC
CTCCTCCTCCTCCTCCTCCTCAATAGCAACGCCAAATGGTGCCATTTTAG
TGCGTGCCCGCCACCCGAGCCATGGGGGGTCCCTTCTCCATGTCGCTGCC
GGTTCGACCGCTGCATTCGCAGGAGCAGGCTCACCAAGAGAAGAAATGTG
TACCCTCCTCCTTGATGCCGGTGCGGATGTCAACGCCTTGAGTGATAACG
GCGCCACCCCCCTCCATTGGGCTGCGGGCTCGGGTTGCGCTGACCTGGTC
GCCCTCCTCCTCCGCCGAGGAGCAGATGCGCACTTGTGTACCTCTACATG
GGGAAAACAAGTTTTTGGGAAGGACAGTGGTCAGACGCCGAGTCATTGGG
CGGCGGCAAGTGGACATGCTGATGTGTTGAAGGTTCTAGGTAAGTGGGCC
CCACTGTCGCTGGGGGAAAAGGACGAGAGGGGCAGGACACCGACAGCCTT
GGCGGCAAGGGAGGGGAAGTGGGAGTGTGAGATGATTCTGGATGCGATGA
CGGAGGAGGAATATGTGTGGGTAGAGGTGTTGCAGGAAGGGCACGCTGTG
CGCGTGATGAGGGAGGAAGGAGGAGGACGAGGACGAGGAGGGAGGAGAAA
AACGGTGTAGCCCAACGCCTAAAGAAGAAGTGTAAACGTACCAT back to topCoding sequence (CDS) from alignment at chr3:1171863..1173806+ >NO03G04020.1 ID=NO03G04020.1|Name=NO03G04020.1|organism=Nannochloropsis oceanica|type=CDS|length=1227bp|location=Sequence derived from alignment at chr3:1171863..1173806+ (Nannochloropsis oceanica) ATGTCCGTCCGGCTGGGCGCCCTTCGGGTACTTCGGCTCAAAGTTCTGCA GCGCTTCAACCCAAGCATACCTTCGTCTTCTACCCTTGTACCCCTCAAAA GCCGCGTGTTGGCCTCGTACGAGCAGTTGGAAGGGACGCAGCTCAAGGGG CGTTCTGTTTATTTGGTCCGAAAATCTTTAGTTGAAGACATTCTGAAGGG TGCTGATGCCAATAAGGCCACAACTTCGCATCGTAGTGACAAGGAAAATC AAATTGTGGTTTCCATAGGAGGCAATAATGATAAAGACCATCAGAAAGGA GGACTGCTTTCTGCAACGTCTTCCTCCCTCCCCTCCATGCCCCAAGCTCG GGACCAACTGGCTCTCCTTCGCACTCCAGGCTTCTCCATTATACTAGCCG ACCTTTTGGCGACCAAACAACGTAATTTCGACAATGATGTGAGCACCTGC CCGCCTCTCCCGATTGCTGCCTTGTCTCACACCTTGACGGGCCTAGCTGT CGCCGATTCTCCAACCCCTGAGCTCTCTCCTCAAGCGCTTGAGGCATTTG ACGCCGTCCAACATGGAGATATTTTTCGGCTTCGTGCCTTGCTCTCCTCC ACCTCCACCTCCACCTCCTCCTCCTCCTCCTCCTCCTCAATAGCAACGCC AAATGGTGCCATTTTAGTGCGTGCCCGCCACCCGAGCCATGGGGGGTCCC TTCTCCATGTCGCTGCCGGTTCGACCGCTGCATTCGCAGGAGCAGGCTCA CCAAGAGAAGAAATGTGTACCCTCCTCCTTGATGCCGGTGCGGATGTCAA CGCCTTGAGTGATAACGGCGCCACCCCCCTCCATTGGGCTGCGGGCTCGG GTTGCGCTGACCTGGTCGCCCTCCTCCTCCGCCGAGGAGCAGATGCGCAC TTGTGTACCTCTACATGGGGAAAACAAGTTTTTGGGAAGGACAGTGGTCA GACGCCGAGTCATTGGGCGGCGGCAAGTGGACATGCTGATGTGTTGAAGG TTCTAGGTAAGTGGGCCCCACTGTCGCTGGGGGAAAAGGACGAGAGGGGC AGGACACCGACAGCCTTGGCGGCAAGGGAGGGGAAGTGGGAGTGTGAGAT GATTCTGGATGCGATGACGGAGGAGGAATATGTGTGGGTAGAGGTGTTGC AGGAAGGGCACGCTGTGCGCGTGATGAGGGAGGAAGGAGGAGGACGAGGA CGAGGAGGGAGGAGAAAAACGGTGTAG back to top
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