NO03G04010.1, NO03G04010.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO03G04010.1
Unique Name	NO03G04010.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	1272
Alignment location	chr3:1169977..1171685 -

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr3	genome	chr3:1169977..1171685 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

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BLAST of NO03G04010.1 vs.
Match: EWM29837.1 (aspartate aminotransferase [Nannochloropsis gaditana])

HSP 1 Score: 680.6 bits (1755), Expect = 3.000e-192
Identity = 337/412 (81.80%), Postives = 372/412 (90.29%), Query Frame = 0

Query:   11 ASGDGGLTSHEKESLLNPLLSSVAVSKTIEIHAMTKNMEARGETVVSLCVGEPDFPPPAEVVEATIQAVREGHTRYTAVTGEAALRAAICKDLETRKGIKYTPEEIIVGNGAKQEVYQALLALCRPGDEVIIPAPYWPSYPEIVKLTGATPVILGTKAADGFLVDPEALSAAITPKTRMFIFCNPSNPTGAVHPPSVVDAVGAILKRPHAKHVWALSDEIYERIVYDTPHKSLAAVSGLRNRVLLINGFSKAFAMTGYRLGYLAGPLAVIKGCTTLQSQITSCASSIAQRAGTAALGLPEAAMVPSVAMMRKKRDQVMAALAKIPRVTCSIPQGAFYVLPDISAYYHKTTPAGKIIRDGHELCMYLLKEYKVALVPGDSFGDSSTIRISYATSEKELDIALTRLGDCLASLS 423
            A+ D G T +E   +LNPLLS+V VSKTIEIHAMTK+MEARGE VVSLCVGEPDFPPPAEVVEAT+QA+REGHTRYTAVTG+AALR AICKDLE RKG++Y  EEIIVGNGAKQEVYQA+LALCRPGDEVIIPAPYWPSYPEIVKL GATP+IL T A+ GFL+DPEALS A+TP+TRMFIFCNPSNPTGAVHPP +VDA+G +LKR HAKHVWALSDEIYERI+YDTPHKSLAAV GLR+RVLLINGFSKA+AMTGYRLGYLAGP  VIKGCTTLQSQITSCASSIAQ+AG AAL LP   M PSV +MRKKRD+VM+AL +IPRV CS+PQGAFYVLPD+S YYHK TP G+IIRDGHELCMYLLKEYKVALVPG+SFG  +TIRISYATSE +LDIALTRL +CLASL+
Sbjct:   98 AARDSGSTGNE--GMLNPLLSTVEVSKTIEIHAMTKSMEARGEAVVSLCVGEPDFPPPAEVVEATVQALREGHTRYTAVTGDAALRQAICKDLEKRKGVRYAAEEIIVGNGAKQEVYQAVLALCRPGDEVIIPAPYWPSYPEIVKLAGATPIILETTASSGFLLDPEALSQAVTPQTRMFIFCNPSNPTGAVHPPELVDALGDVLKRRHAKHVWALSDEIYERIIYDTPHKSLAAVPGLRDRVLLINGFSKAYAMTGYRLGYLAGPSPVIKGCTTLQSQITSCASSIAQKAGIAALQLPATTMAPSVEIMRKKRDRVMSALGQIPRVACSVPQGAFYVLPDVSWYYHKKTPEGQIIRDGHELCMYLLKEYKVALVPGESFGAPTTIRISYATSEADLDIALTRLAECLASLT 507

The following BLAST results are available for this feature:

BLAST of NO03G04010.1 vs.

BLAST of NO03G04010.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
EWM29837.1	3.000e-192	81.80	aspartate aminotransferase [Nannochloropsis gadita...	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO03G04010	NO03G04010	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO03G04010.1	NO03G04010.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO03G04010.1.cds1	NO03G04010.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO03G04010.1.cds2	NO03G04010.1.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO03G04010.1.cds3	NO03G04010.1.cds3	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr3:1169977..1171685-
coding sequence from alignment at chr3:1169977..1171685-

mRNA sequence

>NO03G04010.1 ID=NO03G04010.1|Name=NO03G04010.1|organism=Nannochloropsis oceanica|type=mRNA|length=1272bp
ATGTCGTCACTATGCACTGCCATCGCGACGGCAAGCGGCGACGGAGGTTT
AACCAGTCATGAAAAAGAGAGCCTACTCAATCCCTTGCTGAGCTCAGTCG
CCGTGAGCAAGACCATTGAGATTCACGCCATGACCAAGAATATGGAGGCC
CGGGGTGAGACTGTCGTGTCATTGTGCGTTGGAGAACCAGATTTCCCCCC
ACCTGCCGAGGTAGTCGAAGCCACCATCCAAGCCGTCCGCGAAGGCCACA
CCCGCTACACAGCTGTCACAGGAGAAGCCGCCCTGAGGGCAGCTATCTGT
AAAGATTTAGAAACTCGAAAGGGCATCAAATATACCCCTGAAGAGATTAT
TGTTGGGAATGGAGCCAAGCAAGAGGTGTATCAAGCCCTGCTTGCTTTGT
GTCGACCGGGGGATGAAGTCATTATACCGGCCCCATACTGGCCTAGCTAC
CCAGAGATTGTCAAGTTAACGGGAGCGACACCGGTCATCTTGGGGACCAA
GGCGGCGGATGGATTTTTGGTAGACCCTGAGGCGCTGTCAGCAGCGATCA
CGCCCAAGACTCGAATGTTCATCTTCTGTAATCCCAGCAATCCAACAGGG
GCAGTGCACCCCCCCTCCGTCGTGGACGCAGTGGGAGCCATCCTTAAACG
TCCTCATGCCAAGCATGTTTGGGCTTTGTCTGACGAGATATACGAGCGGA
TCGTCTACGACACACCACACAAGAGCCTCGCAGCCGTCTCTGGCCTGCGT
AATCGTGTATTGTTAATAAATGGATTTTCGAAAGCCTTTGCCATGACGGG
CTATCGGCTTGGATACCTTGCTGGTCCTCTGGCAGTCATCAAGGGATGTA
CCACCCTTCAGTCGCAAATCACATCGTGCGCCAGCAGCATTGCCCAACGA
GCGGGCACCGCGGCGTTAGGTCTTCCGGAAGCAGCGATGGTACCCTCGGT
GGCGATGATGCGTAAGAAGCGGGATCAAGTCATGGCGGCCTTGGCCAAAA
TCCCGCGGGTGACGTGCTCGATTCCGCAAGGGGCCTTTTATGTCCTGCCT
GACATATCGGCATACTACCACAAGACTACACCCGCGGGAAAAATCATTCG
GGATGGGCACGAGCTGTGTATGTATTTATTGAAAGAGTACAAGGTGGCAT
TGGTCCCTGGGGATTCATTCGGGGACTCATCTACCATCCGCATTTCTTAT
GCGACGTCGGAGAAAGAGCTGGACATAGCTCTGACCCGATTAGGCGACTG
CTTGGCCTCGCTTTCTCAGTAG

protein sequence of NO03G04010.1

>NO03G04010.1-protein ID=NO03G04010.1-protein|Name=NO03G04010.1|organism=Nannochloropsis oceanica|type=polypeptide|length=424bp
MSSLCTAIATASGDGGLTSHEKESLLNPLLSSVAVSKTIEIHAMTKNMEA
RGETVVSLCVGEPDFPPPAEVVEATIQAVREGHTRYTAVTGEAALRAAIC
KDLETRKGIKYTPEEIIVGNGAKQEVYQALLALCRPGDEVIIPAPYWPSY
PEIVKLTGATPVILGTKAADGFLVDPEALSAAITPKTRMFIFCNPSNPTG
AVHPPSVVDAVGAILKRPHAKHVWALSDEIYERIVYDTPHKSLAAVSGLR
NRVLLINGFSKAFAMTGYRLGYLAGPLAVIKGCTTLQSQITSCASSIAQR
AGTAALGLPEAAMVPSVAMMRKKRDQVMAALAKIPRVTCSIPQGAFYVLP
DISAYYHKTTPAGKIIRDGHELCMYLLKEYKVALVPGDSFGDSSTIRISY
ATSEKELDIALTRLGDCLASLSQ*

mRNA from alignment at chr3:1169977..1171685-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO03G04010.1 ID=NO03G04010.1|Name=NO03G04010.1|organism=Nannochloropsis oceanica|type=mRNA|length=1709bp|location=Sequence derived from alignment at chr3:1169977..1171685- (Nannochloropsis oceanica)
ATGTCGTCACTATGCACTGCCATCGCGACGGCAAGCGGCGACGGAGGTTT
AACCAGTCATGAAAAAGAGAGCCTACTCAATCCCTTGCTGAGCTCAGTCG
CCGTGAGCAAGACCATTGAGATTCACGCCATGACCAAGAATATGGAGGCC
CGGGGTGAGACTGTCGTGTCATTGTGCGTTGGAGAACCAGATTTCCCCCC
ACCTGCCGGTAGGTTTGAAGGACCTCGATCCTGAGAGCTAGATGGAAGCT
GCAGTCAGAGCAGACACCATATGTTTCCTATAAACCCTCCTGGCTAGAAC
GTTTGTCCATGTTTTCAGGAGCGTGGTCACGCAAACGTTTTTCAAATTAT
TAACATGTATTTATCTTTACTGTGTACTCACAGACCTGTCGTCTAAATTC
CTGGCTCACCCACACCATACAGAGGTAGTCGAAGCCACCATCCAAGCCGT
CCGCGAAGGCCACACCCGCTACACAGCTGTCACAGGAGAAGCCGCCCTGA
GGGCAGCTATCTGTAAAGATTTAGAAACTCGAAAGGGCATCAAATATACC
CCTGAAGAGATTATTGTTGGGAATGGAGCCAAGCAAGAGGTGTATCAAGC
CCTGCTTGCTTTGTGTCGACCGGGGGATGAAGTCATTATACCGGCCCCAT
ACTGGCCTAGCTACCCAGAGATTGTCAAGTTAACGGGAGCGACACCGGTC
ATCTTGGGGACCAAGGCGGCGGATGGATTTTTGGTAGACCCTGAGGCGCT
GTCAGCAGCGATCACGCCCAAGACTCGAATGGTAAGTGGGAGAGAGAGGA
GAGGGTGAGGGGAGGAGGAAAAGGGTCGGCACGCTCGCTGTGGAATGCGA
CTGGTTTTCGCACTTAATGGTGAGATTCTAAATTGCCGGGTCATCCTCAA
AACGATTGGCGACAGGGCTATCTTCTTCTTTCCCATGCACCCATGCACCC
TCTGCCGCTGTCTTAACACATACTCTCCTCCTTTCCTCCCTGCCCACCAT
ACAGTTCATCTTCTGTAATCCCAGCAATCCAACAGGGGCAGTGCACCCCC
CCTCCGTCGTGGACGCAGTGGGAGCCATCCTTAAACGTCCTCATGCCAAG
CATGTTTGGGCTTTGTCTGACGAGATATACGAGCGGATCGTCTACGACAC
ACCACACAAGAGCCTCGCAGCCGTCTCTGGCCTGCGTAATCGTGTATTGT
TAATAAATGGATTTTCGAAAGCCTTTGCCATGACGGGCTATCGGCTTGGA
TACCTTGCTGGTCCTCTGGCAGTCATCAAGGGATGTACCACCCTTCAGTC
GCAAATCACATCGTGCGCCAGCAGCATTGCCCAACGAGCGGGCACCGCGG
CGTTAGGTCTTCCGGAAGCAGCGATGGTACCCTCGGTGGCGATGATGCGT
AAGAAGCGGGATCAAGTCATGGCGGCCTTGGCCAAAATCCCGCGGGTGAC
GTGCTCGATTCCGCAAGGGGCCTTTTATGTCCTGCCTGACATATCGGCAT
ACTACCACAAGACTACACCCGCGGGAAAAATCATTCGGGATGGGCACGAG
CTGTGTATGTATTTATTGAAAGAGTACAAGGTGGCATTGGTCCCTGGGGA
TTCATTCGGGGACTCATCTACCATCCGCATTTCTTATGCGACGTCGGAGA
AAGAGCTGGACATAGCTCTGACCCGATTAGGCGACTGCTTGGCCTCGCTT
TCTCAGTAG

Coding sequence (CDS) from alignment at chr3:1169977..1171685-

>NO03G04010.1 ID=NO03G04010.1|Name=NO03G04010.1|organism=Nannochloropsis oceanica|type=CDS|length=1272bp|location=Sequence derived from alignment at chr3:1169977..1171685- (Nannochloropsis oceanica)
ATGTCGTCACTATGCACTGCCATCGCGACGGCAAGCGGCGACGGAGGTTT
AACCAGTCATGAAAAAGAGAGCCTACTCAATCCCTTGCTGAGCTCAGTCG
CCGTGAGCAAGACCATTGAGATTCACGCCATGACCAAGAATATGGAGGCC
CGGGGTGAGACTGTCGTGTCATTGTGCGTTGGAGAACCAGATTTCCCCCC
ACCTGCCGAGGTAGTCGAAGCCACCATCCAAGCCGTCCGCGAAGGCCACA
CCCGCTACACAGCTGTCACAGGAGAAGCCGCCCTGAGGGCAGCTATCTGT
AAAGATTTAGAAACTCGAAAGGGCATCAAATATACCCCTGAAGAGATTAT
TGTTGGGAATGGAGCCAAGCAAGAGGTGTATCAAGCCCTGCTTGCTTTGT
GTCGACCGGGGGATGAAGTCATTATACCGGCCCCATACTGGCCTAGCTAC
CCAGAGATTGTCAAGTTAACGGGAGCGACACCGGTCATCTTGGGGACCAA
GGCGGCGGATGGATTTTTGGTAGACCCTGAGGCGCTGTCAGCAGCGATCA
CGCCCAAGACTCGAATGTTCATCTTCTGTAATCCCAGCAATCCAACAGGG
GCAGTGCACCCCCCCTCCGTCGTGGACGCAGTGGGAGCCATCCTTAAACG
TCCTCATGCCAAGCATGTTTGGGCTTTGTCTGACGAGATATACGAGCGGA
TCGTCTACGACACACCACACAAGAGCCTCGCAGCCGTCTCTGGCCTGCGT
AATCGTGTATTGTTAATAAATGGATTTTCGAAAGCCTTTGCCATGACGGG
CTATCGGCTTGGATACCTTGCTGGTCCTCTGGCAGTCATCAAGGGATGTA
CCACCCTTCAGTCGCAAATCACATCGTGCGCCAGCAGCATTGCCCAACGA
GCGGGCACCGCGGCGTTAGGTCTTCCGGAAGCAGCGATGGTACCCTCGGT
GGCGATGATGCGTAAGAAGCGGGATCAAGTCATGGCGGCCTTGGCCAAAA
TCCCGCGGGTGACGTGCTCGATTCCGCAAGGGGCCTTTTATGTCCTGCCT
GACATATCGGCATACTACCACAAGACTACACCCGCGGGAAAAATCATTCG
GGATGGGCACGAGCTGTGTATGTATTTATTGAAAGAGTACAAGGTGGCAT
TGGTCCCTGGGGATTCATTCGGGGACTCATCTACCATCCGCATTTCTTAT
GCGACGTCGGAGAAAGAGCTGGACATAGCTCTGACCCGATTAGGCGACTG
CTTGGCCTCGCTTTCTCAGTAG

Synonyms

Publications