NO03G04000.1, NO03G04000.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO03G04000.1
Unique NameNO03G04000.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1839
Alignment locationchr3:1167777..1169615 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:1167777..1169615 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO03G04000.1 vs.
Match: EWM29831.1 (major facilitator superfamily [Nannochloropsis gaditana])

HSP 1 Score: 720.7 bits (1859), Expect = 3.800e-204
Identity = 395/536 (73.69%), Postives = 447/536 (83.40%), Query Frame = 0 
Query:   83 MSEVDELLNLGLKPRTMKLITLVLACANAADAVEVLAVGFFLTVYTNKDGSELSGANKEVLTGSIYMGMLVGGVVGGWLSDVVGRKRTLIWSLALNGVAGIVSAASPNLGWLAIFRVLAGIGVGTSVPCLFTLGAELFPVQTRGVYLSYIASFWMVGSIYAAAAAWIILGLNTQGKRILPGWTWRAFIIVAALPVFLTLALALVFLPESPRYLIQKGRYVEAAKSLHKFTGRIVNPDALVPNSGNYDGDHHFVDETDRLTG----APVANGEEGTTTSATVLSSGPS-SSSSPSLARRRHRRLSMKRFESVNAVFAGPMRLTTVRLMVVWFTLCFGTYGLSTWISSIFKVIGIQNEFLPTFLFALANLPGNVASIVLIERLGRKRLLAYSMLLAAGSAFLFAFTSSRATWLAVVAACLFQAFSVAGWNSLDALSTESFPTATRTTAMGLLSGTGRFASLIAMFVNGSLEHSVALLFTVTGTMTIFGAMTAFWLPYEPTGQSLD-MMGGGGGEGV--MAGERDWRSFEPVVDGGDDG 611
            MSEVD+LLN G+KP T+ LIT VLACANAADAVEVLAVGFFLTVY N DGSELS A+K  LTGSIYMGML+GGVVGGWLSDV GRK TL +SLALNG+AG++SA+S NL WL  FRVLAGIGVG SVPCLFTLGAELFPVQTRGVYLSY+ASFWMVGSIYAA AAWIILGL+  G+RILPGWTWR F++ AALPVFLTL  A   LPESPRYLIQ+GRY EAAK+L + TGR V+P++LV   G  + D    DE + LT      P A  +E   TS   LSS PS S+++P+++ R+  +  +K  ESV  VF G +RLTT+RLMVVWFTLCFGTYGLSTWIS+IFKVIGI+NEFLPTFLFALANLPGN+AS VLIERLGRKRLLA+SMLLAAGSAF+FAFTS+RATWLAVVAAC FQAFSVAGWN+LDALSTESFPTA RTT MGLLSGTGRF+SLIAMFV+GSLEHSVALLFTVTGT T+ GA+TAFWLPYEPTGQSLD ++G GG +G     G + WRSFEP V+ GD+G
Sbjct:   89 MSEVDDLLNSGVKPSTLNLITFVLACANAADAVEVLAVGFFLTVYRNADGSELSSADKSFLTGSIYMGMLLGGVVGGWLSDVAGRKGTLTFSLALNGLAGVISASSSNLEWLITFRVLAGIGVGASVPCLFTLGAELFPVQTRGVYLSYVASFWMVGSIYAAGAAWIILGLDFDGERILPGWTWRPFVVAAALPVFLTLISACFLLPESPRYLIQRGRYTEAAKNLRRLTGRHVSPESLV---GGGEDDTLTDDEANPLTTDGMLLPTAAKDEENGTS---LSSAPSRSAATPTVSPRQRGKAWLKVLESVAGVFRGSLRLTTLRLMVVWFTLCFGTYGLSTWISTIFKVIGIKNEFLPTFLFALANLPGNIASFVLIERLGRKRLLAFSMLLAAGSAFVFAFTSTRATWLAVVAACCFQAFSVAGWNALDALSTESFPTAMRTTGMGLLSGTGRFSSLIAMFVDGSLEHSVALLFTVTGTTTVLGALTAFWLPYEPTGQSLDGLVGRGGKQGKERRRGSKVWRSFEP-VNVGDEG 617
The following BLAST results are available for this feature:
BLAST of NO03G04000.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29831.13.800e-20473.69major facilitator superfamily [Nannochloropsis gad... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO03G04000NO03G04000Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO03G04000.1NO03G04000.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO03G04000.1.cds1NO03G04000.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO03G04000.1 ID=NO03G04000.1|Name=NO03G04000.1|organism=Nannochloropsis oceanica|type=mRNA|length=1839bp
ATGACCACGCCCCACTCCGCGACACCACCATCACCACTACGTTCAGTAGC
AGCAGCAGCAATAGCCTACGGAGCGGGAGGCATTGAGCCGGTTGACATCG
TGTACAAAAACCCGGGAGTCAAGGACAAGGAAAGCAACGGCGACGACAAG
TGCAACCTCGAAGACGCCCCCACCAGAAAGGCCACTTCCCTCAGTCCCCG
CAAAAGAATACCAGTTCCTAATATAGCCACAGCATCCGACCGCACAATGT
CGGAGGTAGACGAGCTGTTGAACCTGGGGCTCAAGCCCCGCACCATGAAA
CTCATTACCCTCGTATTGGCTTGCGCCAACGCCGCCGACGCCGTGGAAGT
GCTTGCCGTGGGCTTTTTCCTGACAGTGTACACGAACAAGGATGGCTCCG
AGCTATCCGGGGCCAACAAAGAAGTGTTGACAGGGTCTATTTACATGGGC
ATGTTGGTGGGCGGGGTGGTGGGGGGGTGGCTTTCAGACGTCGTGGGGAG
GAAGCGAACCCTGATTTGGTCCTTGGCCTTGAACGGCGTGGCTGGCATCG
TTTCTGCTGCTTCACCCAATTTGGGATGGCTGGCGATCTTTCGTGTACTT
GCTGGGATTGGAGTAGGCACTTCGGTTCCTTGTCTCTTCACGCTTGGCGC
GGAACTTTTCCCTGTGCAGACCCGAGGGGTGTATTTGTCGTACATTGCCA
GTTTTTGGATGGTGGGATCTATTTATGCCGCTGCTGCCGCGTGGATCATA
TTGGGATTGAATACGCAGGGTAAGCGTATTTTACCGGGGTGGACGTGGCG
GGCATTTATCATAGTGGCGGCGTTGCCTGTCTTTTTGACTTTGGCCTTGG
CATTGGTTTTCCTTCCCGAGTCCCCGCGCTATCTCATTCAAAAAGGGAGG
TACGTGGAAGCAGCCAAAAGTCTGCATAAATTCACCGGGAGAATAGTCAA
CCCAGATGCGCTCGTACCGAATTCGGGGAACTATGACGGTGATCATCACT
TTGTTGACGAGACCGACCGTTTAACTGGCGCTCCTGTTGCGAATGGGGAA
GAGGGCACGACCACCTCGGCTACGGTGCTGTCCTCGGGCCCGTCCTCCTC
CTCATCCCCTTCGCTGGCTCGTCGGCGACATCGACGACTGTCTATGAAAC
GATTTGAAAGCGTGAATGCCGTGTTTGCGGGCCCCATGCGGCTGACCACG
GTGCGGTTGATGGTGGTGTGGTTTACGCTCTGCTTTGGCACGTACGGACT
GAGCACGTGGATCAGCAGTATCTTCAAGGTAATTGGGATCCAGAATGAGT
TTTTACCGACCTTTTTGTTTGCCCTGGCAAATTTACCGGGGAATGTGGCG
TCGATTGTGTTGATTGAACGCTTGGGTAGGAAGCGATTGCTGGCATATTC
GATGTTACTTGCTGCGGGGTCTGCCTTTTTGTTTGCTTTCACAAGCTCAC
GCGCGACGTGGTTAGCGGTGGTAGCCGCATGCCTCTTTCAGGCTTTTTCA
GTGGCGGGTTGGAATTCGTTGGATGCTTTGTCGACCGAATCATTTCCGAC
TGCGACGAGGACGACGGCGATGGGATTGCTTTCGGGGACAGGGAGGTTTG
CGTCCTTAATTGCCATGTTTGTGAACGGTTCGTTGGAGCACAGCGTGGCG
CTATTGTTCACGGTGACGGGAACTATGACGATTTTCGGGGCGATGACGGC
GTTCTGGCTCCCTTACGAGCCGACGGGTCAGTCTTTGGACATGATGGGAG
GAGGGGGAGGGGAAGGAGTGATGGCCGGAGAGAGGGATTGGCGGAGTTTT
GAGCCAGTGGTGGATGGAGGGGATGATGGAGAGCCTTAG
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protein sequence of NO03G04000.1

>NO03G04000.1-protein ID=NO03G04000.1-protein|Name=NO03G04000.1|organism=Nannochloropsis oceanica|type=polypeptide|length=613bp
MTTPHSATPPSPLRSVAAAAIAYGAGGIEPVDIVYKNPGVKDKESNGDDK
CNLEDAPTRKATSLSPRKRIPVPNIATASDRTMSEVDELLNLGLKPRTMK
LITLVLACANAADAVEVLAVGFFLTVYTNKDGSELSGANKEVLTGSIYMG
MLVGGVVGGWLSDVVGRKRTLIWSLALNGVAGIVSAASPNLGWLAIFRVL
AGIGVGTSVPCLFTLGAELFPVQTRGVYLSYIASFWMVGSIYAAAAAWII
LGLNTQGKRILPGWTWRAFIIVAALPVFLTLALALVFLPESPRYLIQKGR
YVEAAKSLHKFTGRIVNPDALVPNSGNYDGDHHFVDETDRLTGAPVANGE
EGTTTSATVLSSGPSSSSSPSLARRRHRRLSMKRFESVNAVFAGPMRLTT
VRLMVVWFTLCFGTYGLSTWISSIFKVIGIQNEFLPTFLFALANLPGNVA
SIVLIERLGRKRLLAYSMLLAAGSAFLFAFTSSRATWLAVVAACLFQAFS
VAGWNSLDALSTESFPTATRTTAMGLLSGTGRFASLIAMFVNGSLEHSVA
LLFTVTGTMTIFGAMTAFWLPYEPTGQSLDMMGGGGGEGVMAGERDWRSF
EPVVDGGDDGEP*
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mRNA from alignment at chr3:1167777..1169615-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO03G04000.1 ID=NO03G04000.1|Name=NO03G04000.1|organism=Nannochloropsis oceanica|type=mRNA|length=1839bp|location=Sequence derived from alignment at chr3:1167777..1169615- (Nannochloropsis oceanica)
ATGACCACGCCCCACTCCGCGACACCACCATCACCACTACGTTCAGTAGC
AGCAGCAGCAATAGCCTACGGAGCGGGAGGCATTGAGCCGGTTGACATCG
TGTACAAAAACCCGGGAGTCAAGGACAAGGAAAGCAACGGCGACGACAAG
TGCAACCTCGAAGACGCCCCCACCAGAAAGGCCACTTCCCTCAGTCCCCG
CAAAAGAATACCAGTTCCTAATATAGCCACAGCATCCGACCGCACAATGT
CGGAGGTAGACGAGCTGTTGAACCTGGGGCTCAAGCCCCGCACCATGAAA
CTCATTACCCTCGTATTGGCTTGCGCCAACGCCGCCGACGCCGTGGAAGT
GCTTGCCGTGGGCTTTTTCCTGACAGTGTACACGAACAAGGATGGCTCCG
AGCTATCCGGGGCCAACAAAGAAGTGTTGACAGGGTCTATTTACATGGGC
ATGTTGGTGGGCGGGGTGGTGGGGGGGTGGCTTTCAGACGTCGTGGGGAG
GAAGCGAACCCTGATTTGGTCCTTGGCCTTGAACGGCGTGGCTGGCATCG
TTTCTGCTGCTTCACCCAATTTGGGATGGCTGGCGATCTTTCGTGTACTT
GCTGGGATTGGAGTAGGCACTTCGGTTCCTTGTCTCTTCACGCTTGGCGC
GGAACTTTTCCCTGTGCAGACCCGAGGGGTGTATTTGTCGTACATTGCCA
GTTTTTGGATGGTGGGATCTATTTATGCCGCTGCTGCCGCGTGGATCATA
TTGGGATTGAATACGCAGGGTAAGCGTATTTTACCGGGGTGGACGTGGCG
GGCATTTATCATAGTGGCGGCGTTGCCTGTCTTTTTGACTTTGGCCTTGG
CATTGGTTTTCCTTCCCGAGTCCCCGCGCTATCTCATTCAAAAAGGGAGG
TACGTGGAAGCAGCCAAAAGTCTGCATAAATTCACCGGGAGAATAGTCAA
CCCAGATGCGCTCGTACCGAATTCGGGGAACTATGACGGTGATCATCACT
TTGTTGACGAGACCGACCGTTTAACTGGCGCTCCTGTTGCGAATGGGGAA
GAGGGCACGACCACCTCGGCTACGGTGCTGTCCTCGGGCCCGTCCTCCTC
CTCATCCCCTTCGCTGGCTCGTCGGCGACATCGACGACTGTCTATGAAAC
GATTTGAAAGCGTGAATGCCGTGTTTGCGGGCCCCATGCGGCTGACCACG
GTGCGGTTGATGGTGGTGTGGTTTACGCTCTGCTTTGGCACGTACGGACT
GAGCACGTGGATCAGCAGTATCTTCAAGGTAATTGGGATCCAGAATGAGT
TTTTACCGACCTTTTTGTTTGCCCTGGCAAATTTACCGGGGAATGTGGCG
TCGATTGTGTTGATTGAACGCTTGGGTAGGAAGCGATTGCTGGCATATTC
GATGTTACTTGCTGCGGGGTCTGCCTTTTTGTTTGCTTTCACAAGCTCAC
GCGCGACGTGGTTAGCGGTGGTAGCCGCATGCCTCTTTCAGGCTTTTTCA
GTGGCGGGTTGGAATTCGTTGGATGCTTTGTCGACCGAATCATTTCCGAC
TGCGACGAGGACGACGGCGATGGGATTGCTTTCGGGGACAGGGAGGTTTG
CGTCCTTAATTGCCATGTTTGTGAACGGTTCGTTGGAGCACAGCGTGGCG
CTATTGTTCACGGTGACGGGAACTATGACGATTTTCGGGGCGATGACGGC
GTTCTGGCTCCCTTACGAGCCGACGGGTCAGTCTTTGGACATGATGGGAG
GAGGGGGAGGGGAAGGAGTGATGGCCGGAGAGAGGGATTGGCGGAGTTTT
GAGCCAGTGGTGGATGGAGGGGATGATGGAGAGCCTTAG
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Coding sequence (CDS) from alignment at chr3:1167777..1169615-

>NO03G04000.1 ID=NO03G04000.1|Name=NO03G04000.1|organism=Nannochloropsis oceanica|type=CDS|length=1839bp|location=Sequence derived from alignment at chr3:1167777..1169615- (Nannochloropsis oceanica)
ATGACCACGCCCCACTCCGCGACACCACCATCACCACTACGTTCAGTAGC
AGCAGCAGCAATAGCCTACGGAGCGGGAGGCATTGAGCCGGTTGACATCG
TGTACAAAAACCCGGGAGTCAAGGACAAGGAAAGCAACGGCGACGACAAG
TGCAACCTCGAAGACGCCCCCACCAGAAAGGCCACTTCCCTCAGTCCCCG
CAAAAGAATACCAGTTCCTAATATAGCCACAGCATCCGACCGCACAATGT
CGGAGGTAGACGAGCTGTTGAACCTGGGGCTCAAGCCCCGCACCATGAAA
CTCATTACCCTCGTATTGGCTTGCGCCAACGCCGCCGACGCCGTGGAAGT
GCTTGCCGTGGGCTTTTTCCTGACAGTGTACACGAACAAGGATGGCTCCG
AGCTATCCGGGGCCAACAAAGAAGTGTTGACAGGGTCTATTTACATGGGC
ATGTTGGTGGGCGGGGTGGTGGGGGGGTGGCTTTCAGACGTCGTGGGGAG
GAAGCGAACCCTGATTTGGTCCTTGGCCTTGAACGGCGTGGCTGGCATCG
TTTCTGCTGCTTCACCCAATTTGGGATGGCTGGCGATCTTTCGTGTACTT
GCTGGGATTGGAGTAGGCACTTCGGTTCCTTGTCTCTTCACGCTTGGCGC
GGAACTTTTCCCTGTGCAGACCCGAGGGGTGTATTTGTCGTACATTGCCA
GTTTTTGGATGGTGGGATCTATTTATGCCGCTGCTGCCGCGTGGATCATA
TTGGGATTGAATACGCAGGGTAAGCGTATTTTACCGGGGTGGACGTGGCG
GGCATTTATCATAGTGGCGGCGTTGCCTGTCTTTTTGACTTTGGCCTTGG
CATTGGTTTTCCTTCCCGAGTCCCCGCGCTATCTCATTCAAAAAGGGAGG
TACGTGGAAGCAGCCAAAAGTCTGCATAAATTCACCGGGAGAATAGTCAA
CCCAGATGCGCTCGTACCGAATTCGGGGAACTATGACGGTGATCATCACT
TTGTTGACGAGACCGACCGTTTAACTGGCGCTCCTGTTGCGAATGGGGAA
GAGGGCACGACCACCTCGGCTACGGTGCTGTCCTCGGGCCCGTCCTCCTC
CTCATCCCCTTCGCTGGCTCGTCGGCGACATCGACGACTGTCTATGAAAC
GATTTGAAAGCGTGAATGCCGTGTTTGCGGGCCCCATGCGGCTGACCACG
GTGCGGTTGATGGTGGTGTGGTTTACGCTCTGCTTTGGCACGTACGGACT
GAGCACGTGGATCAGCAGTATCTTCAAGGTAATTGGGATCCAGAATGAGT
TTTTACCGACCTTTTTGTTTGCCCTGGCAAATTTACCGGGGAATGTGGCG
TCGATTGTGTTGATTGAACGCTTGGGTAGGAAGCGATTGCTGGCATATTC
GATGTTACTTGCTGCGGGGTCTGCCTTTTTGTTTGCTTTCACAAGCTCAC
GCGCGACGTGGTTAGCGGTGGTAGCCGCATGCCTCTTTCAGGCTTTTTCA
GTGGCGGGTTGGAATTCGTTGGATGCTTTGTCGACCGAATCATTTCCGAC
TGCGACGAGGACGACGGCGATGGGATTGCTTTCGGGGACAGGGAGGTTTG
CGTCCTTAATTGCCATGTTTGTGAACGGTTCGTTGGAGCACAGCGTGGCG
CTATTGTTCACGGTGACGGGAACTATGACGATTTTCGGGGCGATGACGGC
GTTCTGGCTCCCTTACGAGCCGACGGGTCAGTCTTTGGACATGATGGGAG
GAGGGGGAGGGGAAGGAGTGATGGCCGGAGAGAGGGATTGGCGGAGTTTT
GAGCCAGTGGTGGATGGAGGGGATGATGGAGAGCCTTAG
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Synonyms
Publications