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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr3 | genome | chr3:1161828..1163874 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO03G03980.1 vs.
Match: EWM29817.1 (microcystin synthetase-associated thioesterase [Nannochloropsis gaditana]) HSP 1 Score: 623.2 bits (1606), Expect = 4.900e-175 Identity = 295/360 (81.94%), Postives = 323/360 (89.72%), Query Frame = 0
Query: 1 MGVSGSKGCCMCCVPDKALMACGPAVPIAKELHSESAQVAPSGHGVH----HKGLGEAIQARTRCISACAVRCIHDHLPGHRHDHMKAPAVMREEEAKKWLLVKRKDFARVRMVCFPYAGGNSNFYKTWDFKETEMVLVELPGRNARYNEKAMTDVYSIAKKIASALDAVGYLKSKIPLVFFGHSFGAIVSTLVAQVLRNQYNYTPKHLIVSGCVPLHMRAGRPKFSVPNDNDLVTSLLDMGGITKEMAKNRDVVSQFLPALKGDYLAVDKYVYHEAEPLACPILALGSDQDMRVPQQETAEWARFTAGEFESRIFPGGHFFLKPLEKDVIAYISSVIFKDMTGPGAMALPGFILFDPNK 357
MG + SKGCC+CCVPD AL +CGPAVPIAKE+ + AP GHG H +GLGEAIQ RTRCISACAVRCIHDHLPGHRHDH +APA MREEEA+KWL VKRKDFARVR+VCFPYAGGNSNFYKTWD KE EMV VELPGRNARYNEK +TDVY IAKKIA+AL +GY++SKIPLVFFGHSFGAIVSTLVAQ+LRNQYNYTPKHL+VSGCVPLH+RAGRPKFSV ND++LV+SLLDMGGITKEMA+NRDVV+QFLPALKGDYLAVDKYVYHEA PL CPILALGSDQD+RVPQ ET EWARFT EFESRIFPGGHFFLKPLEK+V+AY+SSVIF+D+TGPGA LPGFILFDPNK
Sbjct: 41 MGCTSSKGCCLCCVPDAALKSCGPAVPIAKEI--TNGYPAPPGHGTHTPTHSQGLGEAIQTRTRCISACAVRCIHDHLPGHRHDHQRAPAKMREEEARKWLSVKRKDFARVRLVCFPYAGGNSNFYKTWDVKEAEMVTVELPGRNARYNEKVITDVYLIAKKIAAALAGLGYIESKIPLVFFGHSFGAIVSTLVAQILRNQYNYTPKHLVVSGCVPLHLRAGRPKFSVANDDELVSSLLDMGGITKEMARNRDVVTQFLPALKGDYLAVDKYVYHEAPPLDCPILALGSDQDLRVPQHETEEWARFTTKEFESRIFPGGHFFLKPLEKEVVAYVSSVIFRDLTGPGATDLPGFILFDPNK 398
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO03G03980.1 ID=NO03G03980.1|Name=NO03G03980.1|organism=Nannochloropsis oceanica|type=mRNA|length=1722bp CGGGCGGAACTCCGCTGTTCCACAGTAAACTGTGAAGTTAACTGTTTATC TGTTTACTACTTTCTTTACTCCCTTTCTTCTTAAACAAATACGCACACAA CAAGGACAACAACAACAACGAAAAAACAAGGCATACAATAGATTTAGAAG AGGCCAATCTAGCTGAAAGCTAGTGCTGGCGTGTATGCGGGCTTCGTCGT GCACACGCACTCGATGGCCCATCCCTCCAATATTTCTTGCATTGCCGCAA CGCACACTCTCATCGTACTCAACCACGACCGCGCACACTACCACTACATT ATAATAGGGAGGCCCTAGGGGAAGAGTCCTGTGCAGCCATCGTCGTTTAA GTCGTCACCCTTCATTCTATTTCTTGTAAATGGGTGTCTCCGGCTCCAAG GGCTGCTGCATGTGCTGTGTCCCCGACAAGGCCCTCATGGCCTGTGGACC TGCCGTGCCCATTGCAAAGGAGCTGCACAGTGAATCTGCGCAGGTCGCGC CCTCAGGCCATGGGGTCCATCATAAGGGGTTGGGCGAGGCAATCCAGGCC CGGACACGTTGTATATCTGCGTGTGCTGTCCGCTGCATCCACGACCATTT GCCAGGCCATCGACACGACCATATGAAGGCGCCAGCGGTGATGAGGGAGG AAGAGGCGAAAAAGTGGCTGTTAGTCAAGCGCAAGGATTTTGCCCGGGTG CGTATGGTTTGTTTTCCGTATGCAGGCGGGAACTCTAATTTCTACAAGAC GTGGGATTTCAAGGAGACGGAGATGGTATTGGTGGAGCTGCCGGGGCGTA ATGCCCGGTACAATGAAAAGGCCATGACAGACGTGTACTCAATCGCGAAG AAGATTGCTTCGGCATTGGATGCGGTCGGGTATTTGAAGTCGAAGATTCC GTTGGTGTTTTTCGGTCACAGCTTTGGTGCGATCGTGTCGACGTTGGTGG CGCAAGTGTTGCGGAATCAGTATAATTATACACCCAAGCATTTGATTGTC TCGGGTTGTGTACCCTTGCATATGAGGGCGGGGCGCCCGAAGTTCTCCGT GCCAAACGATAATGATTTAGTGACGTCTCTGTTAGACATGGGGGGAATCA CGAAGGAGATGGCCAAGAACCGAGATGTGGTCAGTCAGTTCCTCCCCGCG TTGAAGGGAGATTACCTAGCGGTGGATAAGTATGTGTACCACGAAGCGGA GCCCTTGGCCTGCCCGATTTTAGCCTTGGGCAGCGACCAAGACATGCGAG TCCCCCAGCAAGAGACGGCCGAATGGGCTCGCTTCACGGCGGGGGAGTTT GAGTCACGCATTTTCCCGGGCGGACATTTTTTCCTCAAGCCGTTGGAGAA GGATGTAATTGCGTATATTTCTTCAGTTATTTTCAAGGACATGACGGGCC CGGGGGCCATGGCATTGCCGGGATTCATCCTCTTTGATCCCAATAAGGTT GAGTAAGAACGGGATGAGAAGTCGTAAGCGACAAGAAAAGTTGAGAATTA CTGATATGGAACAACAATCAAATGTGCCTGTACATAAGGATTATGTACCC CGAAGTTGAGAATAAAATATACGTGGCGGGAATACCTTTTAGATTCAGTG TTCACGTGTGTGTTTCTGGGAGTGGTTGTATTGAAGGTAGTGCGGTGTAT GGGAGACTTGAATAAGAGAAATGAAAGGAAATACAGTAATTTCTTGTCTG TTGTGTTTGGTCCGTGCGATGG back to topprotein sequence of NO03G03980.1 >NO03G03980.1-protein ID=NO03G03980.1-protein|Name=NO03G03980.1|organism=Nannochloropsis oceanica|type=polypeptide|length=359bp MGVSGSKGCCMCCVPDKALMACGPAVPIAKELHSESAQVAPSGHGVHHKG LGEAIQARTRCISACAVRCIHDHLPGHRHDHMKAPAVMREEEAKKWLLVK RKDFARVRMVCFPYAGGNSNFYKTWDFKETEMVLVELPGRNARYNEKAMT DVYSIAKKIASALDAVGYLKSKIPLVFFGHSFGAIVSTLVAQVLRNQYNY TPKHLIVSGCVPLHMRAGRPKFSVPNDNDLVTSLLDMGGITKEMAKNRDV VSQFLPALKGDYLAVDKYVYHEAEPLACPILALGSDQDMRVPQQETAEWA RFTAGEFESRIFPGGHFFLKPLEKDVIAYISSVIFKDMTGPGAMALPGFI LFDPNKVE* back to topmRNA from alignment at chr3:1161828..1163874+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO03G03980.1 ID=NO03G03980.1|Name=NO03G03980.1|organism=Nannochloropsis oceanica|type=mRNA|length=2047bp|location=Sequence derived from alignment at chr3:1161828..1163874+ (Nannochloropsis oceanica) CGGGCGGAACTCCGCTGTTCCACAGTAAACTGTGAAGTTAACTGTTTATC
TGTTTACTACTTTCTTTACTCCCTTTCTTCTTAAACAAATACGCACACAA
CAAGGACAACAACAACAACGAAAAAACAAGGCATACAATAGATTTAGAAG
AGGCCAATCTAGCTGAAAGCTAGTGCTGGCGTGTATGCGGGCTTCGTCGT
GCACACGCACTCGATGGCCCATCCCTCCAATATTTCTTGCATTGCCGCAA
CGCACACTCTCATCGTACTCAACCACGACCGCGCACACTACCACTACATT
ATAATAGGGAGGCCCTAGGGGAAGAGTCCTGTGCAGCCATCGTCGTTTAA
GTCGTCACCCTTCATTCTATTTCTTGTAAATGGGTAAGTGAAAGGGCGCG
CTGGGTCGCGGTAGGAGAAGAGAGACGAGTGAGAAGATAAGTGAAGATCG
GTCTAGAGACAATGCGAACTCAATATAGAACGACGAAGCTAGTCGTATGC
CCAAGTCCTGTCTTAGGGGATGACCATGTGTGCATGTCTTCCTTTTCCAG
TACCACTTGCCTGGCCGACCTCCCATTCACGGAGGGCATCGCTACATTCC
CACACATTTTTCCGCACATCCCATCATCTATCCCTACAGTCTTTAAAAAA
AAACATAACCTTTCTTCCAACCATTACTCCAATACCTTGCCCTATCCAAC
CCACATAGGTGTCTCCGGCTCCAAGGGCTGCTGCATGTGCTGTGTCCCCG
ACAAGGCCCTCATGGCCTGTGGACCTGCCGTGCCCATTGCAAAGGAGCTG
CACAGTGAATCTGCGCAGGTCGCGCCCTCAGGCCATGGGGTCCATCATAA
GGGGTTGGGCGAGGCAATCCAGGCCCGGACACGTTGTATATCTGCGTGTG
CTGTCCGCTGCATCCACGACCATTTGCCAGGCCATCGACACGACCATATG
AAGGCGCCAGCGGTGATGAGGGAGGAAGAGGCGAAAAAGTGGCTGTTAGT
CAAGCGCAAGGATTTTGCCCGGGTGCGTATGGTTTGTTTTCCGTATGCAG
GCGGGAACTCTAATTTCTACAAGACGTGGGATTTCAAGGAGACGGAGATG
GTATTGGTGGAGCTGCCGGGGCGTAATGCCCGGTACAATGAAAAGGCCAT
GACAGACGTGTACTCAATCGCGAAGAAGATTGCTTCGGCATTGGATGCGG
TCGGGTATTTGAAGTCGAAGATTCCGTTGGTGTTTTTCGGTCACAGCTTT
GGTGCGATCGTGTCGACGTTGGTGGCGCAAGTGTTGCGGAATCAGTATAA
TTATACACCCAAGCATTTGATTGTCTCGGGTTGTGTACCCTTGCATATGA
GGGCGGGGCGCCCGAAGTTCTCCGTGCCAAACGATAATGATTTAGTGACG
TCTCTGTTAGACATGGGGGGAATCACGAAGGAGATGGCCAAGAACCGAGA
TGTGGTCAGTCAGTTCCTCCCCGCGTTGAAGGGAGATTACCTAGCGGTGG
ATAAGTATGTGTACCACGAAGCGGAGCCCTTGGCCTGCCCGATTTTAGCC
TTGGGCAGCGACCAAGACATGCGAGTCCCCCAGCAAGAGACGGCCGAATG
GGCTCGCTTCACGGCGGGGGAGTTTGAGTCACGCATTTTCCCGGGCGGAC
ATTTTTTCCTCAAGCCGTTGGAGAAGGATGTAATTGCGTATATTTCTTCA
GTTATTTTCAAGGACATGACGGGCCCGGGGGCCATGGCATTGCCGGGATT
CATCCTCTTTGATCCCAATAAGGTTGAGTAAGAACGGGATGAGAAGTCGT
AAGCGACAAGAAAAGTTGAGAATTACTGATATGGAACAACAATCAAATGT
GCCTGTACATAAGGATTATGTACCCCGAAGTTGAGAATAAAATATACGTG
GCGGGAATACCTTTTAGATTCAGTGTTCACGTGTGTGTTTCTGGGAGTGG
TTGTATTGAAGGTAGTGCGGTGTATGGGAGACTTGAATAAGAGAAATGAA
AGGAAATACAGTAATTTCTTGTCTGTTGTGTTTGGTCCGTGCGATGG back to topCoding sequence (CDS) from alignment at chr3:1161828..1163874+ >NO03G03980.1 ID=NO03G03980.1|Name=NO03G03980.1|organism=Nannochloropsis oceanica|type=CDS|length=1077bp|location=Sequence derived from alignment at chr3:1161828..1163874+ (Nannochloropsis oceanica) ATGGGTGTCTCCGGCTCCAAGGGCTGCTGCATGTGCTGTGTCCCCGACAA GGCCCTCATGGCCTGTGGACCTGCCGTGCCCATTGCAAAGGAGCTGCACA GTGAATCTGCGCAGGTCGCGCCCTCAGGCCATGGGGTCCATCATAAGGGG TTGGGCGAGGCAATCCAGGCCCGGACACGTTGTATATCTGCGTGTGCTGT CCGCTGCATCCACGACCATTTGCCAGGCCATCGACACGACCATATGAAGG CGCCAGCGGTGATGAGGGAGGAAGAGGCGAAAAAGTGGCTGTTAGTCAAG CGCAAGGATTTTGCCCGGGTGCGTATGGTTTGTTTTCCGTATGCAGGCGG GAACTCTAATTTCTACAAGACGTGGGATTTCAAGGAGACGGAGATGGTAT TGGTGGAGCTGCCGGGGCGTAATGCCCGGTACAATGAAAAGGCCATGACA GACGTGTACTCAATCGCGAAGAAGATTGCTTCGGCATTGGATGCGGTCGG GTATTTGAAGTCGAAGATTCCGTTGGTGTTTTTCGGTCACAGCTTTGGTG CGATCGTGTCGACGTTGGTGGCGCAAGTGTTGCGGAATCAGTATAATTAT ACACCCAAGCATTTGATTGTCTCGGGTTGTGTACCCTTGCATATGAGGGC GGGGCGCCCGAAGTTCTCCGTGCCAAACGATAATGATTTAGTGACGTCTC TGTTAGACATGGGGGGAATCACGAAGGAGATGGCCAAGAACCGAGATGTG GTCAGTCAGTTCCTCCCCGCGTTGAAGGGAGATTACCTAGCGGTGGATAA GTATGTGTACCACGAAGCGGAGCCCTTGGCCTGCCCGATTTTAGCCTTGG GCAGCGACCAAGACATGCGAGTCCCCCAGCAAGAGACGGCCGAATGGGCT CGCTTCACGGCGGGGGAGTTTGAGTCACGCATTTTCCCGGGCGGACATTT TTTCCTCAAGCCGTTGGAGAAGGATGTAATTGCGTATATTTCTTCAGTTA TTTTCAAGGACATGACGGGCCCGGGGGCCATGGCATTGCCGGGATTCATC CTCTTTGATCCCAATAAGGTTGAGTAA back to top
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