NO03G03970.1, NO03G03970.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO03G03970.1
Unique NameNO03G03970.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1532
Alignment locationchr3:1159825..1161356 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:1159825..1161356 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO03G03970.1 vs.
Match: EWM29795.1 (rae1-like protein [Nannochloropsis gaditana])

HSP 1 Score: 707.2 bits (1824), Expect = 2.700e-200
Identity = 334/375 (89.07%), Postives = 349/375 (93.07%), Query Frame = 0 
Query:    1 MSWGGLGGQTLGSTQQPAASSDLKLPHTQADGISSLAFAPSDTLNLVAAGSWDNSVRLWNLQEQASQGLGMPSQ-PNIMATPIGEIKHQAAVLDVCMSAEGNVFSGGCDNKAMMWTPNPAGGPPQTQQIAEHSAPIKCIAHVPQLPCVITGSWDQTVKFWDMRSPSPAHQLQLPHKVLTMDCRYPFLCVGTSNKEVYVYNLAGGIRPHKPGGAPIQSQIKAFQTRTLSMFPDCSGFAIGNIEGRVAIHYIDHRQGDKTVEFAYKCHRVDAKESPNKTAEIHAVNAISFHNRYGTFATAGADGSYAFWDKDKRQRLKPPTRMNAPISCASFNQRGDLYGYAVSYDWSKGSEHYNKQGPNDIYIHMVKEDEIKPKKK 375
            MSWGGL  QT+GSTQ P AS DLKLP TQADGISSLAFAPS+TLNLVAAGSWDNSVRLWNLQEQASQGLGM SQ P IMATP+GEIKHQ  VLDVCMS EGNVFS GCDNKAMMWTPNPAGG PQTQQIAEHSAPIKCIAHVPQLPC++TGSWDQTVKFWDMR  SPAHQ QLPHK+  MDCRYP+LCV TSNKEVYVYNLAGGIRP KPGGAPIQSQIKAFQTR LSMFPDCSGFAIGNIEGRVAIHYIDHRQGDKTVEFAYKCHR+DAK++PNKTAEI+AVN+ISFHNRYGTFATAGADGSYAFWDKDKRQRLK PTR NAPISCASFN RGDLYGYAVSYDWSKGSEHYNKQ PND++IH+VKEDEIKPKKK
Sbjct:   45 MSWGGLSSQTVGSTQ-PVASPDLKLPDTQADGISSLAFAPSETLNLVAAGSWDNSVRLWNLQEQASQGLGMASQGPGIMATPVGEIKHQGPVLDVCMSPEGNVFSAGCDNKAMMWTPNPAGGAPQTQQIAEHSAPIKCIAHVPQLPCIVTGSWDQTVKFWDMRQSSPAHQFQLPHKITAMDCRYPYLCVATSNKEVYVYNLAGGIRPLKPGGAPIQSQIKAFQTRCLSMFPDCSGFAIGNIEGRVAIHYIDHRQGDKTVEFAYKCHRIDAKDTPNKTAEIYAVNSISFHNRYGTFATAGADGSYAFWDKDKRQRLKAPTRFNAPISCASFNHRGDLYGYAVSYDWSKGSEHYNKQQPNDVFIHVVKEDEIKPKKK 418
The following BLAST results are available for this feature:
BLAST of NO03G03970.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29795.12.700e-20089.07rae1-like protein [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO03G03970NO03G03970Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO03G03970.1NO03G03970.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO03G03970.1.cds1NO03G03970.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO03G03970.1 ID=NO03G03970.1|Name=NO03G03970.1|organism=Nannochloropsis oceanica|type=mRNA|length=1532bp
CGGTGATGCGTAAACATGGTGTGAAGTGCTTGAGATCACGAGGAACATGG
CAAAACCGACAAGTCACAGTGAAAATCATCGACGATCGCTCGAGGCATAG
GACTCTTCATCGGATGTGACCTACCACTTGCCACCTCTCAATACTCCAAA
CTCCGCGAATGTACCCTACTACCACATGGTCGGGCATCCTTCATTGTAGT
TCTTGCCCTGCGGTCGGTGGGGCGCGACCTGAAATTTCCCGTCTCACGCA
ACACCATTATTCCCGTCACAGGCCCCTCCTTCTTTACGTCCTCCTTATTG
CGCTCGCGGCCATCACCGACCACTTCCATCGTCCATCTACAGCATCATCA
TGTCGTGGGGCGGTTTGGGGGGACAGACACTGGGGAGCACGCAGCAGCCT
GCCGCGTCATCAGACCTAAAGCTCCCACACACGCAAGCTGATGGCATCTC
GTCCCTGGCCTTTGCGCCGTCCGACACCCTGAACCTGGTAGCGGCAGGAT
CATGGGATAATTCCGTCCGCCTCTGGAATTTGCAAGAACAAGCCTCTCAA
GGTTTGGGCATGCCATCACAGCCTAATATCATGGCTACACCCATCGGTGA
GATAAAGCACCAAGCTGCTGTACTGGACGTATGCATGTCAGCCGAGGGCA
ACGTCTTTTCCGGAGGCTGCGACAACAAGGCCATGATGTGGACTCCTAAC
CCCGCCGGCGGCCCACCACAAACCCAGCAAATTGCCGAACACAGCGCACC
GATCAAATGCATTGCCCACGTGCCCCAGCTCCCCTGTGTCATCACAGGTT
CCTGGGACCAGACCGTCAAGTTCTGGGATATGAGGTCACCCTCTCCCGCG
CATCAGCTCCAGCTTCCTCACAAAGTTCTCACGATGGACTGCCGCTACCC
TTTTTTATGCGTGGGTACATCGAACAAAGAAGTCTATGTCTATAATCTGG
CCGGGGGCATTCGCCCGCATAAGCCAGGAGGGGCGCCTATTCAGTCGCAG
ATCAAGGCGTTCCAGACCCGGACATTGAGCATGTTTCCTGATTGCTCGGG
ATTCGCCATTGGGAATATCGAGGGACGTGTCGCAATCCATTACATTGATC
ATCGTCAGGGGGATAAAACGGTGGAGTTTGCGTACAAATGCCACAGGGTG
GACGCAAAGGAAAGTCCGAATAAGACCGCGGAGATCCACGCCGTCAATGC
CATTTCGTTCCACAATAGATACGGTACATTTGCCACAGCGGGCGCAGATG
GTTCGTACGCGTTCTGGGATAAGGATAAGCGGCAGCGGCTGAAGCCACCG
ACGAGGATGAATGCCCCCATTTCGTGTGCGTCGTTTAATCAACGAGGGGA
CTTGTATGGGTATGCCGTGAGTTACGATTGGAGTAAGGGTTCAGAGCATT
ACAATAAGCAGGGGCCCAATGATATTTATATTCACATGGTGAAGGAAGAT
GAGATTAAACCCAAGAAGAAGTAGAGTCGGTGGGGTTGGAGGGTGGTGGT
TAAAAAGCAACAGCGCTTGTATAAATACTGAC
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protein sequence of NO03G03970.1

>NO03G03970.1-protein ID=NO03G03970.1-protein|Name=NO03G03970.1|organism=Nannochloropsis oceanica|type=polypeptide|length=375bp
MSWGGLGGQTLGSTQQPAASSDLKLPHTQADGISSLAFAPSDTLNLVAAG
SWDNSVRLWNLQEQASQGLGMPSQPNIMATPIGEIKHQAAVLDVCMSAEG
NVFSGGCDNKAMMWTPNPAGGPPQTQQIAEHSAPIKCIAHVPQLPCVITG
SWDQTVKFWDMRSPSPAHQLQLPHKVLTMDCRYPFLCVGTSNKEVYVYNL
AGGIRPHKPGGAPIQSQIKAFQTRTLSMFPDCSGFAIGNIEGRVAIHYID
HRQGDKTVEFAYKCHRVDAKESPNKTAEIHAVNAISFHNRYGTFATAGAD
GSYAFWDKDKRQRLKPPTRMNAPISCASFNQRGDLYGYAVSYDWSKGSEH
YNKQGPNDIYIHMVKEDEIKPKKK*
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mRNA from alignment at chr3:1159825..1161356+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO03G03970.1 ID=NO03G03970.1|Name=NO03G03970.1|organism=Nannochloropsis oceanica|type=mRNA|length=1532bp|location=Sequence derived from alignment at chr3:1159825..1161356+ (Nannochloropsis oceanica)
CGGTGATGCGTAAACATGGTGTGAAGTGCTTGAGATCACGAGGAACATGG
CAAAACCGACAAGTCACAGTGAAAATCATCGACGATCGCTCGAGGCATAG
GACTCTTCATCGGATGTGACCTACCACTTGCCACCTCTCAATACTCCAAA
CTCCGCGAATGTACCCTACTACCACATGGTCGGGCATCCTTCATTGTAGT
TCTTGCCCTGCGGTCGGTGGGGCGCGACCTGAAATTTCCCGTCTCACGCA
ACACCATTATTCCCGTCACAGGCCCCTCCTTCTTTACGTCCTCCTTATTG
CGCTCGCGGCCATCACCGACCACTTCCATCGTCCATCTACAGCATCATCA
TGTCGTGGGGCGGTTTGGGGGGACAGACACTGGGGAGCACGCAGCAGCCT
GCCGCGTCATCAGACCTAAAGCTCCCACACACGCAAGCTGATGGCATCTC
GTCCCTGGCCTTTGCGCCGTCCGACACCCTGAACCTGGTAGCGGCAGGAT
CATGGGATAATTCCGTCCGCCTCTGGAATTTGCAAGAACAAGCCTCTCAA
GGTTTGGGCATGCCATCACAGCCTAATATCATGGCTACACCCATCGGTGA
GATAAAGCACCAAGCTGCTGTACTGGACGTATGCATGTCAGCCGAGGGCA
ACGTCTTTTCCGGAGGCTGCGACAACAAGGCCATGATGTGGACTCCTAAC
CCCGCCGGCGGCCCACCACAAACCCAGCAAATTGCCGAACACAGCGCACC
GATCAAATGCATTGCCCACGTGCCCCAGCTCCCCTGTGTCATCACAGGTT
CCTGGGACCAGACCGTCAAGTTCTGGGATATGAGGTCACCCTCTCCCGCG
CATCAGCTCCAGCTTCCTCACAAAGTTCTCACGATGGACTGCCGCTACCC
TTTTTTATGCGTGGGTACATCGAACAAAGAAGTCTATGTCTATAATCTGG
CCGGGGGCATTCGCCCGCATAAGCCAGGAGGGGCGCCTATTCAGTCGCAG
ATCAAGGCGTTCCAGACCCGGACATTGAGCATGTTTCCTGATTGCTCGGG
ATTCGCCATTGGGAATATCGAGGGACGTGTCGCAATCCATTACATTGATC
ATCGTCAGGGGGATAAAACGGTGGAGTTTGCGTACAAATGCCACAGGGTG
GACGCAAAGGAAAGTCCGAATAAGACCGCGGAGATCCACGCCGTCAATGC
CATTTCGTTCCACAATAGATACGGTACATTTGCCACAGCGGGCGCAGATG
GTTCGTACGCGTTCTGGGATAAGGATAAGCGGCAGCGGCTGAAGCCACCG
ACGAGGATGAATGCCCCCATTTCGTGTGCGTCGTTTAATCAACGAGGGGA
CTTGTATGGGTATGCCGTGAGTTACGATTGGAGTAAGGGTTCAGAGCATT
ACAATAAGCAGGGGCCCAATGATATTTATATTCACATGGTGAAGGAAGAT
GAGATTAAACCCAAGAAGAAGTAGAGTCGGTGGGGTTGGAGGGTGGTGGT
TAAAAAGCAACAGCGCTTGTATAAATACTGAC
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Coding sequence (CDS) from alignment at chr3:1159825..1161356+

>NO03G03970.1 ID=NO03G03970.1|Name=NO03G03970.1|organism=Nannochloropsis oceanica|type=CDS|length=1125bp|location=Sequence derived from alignment at chr3:1159825..1161356+ (Nannochloropsis oceanica)
ATGTCGTGGGGCGGTTTGGGGGGACAGACACTGGGGAGCACGCAGCAGCC
TGCCGCGTCATCAGACCTAAAGCTCCCACACACGCAAGCTGATGGCATCT
CGTCCCTGGCCTTTGCGCCGTCCGACACCCTGAACCTGGTAGCGGCAGGA
TCATGGGATAATTCCGTCCGCCTCTGGAATTTGCAAGAACAAGCCTCTCA
AGGTTTGGGCATGCCATCACAGCCTAATATCATGGCTACACCCATCGGTG
AGATAAAGCACCAAGCTGCTGTACTGGACGTATGCATGTCAGCCGAGGGC
AACGTCTTTTCCGGAGGCTGCGACAACAAGGCCATGATGTGGACTCCTAA
CCCCGCCGGCGGCCCACCACAAACCCAGCAAATTGCCGAACACAGCGCAC
CGATCAAATGCATTGCCCACGTGCCCCAGCTCCCCTGTGTCATCACAGGT
TCCTGGGACCAGACCGTCAAGTTCTGGGATATGAGGTCACCCTCTCCCGC
GCATCAGCTCCAGCTTCCTCACAAAGTTCTCACGATGGACTGCCGCTACC
CTTTTTTATGCGTGGGTACATCGAACAAAGAAGTCTATGTCTATAATCTG
GCCGGGGGCATTCGCCCGCATAAGCCAGGAGGGGCGCCTATTCAGTCGCA
GATCAAGGCGTTCCAGACCCGGACATTGAGCATGTTTCCTGATTGCTCGG
GATTCGCCATTGGGAATATCGAGGGACGTGTCGCAATCCATTACATTGAT
CATCGTCAGGGGGATAAAACGGTGGAGTTTGCGTACAAATGCCACAGGGT
GGACGCAAAGGAAAGTCCGAATAAGACCGCGGAGATCCACGCCGTCAATG
CCATTTCGTTCCACAATAGATACGGTACATTTGCCACAGCGGGCGCAGAT
GGTTCGTACGCGTTCTGGGATAAGGATAAGCGGCAGCGGCTGAAGCCACC
GACGAGGATGAATGCCCCCATTTCGTGTGCGTCGTTTAATCAACGAGGGG
ACTTGTATGGGTATGCCGTGAGTTACGATTGGAGTAAGGGTTCAGAGCAT
TACAATAAGCAGGGGCCCAATGATATTTATATTCACATGGTGAAGGAAGA
TGAGATTAAACCCAAGAAGAAGTAG
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Synonyms
Publications