NO03G03940.1, NO03G03940.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO03G03940.1
Unique NameNO03G03940.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length402
Alignment locationchr3:1153028..1153580 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:1153028..1153580 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO03G03940.1 vs.
Match: EWM29846.1 (ubiquitin-conjugating enzyme [Nannochloropsis gaditana])

HSP 1 Score: 192.6 bits (488), Expect = 7.900e-46
Identity = 94/150 (62.67%), Postives = 113/150 (75.33%), Query Frame = 0
Query:    3 MGPLKRLRKELQALERAPDADIDLQPQQNDIRRWQAVIRGPGETPFEGGTFQLLI--------------------------ETGEICLDILKKEWSPAWSLQAACRAVMALLAAPDADSPLNCDAGNMVRAGDMRAFNSLAKMYTAEYAS 127
            MG LKRLRKELQA+E+  D D++L PQ+++IR W A+I+GPGETPFEGGTF+L I                          ETGEICLDILKKEWSPAWSLQ ACRAV+ALLAAPDA+SPLNCDAGNM+RAGD+RA+N++A++YT EY S
Sbjct:    1 MGSLKRLRKELQAIEKTSDTDMELWPQEDNIRLWHAIIQGPGETPFEGGTFELRIEVGTDYPIRPPVIRFVTHIFHPNIHFETGEICLDILKKEWSPAWSLQTACRAVVALLAAPDAESPLNCDAGNMLRAGDVRAYNAMARLYTVEYGS 150          
The following BLAST results are available for this feature:
BLAST of NO03G03940.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29846.17.900e-4662.67ubiquitin-conjugating enzyme [Nannochloropsis gadi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO03G03940NO03G03940Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO03G03940.1NO03G03940.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO03G03940.1.cds1NO03G03940.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO03G03940.1.cds2NO03G03940.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO03G03940.1.cds3NO03G03940.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO03G03940.1 ID=NO03G03940.1|Name=NO03G03940.1|organism=Nannochloropsis oceanica|type=mRNA|length=402bp
ATGGCCATGGGACCGCTCAAACGACTGCGCAAGGAGCTGCAAGCCTTGGA
ACGAGCCCCGGACGCCGACATCGACCTCCAGCCGCAGCAAAACGACATAC
GGAGGTGGCAGGCCGTAATTCGTGGCCCAGGCGAGACCCCCTTTGAGGGA
GGGACATTTCAGCTCCTCATCGAGACGGGTGAGATTTGTTTGGACATTTT
GAAGAAGGAGTGGTCGCCCGCATGGAGTCTGCAGGCGGCCTGTCGGGCCG
TTATGGCCTTGTTGGCCGCGCCGGATGCGGACAGCCCTTTGAACTGTGAC
GCGGGTAACATGGTCAGGGCGGGGGACATGCGGGCGTTTAACTCGTTGGC
AAAGATGTACACTGCGGAGTATGCCTCAGTGGATTTGTCGTTATCGTCGT
AG
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protein sequence of NO03G03940.1

>NO03G03940.1-protein ID=NO03G03940.1-protein|Name=NO03G03940.1|organism=Nannochloropsis oceanica|type=polypeptide|length=134bp
MAMGPLKRLRKELQALERAPDADIDLQPQQNDIRRWQAVIRGPGETPFEG
GTFQLLIETGEICLDILKKEWSPAWSLQAACRAVMALLAAPDADSPLNCD
AGNMVRAGDMRAFNSLAKMYTAEYASVDLSLSS*
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mRNA from alignment at chr3:1153028..1153580+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO03G03940.1 ID=NO03G03940.1|Name=NO03G03940.1|organism=Nannochloropsis oceanica|type=mRNA|length=553bp|location=Sequence derived from alignment at chr3:1153028..1153580+ (Nannochloropsis oceanica)
ATGGCCATGGGACCGCTCAAACGACTGCGCAAGGTAAAGTTTTCCACCCT TCACAAAGCAAAGCAGCCCTTCATCTCTCTGCACCGATCACTCTTCCACA ACACAGGAGCTGCAAGCCTTGGAACGAGCCCCGGACGCCGACATCGACCT CCAGCCGCAGCAAAACGACATACGGAGGTGGCAGGCCGTAATTCGTGGCC CAGGCGAGACCCCCTTTGAGGGAGGGACATTTCAGCTCCTCATCGAGGTA GGACCAGAATACCCCCTCCGCCCTCCGCTCATCCATTTCATCACACGGGT CTTCCACCCCAACATTCATTTTGAGACGGGTGAGATTTGTTTGGACATTT TGAAGAAGGAGTGGTCGCCCGCATGGAGTCTGCAGGCGGCCTGTCGGGCC GTTATGGCCTTGTTGGCCGCGCCGGATGCGGACAGCCCTTTGAACTGTGA CGCGGGTAACATGGTCAGGGCGGGGGACATGCGGGCGTTTAACTCGTTGG CAAAGATGTACACTGCGGAGTATGCCTCAGTGGATTTGTCGTTATCGTCG TAG
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Coding sequence (CDS) from alignment at chr3:1153028..1153580+

>NO03G03940.1 ID=NO03G03940.1|Name=NO03G03940.1|organism=Nannochloropsis oceanica|type=CDS|length=402bp|location=Sequence derived from alignment at chr3:1153028..1153580+ (Nannochloropsis oceanica)
ATGGCCATGGGACCGCTCAAACGACTGCGCAAGGAGCTGCAAGCCTTGGA
ACGAGCCCCGGACGCCGACATCGACCTCCAGCCGCAGCAAAACGACATAC
GGAGGTGGCAGGCCGTAATTCGTGGCCCAGGCGAGACCCCCTTTGAGGGA
GGGACATTTCAGCTCCTCATCGAGACGGGTGAGATTTGTTTGGACATTTT
GAAGAAGGAGTGGTCGCCCGCATGGAGTCTGCAGGCGGCCTGTCGGGCCG
TTATGGCCTTGTTGGCCGCGCCGGATGCGGACAGCCCTTTGAACTGTGAC
GCGGGTAACATGGTCAGGGCGGGGGACATGCGGGCGTTTAACTCGTTGGC
AAAGATGTACACTGCGGAGTATGCCTCAGTGGATTTGTCGTTATCGTCGT
AG
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Synonyms
Publications