NO03G03910.1, NO03G03910.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO03G03910.1
Unique NameNO03G03910.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1476
Alignment locationchr3:1146113..1147588 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:1146113..1147588 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO03G03910.1 vs.
Match: XP_005855203.1 (lysophospholipase-like 1, partial [Nannochloropsis gaditana CCMP526]; EKU21158.1 lysophospholipase-like 1, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 341.7 bits (875), Expect = 3.000e-90
Identity = 185/314 (58.92%), Postives = 222/314 (70.70%), Query Frame = 0 
Query:    5 STKIRASSSVST-HSADRPMPPIEKGALIFLHGSGDEGANMEYVLRATGFTQRMKTLGLSVHCPTALPRPYSFAGGAVSTVWFDRTNLHISAPEDKAGMDASFAVLSDLMEKLETEHGVPSSHIYLGGFSMGGGMALAALTRQMKPLAGVFAIGSFLAADSDVYKQQQQQRWRLPRLLLAHGQADMVVPYSWGEATAKKLYALSRAQKKEDEGEEMGRDDLVAFYRFPHLQHEFDRRVLSVLARWIESGAKIFPDVSKEQADGSVIRVPLGQNSSLTTARCPGGAQREAAAGTVSTSKGTSGVCSPCEVQMTLE 318
            S  +RA  + S+ +S+D  M   EKGALIFLHGSGD+G NM Y LRATGFTQRM  LG+SVHCPTA PR Y++A GA+S VWFDR +L ISAPEDKAGMD SFA L  L+EKLE E G+ SS IYLGGFSMGGGMALA L R+ K LAG+FAIGSFLA+DS VY+  QQ+   +PR+LLAHGQ+D VVPY+WGEATA++LYA S+     D+ +  G +D VAFY FP LQH FD RVLSVLARWIE+GA+ FPDV++      + R  L   SSL  A  P  A   + A   + ++  S      EV MTLE
Sbjct:   27 SQPVRAKPTASSANSSDHRMSHTEKGALIFLHGSGDDGGNMAYALRATGFTQRMNALGISVHCPTAKPRRYTYASGALSNVWFDRVDLDISAPEDKAGMDDSFAELMSLIEKLENEQGISSSRIYLGGFSMGGGMALATLARETKVLAGIFAIGSFLASDSAVYQSPQQR--TMPRILLAHGQSDAVVPYAWGEATARRLYACSQENFGGDKEKGHGEEDRVAFYGFPRLQHTFDERVLSVLARWIETGAQKFPDVAEGCMQEEMTRTSL---SSLPGAPSPSSADLPSIA--TAAAQSASATFPSDEVHMTLE 333
The following BLAST results are available for this feature:
BLAST of NO03G03910.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005855203.13.000e-9058.92lysophospholipase-like 1, partial [Nannochloropsis... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO03G03910NO03G03910Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO03G03910.1NO03G03910.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO03G03910.1.cds1NO03G03910.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO03G03910.1 ID=NO03G03910.1|Name=NO03G03910.1|organism=Nannochloropsis oceanica|type=mRNA|length=1476bp
ACAGGAAATATAGGTCCCCCGGTCGCTTTCCGTCGCCCCGCCACGGCCGC
CGTCGTCTCTGCCGCGGCTTTGTCCCTCTCCACCTCCCCTTGCTGGACGA
TATTTACAGCAAGGGCCATGGCCAGCGGTAGCACCAAGATCAGGGCTAGC
AGCAGTGTCAGCACTCACAGTGCCGATCGCCCCATGCCCCCTATCGAGAA
GGGGGCGCTCATCTTTCTTCATGGGAGCGGGGATGAAGGGGCCAACATGG
AGTACGTCTTACGGGCTACCGGCTTTACGCAGCGCATGAAAACCTTGGGA
CTGAGCGTGCATTGCCCTACTGCGCTGCCGCGCCCATACTCCTTTGCCGG
TGGTGCGGTCAGCACCGTGTGGTTTGATCGCACCAACCTCCACATTTCGG
CGCCCGAGGACAAGGCAGGCATGGACGCGTCCTTTGCGGTCTTGAGTGAT
CTGATGGAGAAGCTAGAGACGGAGCACGGCGTCCCATCGTCACACATCTA
CTTGGGGGGCTTCTCAATGGGTGGAGGCATGGCGTTGGCTGCCTTGACTC
GACAGATGAAGCCCCTGGCAGGCGTCTTTGCGATTGGTAGTTTCTTGGCA
GCGGATTCCGATGTATATAAGCAACAGCAGCAGCAGCGGTGGCGTTTGCC
CCGCCTTTTGCTGGCGCATGGACAGGCAGACATGGTGGTGCCGTATTCCT
GGGGTGAAGCGACGGCAAAGAAGCTGTACGCGCTCAGTCGCGCGCAAAAA
AAAGAGGACGAGGGAGAGGAGATGGGGAGAGACGACCTAGTGGCCTTTTA
TAGATTTCCTCATTTGCAGCATGAGTTTGACCGGCGAGTGCTATCCGTCT
TGGCTCGATGGATCGAGAGCGGGGCGAAGATTTTCCCGGATGTATCGAAG
GAGCAAGCGGATGGTAGCGTGATTCGCGTGCCTTTGGGCCAAAATTCATC
ACTCACGACAGCAAGATGTCCAGGAGGAGCACAAAGAGAAGCAGCAGCGG
GAACCGTGTCGACAAGCAAGGGTACAAGTGGCGTTTGCTCTCCGTGCGAG
GTTCAAATGACGCTGGAAGTGGAAGAAGAAGTGGCAGCAGACTCCTCTTT
CCCCTCCTCCTCCTCTTCCTCCACCCCCTCCTCCCCCCTCCCTCCTCCTT
CTCCTCCCTCTCCTCCGGTAGAGTGCGTCGGCATCGTGCCACGTTCCGGG
TACCTAGAACCAAGGTCCAAGACTTTCTTACCCGTCCAGTAGCCGCACGA
GGAGCATACTTCTCATTCATGGCAGGGAAGGAACCAGATACTTTTTGTTT
GGTTTTCGAAAGCCCCTGCCCGGAGGAGACGGCAGCGGCGGTGTTGGAGA
AAGTGAGAACCCGGTTGCTTGATCCTCATGCACCGGACGGACTGAGTGCG
TGCACTCCTTCGTGAGTAGGATACAACTGAAACAGAAAGGATTTAGATGC
ATAGAGAAGTTGATGCCATCGCTAGG
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protein sequence of NO03G03910.1

>NO03G03910.1-protein ID=NO03G03910.1-protein|Name=NO03G03910.1|organism=Nannochloropsis oceanica|type=polypeptide|length=375bp
MASGSTKIRASSSVSTHSADRPMPPIEKGALIFLHGSGDEGANMEYVLRA
TGFTQRMKTLGLSVHCPTALPRPYSFAGGAVSTVWFDRTNLHISAPEDKA
GMDASFAVLSDLMEKLETEHGVPSSHIYLGGFSMGGGMALAALTRQMKPL
AGVFAIGSFLAADSDVYKQQQQQRWRLPRLLLAHGQADMVVPYSWGEATA
KKLYALSRAQKKEDEGEEMGRDDLVAFYRFPHLQHEFDRRVLSVLARWIE
SGAKIFPDVSKEQADGSVIRVPLGQNSSLTTARCPGGAQREAAAGTVSTS
KGTSGVCSPCEVQMTLEVEEEVAADSSFPSSSSSSTPSSPLPPPSPPSPP
VECVGIVPRSGYLEPRSKTFLPVQ*
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mRNA from alignment at chr3:1146113..1147588-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO03G03910.1 ID=NO03G03910.1|Name=NO03G03910.1|organism=Nannochloropsis oceanica|type=mRNA|length=1476bp|location=Sequence derived from alignment at chr3:1146113..1147588- (Nannochloropsis oceanica)
ACAGGAAATATAGGTCCCCCGGTCGCTTTCCGTCGCCCCGCCACGGCCGC
CGTCGTCTCTGCCGCGGCTTTGTCCCTCTCCACCTCCCCTTGCTGGACGA
TATTTACAGCAAGGGCCATGGCCAGCGGTAGCACCAAGATCAGGGCTAGC
AGCAGTGTCAGCACTCACAGTGCCGATCGCCCCATGCCCCCTATCGAGAA
GGGGGCGCTCATCTTTCTTCATGGGAGCGGGGATGAAGGGGCCAACATGG
AGTACGTCTTACGGGCTACCGGCTTTACGCAGCGCATGAAAACCTTGGGA
CTGAGCGTGCATTGCCCTACTGCGCTGCCGCGCCCATACTCCTTTGCCGG
TGGTGCGGTCAGCACCGTGTGGTTTGATCGCACCAACCTCCACATTTCGG
CGCCCGAGGACAAGGCAGGCATGGACGCGTCCTTTGCGGTCTTGAGTGAT
CTGATGGAGAAGCTAGAGACGGAGCACGGCGTCCCATCGTCACACATCTA
CTTGGGGGGCTTCTCAATGGGTGGAGGCATGGCGTTGGCTGCCTTGACTC
GACAGATGAAGCCCCTGGCAGGCGTCTTTGCGATTGGTAGTTTCTTGGCA
GCGGATTCCGATGTATATAAGCAACAGCAGCAGCAGCGGTGGCGTTTGCC
CCGCCTTTTGCTGGCGCATGGACAGGCAGACATGGTGGTGCCGTATTCCT
GGGGTGAAGCGACGGCAAAGAAGCTGTACGCGCTCAGTCGCGCGCAAAAA
AAAGAGGACGAGGGAGAGGAGATGGGGAGAGACGACCTAGTGGCCTTTTA
TAGATTTCCTCATTTGCAGCATGAGTTTGACCGGCGAGTGCTATCCGTCT
TGGCTCGATGGATCGAGAGCGGGGCGAAGATTTTCCCGGATGTATCGAAG
GAGCAAGCGGATGGTAGCGTGATTCGCGTGCCTTTGGGCCAAAATTCATC
ACTCACGACAGCAAGATGTCCAGGAGGAGCACAAAGAGAAGCAGCAGCGG
GAACCGTGTCGACAAGCAAGGGTACAAGTGGCGTTTGCTCTCCGTGCGAG
GTTCAAATGACGCTGGAAGTGGAAGAAGAAGTGGCAGCAGACTCCTCTTT
CCCCTCCTCCTCCTCTTCCTCCACCCCCTCCTCCCCCCTCCCTCCTCCTT
CTCCTCCCTCTCCTCCGGTAGAGTGCGTCGGCATCGTGCCACGTTCCGGG
TACCTAGAACCAAGGTCCAAGACTTTCTTACCCGTCCAGTAGCCGCACGA
GGAGCATACTTCTCATTCATGGCAGGGAAGGAACCAGATACTTTTTGTTT
GGTTTTCGAAAGCCCCTGCCCGGAGGAGACGGCAGCGGCGGTGTTGGAGA
AAGTGAGAACCCGGTTGCTTGATCCTCATGCACCGGACGGACTGAGTGCG
TGCACTCCTTCGTGAGTAGGATACAACTGAAACAGAAAGGATTTAGATGC
ATAGAGAAGTTGATGCCATCGCTAGG
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Coding sequence (CDS) from alignment at chr3:1146113..1147588-

>NO03G03910.1 ID=NO03G03910.1|Name=NO03G03910.1|organism=Nannochloropsis oceanica|type=CDS|length=1125bp|location=Sequence derived from alignment at chr3:1146113..1147588- (Nannochloropsis oceanica)
ATGGCCAGCGGTAGCACCAAGATCAGGGCTAGCAGCAGTGTCAGCACTCA
CAGTGCCGATCGCCCCATGCCCCCTATCGAGAAGGGGGCGCTCATCTTTC
TTCATGGGAGCGGGGATGAAGGGGCCAACATGGAGTACGTCTTACGGGCT
ACCGGCTTTACGCAGCGCATGAAAACCTTGGGACTGAGCGTGCATTGCCC
TACTGCGCTGCCGCGCCCATACTCCTTTGCCGGTGGTGCGGTCAGCACCG
TGTGGTTTGATCGCACCAACCTCCACATTTCGGCGCCCGAGGACAAGGCA
GGCATGGACGCGTCCTTTGCGGTCTTGAGTGATCTGATGGAGAAGCTAGA
GACGGAGCACGGCGTCCCATCGTCACACATCTACTTGGGGGGCTTCTCAA
TGGGTGGAGGCATGGCGTTGGCTGCCTTGACTCGACAGATGAAGCCCCTG
GCAGGCGTCTTTGCGATTGGTAGTTTCTTGGCAGCGGATTCCGATGTATA
TAAGCAACAGCAGCAGCAGCGGTGGCGTTTGCCCCGCCTTTTGCTGGCGC
ATGGACAGGCAGACATGGTGGTGCCGTATTCCTGGGGTGAAGCGACGGCA
AAGAAGCTGTACGCGCTCAGTCGCGCGCAAAAAAAAGAGGACGAGGGAGA
GGAGATGGGGAGAGACGACCTAGTGGCCTTTTATAGATTTCCTCATTTGC
AGCATGAGTTTGACCGGCGAGTGCTATCCGTCTTGGCTCGATGGATCGAG
AGCGGGGCGAAGATTTTCCCGGATGTATCGAAGGAGCAAGCGGATGGTAG
CGTGATTCGCGTGCCTTTGGGCCAAAATTCATCACTCACGACAGCAAGAT
GTCCAGGAGGAGCACAAAGAGAAGCAGCAGCGGGAACCGTGTCGACAAGC
AAGGGTACAAGTGGCGTTTGCTCTCCGTGCGAGGTTCAAATGACGCTGGA
AGTGGAAGAAGAAGTGGCAGCAGACTCCTCTTTCCCCTCCTCCTCCTCTT
CCTCCACCCCCTCCTCCCCCCTCCCTCCTCCTTCTCCTCCCTCTCCTCCG
GTAGAGTGCGTCGGCATCGTGCCACGTTCCGGGTACCTAGAACCAAGGTC
CAAGACTTTCTTACCCGTCCAGTAG
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Synonyms
Publications