NO03G03880.1, NO03G03880.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO03G03880.1
Unique NameNO03G03880.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2122
Alignment locationchr3:1139762..1141883 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:1139762..1141883 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO03G03880.1 vs.
Match: XP_005855202.1 (ania-6a type cyclin, partial [Nannochloropsis gaditana CCMP526]; EKU21157.1 ania-6a type cyclin, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 517.7 bits (1332), Expect = 4.800e-143
Identity = 275/389 (70.69%), Postives = 305/389 (78.41%), Query Frame = 0 
Query:    1 MIEAPSTLPAMPSLAAAAAAAAEEGMQQQEREQEEEHDDSADGEWHEVVLLPREILRESPSQRLGVPEAVERRHRIFGCELIQEAGILLRQPQVVMATAQTLFHRFFYRRAFTSETAQTPPVLTPGKAPRAFLFDAFTAAMGCVFLASKLEEKPRAPRDVIFVFHHMCRRRRSLPPSLLEVTSSRYHDLREALLTIEKYVLKELGFGFYNVMDHPHKFILYYIKTLGGSPELAQRAWNYLNDSLRLDCCVRYRAELIACAALFMAARDLRIKLPDSPPWYGLFGASLTEIREVGNAILSLYHQQDEEGEEGPLRWLEPLHPFSLVGMEALGRVEGGGGDGGRGTA-GENAKMLVTTTSGAPGKKRSGREGGGEEGGEEEEDAAVTEEVE 389
            M++A   +P  P+ A  A A  E+       E +   D S DGEWHEVVLLPR +LRESPS+RLGVPEAVERRHRIFGCELIQEAGILLRQPQVVMATAQTLFHRFFYRRA TSE AQ  P   PGK+PR FLFDAFT AMGCVFLASKLEEKPRAPRDV+FVFHHMCRRRR L PSLLEVTS RYHDLREALL IEKYVLKELGFGFY++MDHPHKFILYYIKTL G+P LAQRAWNYLNDSLRLDCCVR+RAELIAC AL+MA+RDL +KLPD PPW+ LFGASL E+R VGN ILSLY ++DEEGEE PLRWLEPLHP SLV MEAL +VEG  G  G+G   GE        ++ +PG   +    G EEG E+      ++E E
Sbjct:    1 MVQASPLVPTAPAQAEEAPATKED---VSLGELDGLEDVSVDGEWHEVVLLPRHVLRESPSRRLGVPEAVERRHRIFGCELIQEAGILLRQPQVVMATAQTLFHRFFYRRALTSERAQDVPEPGPGKSPRVFLFDAFTVAMGCVFLASKLEEKPRAPRDVLFVFHHMCRRRRGLGPSLLEVTSVRYHDLREALLMIEKYVLKELGFGFYSIMDHPHKFILYYIKTLDGTPTLAQRAWNYLNDSLRLDCCVRFRAELIACTALYMASRDLGVKLPDDPPWFALFGASLEEMRHVGNVILSLYREKDEEGEEAPLRWLEPLHPGSLVAMEALRKVEGKEGKEGKGKGQGE--------STDSPG---AMEVDGAEEGSEKHGGGGASKEGE 375
The following BLAST results are available for this feature:
BLAST of NO03G03880.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005855202.14.800e-14370.69ania-6a type cyclin, partial [Nannochloropsis gadi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO03G03880NO03G03880Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO03G03880.1NO03G03880.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO03G03880.1.cds1NO03G03880.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO03G03880.1 ID=NO03G03880.1|Name=NO03G03880.1|organism=Nannochloropsis oceanica|type=mRNA|length=2122bp
ACAGGACATACCAGACCAGCAGGAAGGAACAGGAGCGTCGACTTGCCCCA
TCGCGGGCGCCTTAGGCCTGAGGGCCACTGGCTTACCTGCAGCGGCATGA
TAGAGGCACCTAGCACCTTGCCCGCGATGCCATCCTTGGCAGCAGCCGCC
GCCGCAGCCGCGGAGGAAGGCATGCAACAGCAGGAGCGGGAGCAGGAGGA
GGAACACGACGACAGCGCTGACGGAGAATGGCACGAAGTGGTGTTGCTGC
CCCGGGAGATCTTGCGTGAGTCCCCCAGCCAACGCCTGGGCGTGCCTGAG
GCGGTGGAACGTCGCCACCGCATTTTTGGCTGTGAACTCATCCAGGAGGC
CGGCATCCTTCTCCGACAACCCCAAGTTGTCATGGCTACAGCTCAAACGC
TTTTCCATCGCTTCTTCTACCGCCGTGCATTCACCTCGGAAACAGCACAA
ACCCCCCCCGTCCTCACTCCTGGCAAAGCCCCCCGTGCGTTCCTTTTTGA
TGCCTTCACCGCCGCGATGGGCTGCGTCTTCCTCGCCTCCAAACTCGAGG
AGAAACCCCGGGCCCCCCGCGACGTCATCTTCGTCTTCCATCACATGTGT
CGGCGGCGTCGATCTCTCCCACCTTCCTTGCTGGAAGTCACCTCTTCTCG
GTACCATGACTTGCGCGAAGCCCTCTTGACAATTGAAAAGTACGTCCTGA
AAGAACTCGGCTTCGGGTTTTATAATGTGATGGACCACCCACATAAATTC
ATCCTCTATTACATCAAAACCTTGGGGGGTTCCCCGGAGCTTGCTCAGAG
GGCCTGGAATTATTTGAACGATAGTTTGAGGCTTGATTGCTGCGTGCGCT
ACCGCGCGGAGCTGATTGCATGTGCGGCTCTGTTTATGGCGGCGAGGGAT
TTGAGGATCAAGCTGCCTGATTCCCCGCCTTGGTATGGTTTATTCGGTGC
AAGCTTGACGGAGATTAGGGAGGTGGGGAATGCGATTCTGTCCTTGTACC
ATCAGCAGGACGAGGAAGGGGAGGAGGGACCGTTGAGGTGGTTAGAGCCG
TTACATCCCTTCAGTTTGGTGGGGATGGAGGCGTTGGGGAGGGTGGAGGG
TGGAGGGGGGGACGGAGGGAGGGGTACAGCGGGGGAGAATGCGAAGATGT
TGGTCACGACGACAAGTGGTGCACCGGGGAAAAAGAGGAGTGGGAGGGAG
GGCGGGGGGGAGGAAGGAGGGGAGGAGGAGGAGGATGCGGCAGTTACGGA
GGAGGTGGAACCCACGAGGGGGAAGAAGGAGAAGAGAGAAATGGAGAATG
GGCATGACGCGAATGAGGACAAAGGAGACGAGGATGGGGAGGAGTCTGAC
ACCGAGAAGAAGAGGCTGAGGAAGAAGAGAAAGAAGAGGCAGTCCCGCTC
CCGCTCGTCACGCTCCTCTTCCTCTTCCTCCTCTCCCCACTTCCCCTCCA
CCACTGCCACCGCTGGGGTTGCTGCTAGTGATGCTGCTGCAGACGGAGAG
AAGAAAGCAAGTAAACCCTCGTCCTTCTCTCGGTCGTTTCGACGCCAGAG
CCGATCGTCTAGCCCCCCCCTGCTGTCAAGGCCAGGAGCAGGAGCCGCGG
GAGGGAGAGAGGGAGGGAGGAGCGACGGAAACACAGGGGGCGGAGTCGTA
CCAGGAGCAGGAGTAAAAGTCGAGAGCGAGGTGGTGGAGGGAGAGAGCGT
GGACGGGAGAGGGAGAGGGAGAGGGAGAGGGTTAGAGGAAGGGAGGGAGG
GAGGAAAAGTGGGGGTGGGGGTGGGGGGAGAGATTATGACGACCGCCGGG
AGGGGGCTTCGCACCATCGAGGAGGAGCAAGGGAGGGAGGGAACAGTGGA
GGATCGCGGTCGAGGTATGATGTAGAGAGGAAGGAGAGTGGGAGTGGAAG
TGGGGCCTTAGGAGGGGGTACAGGGAAAAAGAGAGTGATAGATTTCGTAG
AGATCGATCGAGGGAGAGGTGAGAGGGAAGAGGGAGGAGGCAGTCAATAT
ATTATACGCGGGTTAGCAGTCTGGAGCCATTTAATTGATAATGGATGACA
ACGTCAAAAATATGAATGGGGATAGGAGGAGGATTGCAAAGAAGCAACTA
AGAGGCATGTTTGTACCATACC
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protein sequence of NO03G03880.1

>NO03G03880.1-protein ID=NO03G03880.1-protein|Name=NO03G03880.1|organism=Nannochloropsis oceanica|type=polypeptide|length=593bp
MIEAPSTLPAMPSLAAAAAAAAEEGMQQQEREQEEEHDDSADGEWHEVVL
LPREILRESPSQRLGVPEAVERRHRIFGCELIQEAGILLRQPQVVMATAQ
TLFHRFFYRRAFTSETAQTPPVLTPGKAPRAFLFDAFTAAMGCVFLASKL
EEKPRAPRDVIFVFHHMCRRRRSLPPSLLEVTSSRYHDLREALLTIEKYV
LKELGFGFYNVMDHPHKFILYYIKTLGGSPELAQRAWNYLNDSLRLDCCV
RYRAELIACAALFMAARDLRIKLPDSPPWYGLFGASLTEIREVGNAILSL
YHQQDEEGEEGPLRWLEPLHPFSLVGMEALGRVEGGGGDGGRGTAGENAK
MLVTTTSGAPGKKRSGREGGGEEGGEEEEDAAVTEEVEPTRGKKEKREME
NGHDANEDKGDEDGEESDTEKKRLRKKRKKRQSRSRSSRSSSSSSSPHFP
STTATAGVAASDAAADGEKKASKPSSFSRSFRRQSRSSSPPLLSRPGAGA
AGGREGGRSDGNTGGGVVPGAGVKVESEVVEGESVDGRGRGRGRGLEEGR
EGGKVGVGVGGEIMTTAGRGLRTIEEEQGREGTVEDRGRGMM*
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mRNA from alignment at chr3:1139762..1141883+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO03G03880.1 ID=NO03G03880.1|Name=NO03G03880.1|organism=Nannochloropsis oceanica|type=mRNA|length=2122bp|location=Sequence derived from alignment at chr3:1139762..1141883+ (Nannochloropsis oceanica)
ACAGGACATACCAGACCAGCAGGAAGGAACAGGAGCGTCGACTTGCCCCA
TCGCGGGCGCCTTAGGCCTGAGGGCCACTGGCTTACCTGCAGCGGCATGA
TAGAGGCACCTAGCACCTTGCCCGCGATGCCATCCTTGGCAGCAGCCGCC
GCCGCAGCCGCGGAGGAAGGCATGCAACAGCAGGAGCGGGAGCAGGAGGA
GGAACACGACGACAGCGCTGACGGAGAATGGCACGAAGTGGTGTTGCTGC
CCCGGGAGATCTTGCGTGAGTCCCCCAGCCAACGCCTGGGCGTGCCTGAG
GCGGTGGAACGTCGCCACCGCATTTTTGGCTGTGAACTCATCCAGGAGGC
CGGCATCCTTCTCCGACAACCCCAAGTTGTCATGGCTACAGCTCAAACGC
TTTTCCATCGCTTCTTCTACCGCCGTGCATTCACCTCGGAAACAGCACAA
ACCCCCCCCGTCCTCACTCCTGGCAAAGCCCCCCGTGCGTTCCTTTTTGA
TGCCTTCACCGCCGCGATGGGCTGCGTCTTCCTCGCCTCCAAACTCGAGG
AGAAACCCCGGGCCCCCCGCGACGTCATCTTCGTCTTCCATCACATGTGT
CGGCGGCGTCGATCTCTCCCACCTTCCTTGCTGGAAGTCACCTCTTCTCG
GTACCATGACTTGCGCGAAGCCCTCTTGACAATTGAAAAGTACGTCCTGA
AAGAACTCGGCTTCGGGTTTTATAATGTGATGGACCACCCACATAAATTC
ATCCTCTATTACATCAAAACCTTGGGGGGTTCCCCGGAGCTTGCTCAGAG
GGCCTGGAATTATTTGAACGATAGTTTGAGGCTTGATTGCTGCGTGCGCT
ACCGCGCGGAGCTGATTGCATGTGCGGCTCTGTTTATGGCGGCGAGGGAT
TTGAGGATCAAGCTGCCTGATTCCCCGCCTTGGTATGGTTTATTCGGTGC
AAGCTTGACGGAGATTAGGGAGGTGGGGAATGCGATTCTGTCCTTGTACC
ATCAGCAGGACGAGGAAGGGGAGGAGGGACCGTTGAGGTGGTTAGAGCCG
TTACATCCCTTCAGTTTGGTGGGGATGGAGGCGTTGGGGAGGGTGGAGGG
TGGAGGGGGGGACGGAGGGAGGGGTACAGCGGGGGAGAATGCGAAGATGT
TGGTCACGACGACAAGTGGTGCACCGGGGAAAAAGAGGAGTGGGAGGGAG
GGCGGGGGGGAGGAAGGAGGGGAGGAGGAGGAGGATGCGGCAGTTACGGA
GGAGGTGGAACCCACGAGGGGGAAGAAGGAGAAGAGAGAAATGGAGAATG
GGCATGACGCGAATGAGGACAAAGGAGACGAGGATGGGGAGGAGTCTGAC
ACCGAGAAGAAGAGGCTGAGGAAGAAGAGAAAGAAGAGGCAGTCCCGCTC
CCGCTCGTCACGCTCCTCTTCCTCTTCCTCCTCTCCCCACTTCCCCTCCA
CCACTGCCACCGCTGGGGTTGCTGCTAGTGATGCTGCTGCAGACGGAGAG
AAGAAAGCAAGTAAACCCTCGTCCTTCTCTCGGTCGTTTCGACGCCAGAG
CCGATCGTCTAGCCCCCCCCTGCTGTCAAGGCCAGGAGCAGGAGCCGCGG
GAGGGAGAGAGGGAGGGAGGAGCGACGGAAACACAGGGGGCGGAGTCGTA
CCAGGAGCAGGAGTAAAAGTCGAGAGCGAGGTGGTGGAGGGAGAGAGCGT
GGACGGGAGAGGGAGAGGGAGAGGGAGAGGGTTAGAGGAAGGGAGGGAGG
GAGGAAAAGTGGGGGTGGGGGTGGGGGGAGAGATTATGACGACCGCCGGG
AGGGGGCTTCGCACCATCGAGGAGGAGCAAGGGAGGGAGGGAACAGTGGA
GGATCGCGGTCGAGGTATGATGTAGAGAGGAAGGAGAGTGGGAGTGGAAG
TGGGGCCTTAGGAGGGGGTACAGGGAAAAAGAGAGTGATAGATTTCGTAG
AGATCGATCGAGGGAGAGGTGAGAGGGAAGAGGGAGGAGGCAGTCAATAT
ATTATACGCGGGTTAGCAGTCTGGAGCCATTTAATTGATAATGGATGACA
ACGTCAAAAATATGAATGGGGATAGGAGGAGGATTGCAAAGAAGCAACTA
AGAGGCATGTTTGTACCATACC
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Coding sequence (CDS) from alignment at chr3:1139762..1141883+

>NO03G03880.1 ID=NO03G03880.1|Name=NO03G03880.1|organism=Nannochloropsis oceanica|type=CDS|length=1779bp|location=Sequence derived from alignment at chr3:1139762..1141883+ (Nannochloropsis oceanica)
ATGATAGAGGCACCTAGCACCTTGCCCGCGATGCCATCCTTGGCAGCAGC
CGCCGCCGCAGCCGCGGAGGAAGGCATGCAACAGCAGGAGCGGGAGCAGG
AGGAGGAACACGACGACAGCGCTGACGGAGAATGGCACGAAGTGGTGTTG
CTGCCCCGGGAGATCTTGCGTGAGTCCCCCAGCCAACGCCTGGGCGTGCC
TGAGGCGGTGGAACGTCGCCACCGCATTTTTGGCTGTGAACTCATCCAGG
AGGCCGGCATCCTTCTCCGACAACCCCAAGTTGTCATGGCTACAGCTCAA
ACGCTTTTCCATCGCTTCTTCTACCGCCGTGCATTCACCTCGGAAACAGC
ACAAACCCCCCCCGTCCTCACTCCTGGCAAAGCCCCCCGTGCGTTCCTTT
TTGATGCCTTCACCGCCGCGATGGGCTGCGTCTTCCTCGCCTCCAAACTC
GAGGAGAAACCCCGGGCCCCCCGCGACGTCATCTTCGTCTTCCATCACAT
GTGTCGGCGGCGTCGATCTCTCCCACCTTCCTTGCTGGAAGTCACCTCTT
CTCGGTACCATGACTTGCGCGAAGCCCTCTTGACAATTGAAAAGTACGTC
CTGAAAGAACTCGGCTTCGGGTTTTATAATGTGATGGACCACCCACATAA
ATTCATCCTCTATTACATCAAAACCTTGGGGGGTTCCCCGGAGCTTGCTC
AGAGGGCCTGGAATTATTTGAACGATAGTTTGAGGCTTGATTGCTGCGTG
CGCTACCGCGCGGAGCTGATTGCATGTGCGGCTCTGTTTATGGCGGCGAG
GGATTTGAGGATCAAGCTGCCTGATTCCCCGCCTTGGTATGGTTTATTCG
GTGCAAGCTTGACGGAGATTAGGGAGGTGGGGAATGCGATTCTGTCCTTG
TACCATCAGCAGGACGAGGAAGGGGAGGAGGGACCGTTGAGGTGGTTAGA
GCCGTTACATCCCTTCAGTTTGGTGGGGATGGAGGCGTTGGGGAGGGTGG
AGGGTGGAGGGGGGGACGGAGGGAGGGGTACAGCGGGGGAGAATGCGAAG
ATGTTGGTCACGACGACAAGTGGTGCACCGGGGAAAAAGAGGAGTGGGAG
GGAGGGCGGGGGGGAGGAAGGAGGGGAGGAGGAGGAGGATGCGGCAGTTA
CGGAGGAGGTGGAACCCACGAGGGGGAAGAAGGAGAAGAGAGAAATGGAG
AATGGGCATGACGCGAATGAGGACAAAGGAGACGAGGATGGGGAGGAGTC
TGACACCGAGAAGAAGAGGCTGAGGAAGAAGAGAAAGAAGAGGCAGTCCC
GCTCCCGCTCGTCACGCTCCTCTTCCTCTTCCTCCTCTCCCCACTTCCCC
TCCACCACTGCCACCGCTGGGGTTGCTGCTAGTGATGCTGCTGCAGACGG
AGAGAAGAAAGCAAGTAAACCCTCGTCCTTCTCTCGGTCGTTTCGACGCC
AGAGCCGATCGTCTAGCCCCCCCCTGCTGTCAAGGCCAGGAGCAGGAGCC
GCGGGAGGGAGAGAGGGAGGGAGGAGCGACGGAAACACAGGGGGCGGAGT
CGTACCAGGAGCAGGAGTAAAAGTCGAGAGCGAGGTGGTGGAGGGAGAGA
GCGTGGACGGGAGAGGGAGAGGGAGAGGGAGAGGGTTAGAGGAAGGGAGG
GAGGGAGGAAAAGTGGGGGTGGGGGTGGGGGGAGAGATTATGACGACCGC
CGGGAGGGGGCTTCGCACCATCGAGGAGGAGCAAGGGAGGGAGGGAACAG
TGGAGGATCGCGGTCGAGGTATGATGTAG
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Synonyms
Publications