NO03G03870.1, NO03G03870.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO03G03870.1
Unique NameNO03G03870.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1281
Alignment locationchr3:1137391..1139082 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:1137391..1139082 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO03G03870.1 vs.
Match: EWM29801.1 (histone deacetylase 1 [Nannochloropsis gaditana])

HSP 1 Score: 751.1 bits (1938), Expect = 1.800e-213
Identity = 362/425 (85.18%), Postives = 385/425 (90.59%), Query Frame = 0 
Query:    1 MSSKKRVSYFYHGDVGHYYYGPGHPMKPHRLKLTHHLVLGYGLYRKMEVYRPHIATTQELLKFHSEEYVNFLSRINPDMGRNLSTNLH-KFNVGEFTDCPIFDGMMEFCKIYTGCSIDGAQKLNHKVTDIAVNWSGGLHHAKKSEASGFCYINDIVLAILELLKYHPRVLYIDIDIHHGDGVEEAFYCTDRVMTVSFHKYGDFFPGTGNIKDTGSKAGKNYSVNVPLEDGIDDASYEMVFKPVMEKVMEVYQPTAVVLQCGADSLTGDRLGCFNLTLKGHAKCVEMMKSYNVPLLILGGGGYAIRNVARCWAYETAVLLEEEVSDDIPKNDYLDYYAPDYKLHLPPGTKENQNSLEGLEEIKLQILQQLGQIQGAPSVQLQEVPPDWATGGGKGGEKESGGE---------GGERKGRGGPGDDG 416
            MSSKKRVSYFYHGDVGHYYYGPGHPMKPHRLKLTHHLVLGYGLYRKMEVYRPHIATTQEL KFHS+EYVNFLSR+NPDMGR LS+++H KFNVGE+TDCPIFDGMMEFCKIYTGCSIDGAQKLNHK+TD+AVNWSGGLHHAKK EASGFCYINDIVLAILELLKYHPRVLYIDIDIHHGDGVEEAFYCTDRVMTVSFH+YGDFFPGTGNIKD G+K GK YSVNVPLE+GIDDASYE VF+PVM KVMEVYQP+AVVLQCGADSL+GDRLGCFNLTL+GHAKCVEMMK YNVPLLILGGGGYAIRNVARCWA+ET+VLLEEEVSD+IP+NDY DYYAPDYKLHLPPGT ENQNS EGLE IK+QILQQL QI GAPSVQ+QEVPPDWAT    GGE E   +         GGER+       DG
Sbjct:   50 MSSKKRVSYFYHGDVGHYYYGPGHPMKPHRLKLTHHLVLGYGLYRKMEVYRPHIATTQELQKFHSQEYVNFLSRVNPDMGRTLSSSVHSKFNVGEYTDCPIFDGMMEFCKIYTGCSIDGAQKLNHKITDVAVNWSGGLHHAKKGEASGFCYINDIVLAILELLKYHPRVLYIDIDIHHGDGVEEAFYCTDRVMTVSFHRYGDFFPGTGNIKDVGAKNGKYYSVNVPLEEGIDDASYERVFRPVMAKVMEVYQPSAVVLQCGADSLSGDRLGCFNLTLRGHAKCVEMMKGYNVPLLILGGGGYAIRNVARCWAFETSVLLEEEVSDEIPRNDYYDYYAPDYKLHLPPGTTENQNSTEGLEAIKVQILQQLSQIPGAPSVQMQEVPPDWATNERGGGEDEEDPDVRSSNRNRFGGERREHEAEFYDG 474
The following BLAST results are available for this feature:
BLAST of NO03G03870.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29801.11.800e-21385.18histone deacetylase 1 [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO03G03870NO03G03870Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO03G03870.1NO03G03870.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO03G03870.1.cds1NO03G03870.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO03G03870.1.cds2NO03G03870.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO03G03870.1.cds3NO03G03870.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO03G03870.1 ID=NO03G03870.1|Name=NO03G03870.1|organism=Nannochloropsis oceanica|type=mRNA|length=1281bp
ACAGTGTACGAGATGTCGTCTAAAAAACGCGTGTCGTACTTCTACCACGG
CGACGTGGGCCACTACTACTACGGCCCTGGCCACCCAATGAAGCCCCACC
GCCTTAAGCTTACCCATCACCTCGTCCTCGGCTATGGGCTCTACCGTAAA
ATGGAGGTCTACCGCCCGCATATCGCCACCACGCAAGAACTTCTGAAATT
CCATTCTGAAGAGTACGTAAATTTTCTTTCACGTATTAACCCTGATATGG
GTCGAAATCTGAGCACAAATTTGCATAAGTTCAATGTGGGGGAGTTCACG
GATTGTCCGATCTTCGACGGGATGATGGAGTTCTGTAAGATCTATACCGG
CTGCTCAATCGATGGGGCGCAGAAGCTGAACCATAAGGTGACGGATATCG
CGGTAAATTGGTCTGGGGGGCTGCACCACGCAAAGAAGAGCGAGGCCAGC
GGGTTTTGTTACATCAATGACATTGTCTTGGCCATCCTAGAGCTACTGAA
GTACCACCCCCGCGTCCTGTACATCGATATTGACATCCATCACGGCGACG
GCGTGGAGGAGGCGTTCTACTGCACCGATCGCGTCATGACAGTGTCTTTC
CATAAATACGGCGATTTCTTCCCTGGTACGGGAAACATCAAGGACACGGG
AAGCAAGGCCGGGAAGAATTATTCCGTCAATGTGCCCCTTGAGGACGGGA
TCGACGACGCCAGCTACGAGATGGTATTCAAGCCGGTGATGGAGAAAGTG
ATGGAGGTCTATCAACCCACGGCGGTGGTGCTGCAATGCGGCGCCGATTC
CTTGACAGGGGACAGGCTCGGTTGCTTTAATTTAACCCTCAAGGGGCATG
CCAAATGTGTCGAAATGATGAAGAGCTACAACGTTCCCTTGTTGATTCTG
GGGGGGGGGGGGTACGCCATTCGGAACGTGGCGCGGTGCTGGGCGTATGA
AACCGCAGTGTTGTTGGAGGAGGAGGTGAGTGACGATATCCCCAAAAACG
ACTACCTCGATTACTACGCCCCAGATTACAAGTTGCACTTGCCGCCGGGC
ACCAAGGAGAACCAGAACTCGTTGGAAGGGTTGGAAGAGATTAAACTCCA
GATTTTGCAGCAATTGGGGCAAATCCAAGGCGCGCCGTCTGTGCAGCTGC
AGGAGGTACCTCCTGATTGGGCCACGGGGGGGGGGAAGGGGGGGGAGAAA
GAGAGCGGGGGAGAGGGAGGAGAGAGGAAGGGGAGAGGAGGACCGGGAGA
CGATGGACGAGCGGTCGGTTGGCAAGAATAA
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protein sequence of NO03G03870.1

>NO03G03870.1-protein ID=NO03G03870.1-protein|Name=NO03G03870.1|organism=Nannochloropsis oceanica|type=polypeptide|length=423bp
MSSKKRVSYFYHGDVGHYYYGPGHPMKPHRLKLTHHLVLGYGLYRKMEVY
RPHIATTQELLKFHSEEYVNFLSRINPDMGRNLSTNLHKFNVGEFTDCPI
FDGMMEFCKIYTGCSIDGAQKLNHKVTDIAVNWSGGLHHAKKSEASGFCY
INDIVLAILELLKYHPRVLYIDIDIHHGDGVEEAFYCTDRVMTVSFHKYG
DFFPGTGNIKDTGSKAGKNYSVNVPLEDGIDDASYEMVFKPVMEKVMEVY
QPTAVVLQCGADSLTGDRLGCFNLTLKGHAKCVEMMKSYNVPLLILGGGG
YAIRNVARCWAYETAVLLEEEVSDDIPKNDYLDYYAPDYKLHLPPGTKEN
QNSLEGLEEIKLQILQQLGQIQGAPSVQLQEVPPDWATGGGKGGEKESGG
EGGERKGRGGPGDDGRAVGWQE*
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mRNA from alignment at chr3:1137391..1139082-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO03G03870.1 ID=NO03G03870.1|Name=NO03G03870.1|organism=Nannochloropsis oceanica|type=mRNA|length=1692bp|location=Sequence derived from alignment at chr3:1137391..1139082- (Nannochloropsis oceanica)
ACAGTGTACGAGATGTCGTCTAAAAAACGCGTGTCGTACTTCTACCACGG
CGACGTGGGCCACTACTACTACGGCCCTGGCCACCCAATGAAGGTATGTT
GTGATGGTCGCGCCAGTTCGCATGAAGGAAAAGGTGTGGTTGATGTGTCG
CGTGCGCTTCTTTGGTCTACTGTTTGTCTTATGTGCCATCTTGTAGTTCC
ATCGCTTATTGCGATCGTGTACCGTTGTAACGCTGACCCCATACTTCTCT
CCCCTTACCTATCCCTGTCTCCGGCCTTTACTTTTATTCCTCCAATAAAG
CCCCACCGCCTTAAGCTTACCCATCACCTCGTCCTCGGCTATGGGCTCTA
CCGTAAAATGGAGGTCTACCGCCCGCATATCGCCACCACGCAAGAACTTC
TGAAATTCCATTCTGAAGAGTACGTAAATTTTCTTTCACGTATTAACCCT
GATATGGGTCGAAATCTGAGCACAAATTTGCATAAGTTCAATGTGGGGGA
GTTCACGGATTGTCCGATCTTCGACGGGATGATGGAGTTCTGTAAGATCT
ATACCGGCTGCTCAATCGATGGGGCGCAGAAGCTGAACCATAAGGTGACG
GATATCGCGGTAAATTGGTCTGGGGGGCTGCACCACGCAAAGAAGAGCGA
GGCCAGCGGGTTTTGTTACATCAATGTACGTGCCCTCCCTTTATCTGTTT
CTCCCTCCCTTCTCCTTCCTCTTTCCCTCCCTTCCTCGTCTTTCCCATCT
TTTTCTTCACCCTTCCATCCCTTTATTCCCCGCCTGTCGTTGTACGCATG
GCGATTGGAGAAGCAGCCTCTGGCTCAACCGCCTGCCCACCGCCCCTTTC
TCCCTCCCTTCCTCTTTTCCTCCCATCAGGACATTGTCTTGGCCATCCTA
GAGCTACTGAAGTACCACCCCCGCGTCCTGTACATCGATATTGACATCCA
TCACGGCGACGGCGTGGAGGAGGCGTTCTACTGCACCGATCGCGTCATGA
CAGTGTCTTTCCATAAATACGGCGATTTCTTCCCTGGTACGGGAAACATC
AAGGACACGGGAAGCAAGGCCGGGAAGAATTATTCCGTCAATGTGCCCCT
TGAGGACGGGATCGACGACGCCAGCTACGAGATGGTATTCAAGCCGGTGA
TGGAGAAAGTGATGGAGGTCTATCAACCCACGGCGGTGGTGCTGCAATGC
GGCGCCGATTCCTTGACAGGGGACAGGCTCGGTTGCTTTAATTTAACCCT
CAAGGGGCATGCCAAATGTGTCGAAATGATGAAGAGCTACAACGTTCCCT
TGTTGATTCTGGGGGGGGGGGGGTACGCCATTCGGAACGTGGCGCGGTGC
TGGGCGTATGAAACCGCAGTGTTGTTGGAGGAGGAGGTGAGTGACGATAT
CCCCAAAAACGACTACCTCGATTACTACGCCCCAGATTACAAGTTGCACT
TGCCGCCGGGCACCAAGGAGAACCAGAACTCGTTGGAAGGGTTGGAAGAG
ATTAAACTCCAGATTTTGCAGCAATTGGGGCAAATCCAAGGCGCGCCGTC
TGTGCAGCTGCAGGAGGTACCTCCTGATTGGGCCACGGGGGGGGGGAAGG
GGGGGGAGAAAGAGAGCGGGGGAGAGGGAGGAGAGAGGAAGGGGAGAGGA
GGACCGGGAGACGATGGACGAGCGGTCGGTTGGCAAGAATAA
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Coding sequence (CDS) from alignment at chr3:1137391..1139082-

>NO03G03870.1 ID=NO03G03870.1|Name=NO03G03870.1|organism=Nannochloropsis oceanica|type=CDS|length=1269bp|location=Sequence derived from alignment at chr3:1137391..1139082- (Nannochloropsis oceanica)
ATGTCGTCTAAAAAACGCGTGTCGTACTTCTACCACGGCGACGTGGGCCA
CTACTACTACGGCCCTGGCCACCCAATGAAGCCCCACCGCCTTAAGCTTA
CCCATCACCTCGTCCTCGGCTATGGGCTCTACCGTAAAATGGAGGTCTAC
CGCCCGCATATCGCCACCACGCAAGAACTTCTGAAATTCCATTCTGAAGA
GTACGTAAATTTTCTTTCACGTATTAACCCTGATATGGGTCGAAATCTGA
GCACAAATTTGCATAAGTTCAATGTGGGGGAGTTCACGGATTGTCCGATC
TTCGACGGGATGATGGAGTTCTGTAAGATCTATACCGGCTGCTCAATCGA
TGGGGCGCAGAAGCTGAACCATAAGGTGACGGATATCGCGGTAAATTGGT
CTGGGGGGCTGCACCACGCAAAGAAGAGCGAGGCCAGCGGGTTTTGTTAC
ATCAATGACATTGTCTTGGCCATCCTAGAGCTACTGAAGTACCACCCCCG
CGTCCTGTACATCGATATTGACATCCATCACGGCGACGGCGTGGAGGAGG
CGTTCTACTGCACCGATCGCGTCATGACAGTGTCTTTCCATAAATACGGC
GATTTCTTCCCTGGTACGGGAAACATCAAGGACACGGGAAGCAAGGCCGG
GAAGAATTATTCCGTCAATGTGCCCCTTGAGGACGGGATCGACGACGCCA
GCTACGAGATGGTATTCAAGCCGGTGATGGAGAAAGTGATGGAGGTCTAT
CAACCCACGGCGGTGGTGCTGCAATGCGGCGCCGATTCCTTGACAGGGGA
CAGGCTCGGTTGCTTTAATTTAACCCTCAAGGGGCATGCCAAATGTGTCG
AAATGATGAAGAGCTACAACGTTCCCTTGTTGATTCTGGGGGGGGGGGGG
TACGCCATTCGGAACGTGGCGCGGTGCTGGGCGTATGAAACCGCAGTGTT
GTTGGAGGAGGAGGTGAGTGACGATATCCCCAAAAACGACTACCTCGATT
ACTACGCCCCAGATTACAAGTTGCACTTGCCGCCGGGCACCAAGGAGAAC
CAGAACTCGTTGGAAGGGTTGGAAGAGATTAAACTCCAGATTTTGCAGCA
ATTGGGGCAAATCCAAGGCGCGCCGTCTGTGCAGCTGCAGGAGGTACCTC
CTGATTGGGCCACGGGGGGGGGGAAGGGGGGGGAGAAAGAGAGCGGGGGA
GAGGGAGGAGAGAGGAAGGGGAGAGGAGGACCGGGAGACGATGGACGAGC
GGTCGGTTGGCAAGAATAA
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Synonyms
Publications