NO03G03590.1, NO03G03590.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO03G03590.1
Unique NameNO03G03590.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1836
Alignment locationchr3:1066920..1068755 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:1066920..1068755 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO03G03590.1 vs.
Match: EWM29832.1 (Mitochodrial transcription termination factor [Nannochloropsis gaditana])

HSP 1 Score: 504.6 bits (1298), Expect = 4.300e-139
Identity = 295/595 (49.58%), Postives = 383/595 (64.37%), Query Frame = 0 
Query:    9 SRTQDMIMFGVALVVATTLMPGPSHAFVGLPRPAHHHRRRERPWIQQSCFSVSPASASTTIPTLFPTPTPDDMAIYSDRLHALDMLAPLQVAIIQSRLEHLHTLFPSENATSMAYRLPDLLRVEPTDLAHRVAERRVQLEALLPACRPLRMMAKVPALVFQDFDAQTKKVAENLRREFPEMDLARVVYQNPIVLAREWDAVILPKITALRALFPKQDLGKMIARRPDLLSRDVEGKMTEKLAGLAALLPSVNVQELVARQPDLLARDLSLISSRIKHLESLFPTSIPGEIFTMISRKPTLLLTNSDRVIGPKLGHLKRLLGSAAALELCHAMPTIFNRDLDKVEERLGALIAHLPGIDVVRFLKLNPAFLTEPEGDVSGHLAALHTALPPGVELAKLLAQEPQLYTEKAAVLALKLREVRERTGLEVEEMTVRLGRDARFLIVPYGLLAARLRFWAAWQQVSAEGKD---AEEMKGKQAGEEERKKALKRINLSSLVGMPLDRFVALYPAYPHYLASKLGGDWTPALGGNNAFRLEKVYSGVLWRQTGLVYEKARFTGDHGGDHGGGYHQVNGGGGRQWKKGSQYSKQQSPGRSK 601
            +R   +++ G+ L+V T + P  S AF G  R      +     + Q C  + PA+A+TT+     TPTP+D+  ++ RL  L  LA   + +I+ RLEHL+ LFP ENATSM  R+PDLL VEP DLA RVAER+VQL ALLPACRPLR+MAK P LVFQDFD+Q K  AE L  E P MDLARVV  NP VL R WD V+ P+I ALRA+FP+++LG++I RRPDLLSRD  G++ E + GLA  LPSV V+ L ARQPD+LA +   +++RIKHLE+LFP +   E+  MI+RKP+LLLT+ +RV+ PKL  L+ +LGSAAA ELC  MP+I +RDL++VE RL  L A +PG D+VRFL+ NPAFL+   G V   L AL +  P GVEL K+L +EP+LY E   VLALKL EV   T L  EE+  RL RDARFL+V YG LA+RLRF  A + V AE  +     +  G+  GE   + +L+RINL S+  MPL RF+ LYP YP YL  +LG   TP   G+N + LE+ +S +LWR               GG       Q+NG GGR  +  S   ++++ G  K
Sbjct:   11 TRYHPLLLCGLLLIVGTCVRP--SDAFTGQSRKFFCQWKECWKTLSQPCRGMEPAAATTTVSG---TPTPEDLIGHATRLQPLAGLAFFPLGLIERRLEHLYALFPRENATSMVCRVPDLLCVEPNDLAARVAERQVQLAALLPACRPLRLMAKAPILVFQDFDSQIKSTAERLEWELPGMDLARVVCPNPAVLTRAWDTVLFPQIVALRAIFPQENLGRIIMRRPDLLSRDAAGRLREGMEGLARHLPSVKVEMLAARQPDILALEPRQVAARIKHLEALFPAATRAEVAKMINRKPSLLLTSVERVLRPKLARLRNILGSAAAQELCQTMPSILSRDLEQVEARLKLLRAPVPGQDLVRFLRYNPAFLSSAPGAVGARLTALQSVFPRGVELGKMLIREPKLYAEDVDVLALKLAEVHAATRLSKEEVVERLRRDARFLLVSYGRLASRLRFLKALENVGAEPWEWARQGDPGGEGGGEGGVRPSLQRINLGSMASMPLGRFLHLYPLYPFYLLHELGRSPTPHKEGSNVYHLEEAHSQMLWRD--------------GGLRDSPVKQINGNGGRPGRPHS-IGRKENMGEEK 585
The following BLAST results are available for this feature:
BLAST of NO03G03590.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29832.14.300e-13949.58Mitochodrial transcription termination factor [Nan... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO03G03590NO03G03590Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO03G03590.1NO03G03590.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO03G03590.1.cds1NO03G03590.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO03G03590.1 ID=NO03G03590.1|Name=NO03G03590.1|organism=Nannochloropsis oceanica|type=mRNA|length=1836bp
ATGGTTAACTCAACCAAGCTTGAGTCCAGGACTCAAGATATGATCATGTT
TGGCGTCGCCCTTGTGGTTGCCACCACCCTCATGCCAGGGCCGAGTCACG
CGTTTGTAGGCCTTCCGCGGCCAGCACACCATCACAGAAGAAGAGAACGG
CCATGGATACAGCAATCCTGTTTCTCGGTATCTCCCGCCTCCGCAAGCAC
TACGATCCCCACCCTGTTCCCCACTCCCACTCCAGATGACATGGCCATCT
ACTCCGACCGCCTTCATGCCCTCGACATGCTGGCCCCTCTCCAAGTCGCC
ATCATCCAATCCCGTCTTGAACATCTTCACACTCTGTTCCCCAGTGAGAA
TGCCACCTCCATGGCTTACCGCCTCCCTGACCTGCTCCGCGTCGAACCCA
CCGACCTCGCGCACCGAGTGGCCGAGCGCCGAGTGCAACTTGAGGCCTTA
CTTCCCGCCTGTCGCCCCCTCCGTATGATGGCCAAGGTACCTGCTCTCGT
CTTCCAAGACTTTGACGCACAAACCAAGAAAGTTGCAGAGAACCTTCGAC
GGGAATTTCCCGAGATGGACCTAGCGCGGGTCGTGTACCAAAACCCCATT
GTCCTTGCCCGCGAATGGGACGCCGTCATCCTCCCAAAAATAACAGCCCT
CCGCGCCCTGTTCCCGAAGCAAGACCTCGGCAAAATGATTGCTCGTCGTC
CCGACCTCCTCTCACGAGACGTGGAAGGGAAAATGACAGAAAAACTTGCA
GGACTAGCCGCCCTCCTTCCCTCCGTCAACGTCCAAGAGCTCGTCGCCCG
CCAACCCGATCTCCTCGCCCGCGATCTCTCCCTCATCTCCTCCCGGATCA
AGCATCTCGAATCCCTCTTTCCTACCTCCATCCCTGGTGAGATTTTCACG
ATGATTAGCCGTAAACCCACTCTCCTACTTACCAACAGTGACCGTGTGAT
AGGCCCCAAACTGGGCCACCTCAAGCGCCTCCTCGGTTCGGCCGCCGCGC
TGGAACTCTGCCACGCGATGCCCACTATCTTCAATCGTGACCTAGATAAA
GTTGAAGAGCGCTTAGGGGCCTTGATCGCACACTTGCCTGGTATTGACGT
CGTCAGATTTTTGAAGTTAAACCCCGCGTTTTTGACTGAGCCCGAAGGAG
ACGTCAGTGGCCACTTGGCTGCCTTGCACACCGCCCTCCCTCCAGGGGTA
GAGCTCGCGAAGCTTCTCGCGCAAGAACCACAATTATACACGGAGAAAGC
GGCAGTCTTGGCGTTGAAGTTGAGGGAGGTCCGGGAGAGGACGGGCCTGG
AGGTAGAGGAGATGACGGTGCGACTAGGTAGGGATGCGAGATTTTTGATT
GTCCCTTATGGATTACTTGCGGCCCGTTTGCGTTTTTGGGCGGCCTGGCA
GCAGGTATCGGCGGAAGGAAAGGATGCAGAGGAAATGAAGGGGAAGCAGG
CAGGGGAAGAGGAGAGGAAGAAGGCGTTGAAAAGGATCAATCTGAGTTCG
TTGGTGGGCATGCCGTTGGACCGATTCGTGGCGCTCTATCCTGCCTACCC
TCACTACCTCGCCAGTAAGTTGGGGGGGGACTGGACGCCCGCTTTGGGAG
GCAATAATGCGTTTAGGCTTGAAAAGGTGTATTCGGGCGTGTTGTGGCGT
CAGACGGGGTTGGTGTATGAAAAGGCTCGTTTCACTGGTGACCATGGTGG
TGACCATGGTGGGGGCTACCATCAAGTGAATGGTGGAGGAGGGAGGCAAT
GGAAAAAGGGATCGCAGTATTCGAAGCAGCAATCACCGGGGAGGTCAAAA
CCATACAATGCGAAGCGTCCGGTCATGTCTCCTTAA
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protein sequence of NO03G03590.1

>NO03G03590.1-protein ID=NO03G03590.1-protein|Name=NO03G03590.1|organism=Nannochloropsis oceanica|type=polypeptide|length=612bp
MVNSTKLESRTQDMIMFGVALVVATTLMPGPSHAFVGLPRPAHHHRRRER
PWIQQSCFSVSPASASTTIPTLFPTPTPDDMAIYSDRLHALDMLAPLQVA
IIQSRLEHLHTLFPSENATSMAYRLPDLLRVEPTDLAHRVAERRVQLEAL
LPACRPLRMMAKVPALVFQDFDAQTKKVAENLRREFPEMDLARVVYQNPI
VLAREWDAVILPKITALRALFPKQDLGKMIARRPDLLSRDVEGKMTEKLA
GLAALLPSVNVQELVARQPDLLARDLSLISSRIKHLESLFPTSIPGEIFT
MISRKPTLLLTNSDRVIGPKLGHLKRLLGSAAALELCHAMPTIFNRDLDK
VEERLGALIAHLPGIDVVRFLKLNPAFLTEPEGDVSGHLAALHTALPPGV
ELAKLLAQEPQLYTEKAAVLALKLREVRERTGLEVEEMTVRLGRDARFLI
VPYGLLAARLRFWAAWQQVSAEGKDAEEMKGKQAGEEERKKALKRINLSS
LVGMPLDRFVALYPAYPHYLASKLGGDWTPALGGNNAFRLEKVYSGVLWR
QTGLVYEKARFTGDHGGDHGGGYHQVNGGGGRQWKKGSQYSKQQSPGRSK
PYNAKRPVMSP*
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mRNA from alignment at chr3:1066920..1068755+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO03G03590.1 ID=NO03G03590.1|Name=NO03G03590.1|organism=Nannochloropsis oceanica|type=mRNA|length=1836bp|location=Sequence derived from alignment at chr3:1066920..1068755+ (Nannochloropsis oceanica)
ATGGTTAACTCAACCAAGCTTGAGTCCAGGACTCAAGATATGATCATGTT
TGGCGTCGCCCTTGTGGTTGCCACCACCCTCATGCCAGGGCCGAGTCACG
CGTTTGTAGGCCTTCCGCGGCCAGCACACCATCACAGAAGAAGAGAACGG
CCATGGATACAGCAATCCTGTTTCTCGGTATCTCCCGCCTCCGCAAGCAC
TACGATCCCCACCCTGTTCCCCACTCCCACTCCAGATGACATGGCCATCT
ACTCCGACCGCCTTCATGCCCTCGACATGCTGGCCCCTCTCCAAGTCGCC
ATCATCCAATCCCGTCTTGAACATCTTCACACTCTGTTCCCCAGTGAGAA
TGCCACCTCCATGGCTTACCGCCTCCCTGACCTGCTCCGCGTCGAACCCA
CCGACCTCGCGCACCGAGTGGCCGAGCGCCGAGTGCAACTTGAGGCCTTA
CTTCCCGCCTGTCGCCCCCTCCGTATGATGGCCAAGGTACCTGCTCTCGT
CTTCCAAGACTTTGACGCACAAACCAAGAAAGTTGCAGAGAACCTTCGAC
GGGAATTTCCCGAGATGGACCTAGCGCGGGTCGTGTACCAAAACCCCATT
GTCCTTGCCCGCGAATGGGACGCCGTCATCCTCCCAAAAATAACAGCCCT
CCGCGCCCTGTTCCCGAAGCAAGACCTCGGCAAAATGATTGCTCGTCGTC
CCGACCTCCTCTCACGAGACGTGGAAGGGAAAATGACAGAAAAACTTGCA
GGACTAGCCGCCCTCCTTCCCTCCGTCAACGTCCAAGAGCTCGTCGCCCG
CCAACCCGATCTCCTCGCCCGCGATCTCTCCCTCATCTCCTCCCGGATCA
AGCATCTCGAATCCCTCTTTCCTACCTCCATCCCTGGTGAGATTTTCACG
ATGATTAGCCGTAAACCCACTCTCCTACTTACCAACAGTGACCGTGTGAT
AGGCCCCAAACTGGGCCACCTCAAGCGCCTCCTCGGTTCGGCCGCCGCGC
TGGAACTCTGCCACGCGATGCCCACTATCTTCAATCGTGACCTAGATAAA
GTTGAAGAGCGCTTAGGGGCCTTGATCGCACACTTGCCTGGTATTGACGT
CGTCAGATTTTTGAAGTTAAACCCCGCGTTTTTGACTGAGCCCGAAGGAG
ACGTCAGTGGCCACTTGGCTGCCTTGCACACCGCCCTCCCTCCAGGGGTA
GAGCTCGCGAAGCTTCTCGCGCAAGAACCACAATTATACACGGAGAAAGC
GGCAGTCTTGGCGTTGAAGTTGAGGGAGGTCCGGGAGAGGACGGGCCTGG
AGGTAGAGGAGATGACGGTGCGACTAGGTAGGGATGCGAGATTTTTGATT
GTCCCTTATGGATTACTTGCGGCCCGTTTGCGTTTTTGGGCGGCCTGGCA
GCAGGTATCGGCGGAAGGAAAGGATGCAGAGGAAATGAAGGGGAAGCAGG
CAGGGGAAGAGGAGAGGAAGAAGGCGTTGAAAAGGATCAATCTGAGTTCG
TTGGTGGGCATGCCGTTGGACCGATTCGTGGCGCTCTATCCTGCCTACCC
TCACTACCTCGCCAGTAAGTTGGGGGGGGACTGGACGCCCGCTTTGGGAG
GCAATAATGCGTTTAGGCTTGAAAAGGTGTATTCGGGCGTGTTGTGGCGT
CAGACGGGGTTGGTGTATGAAAAGGCTCGTTTCACTGGTGACCATGGTGG
TGACCATGGTGGGGGCTACCATCAAGTGAATGGTGGAGGAGGGAGGCAAT
GGAAAAAGGGATCGCAGTATTCGAAGCAGCAATCACCGGGGAGGTCAAAA
CCATACAATGCGAAGCGTCCGGTCATGTCTCCTTAA
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Coding sequence (CDS) from alignment at chr3:1066920..1068755+

>NO03G03590.1 ID=NO03G03590.1|Name=NO03G03590.1|organism=Nannochloropsis oceanica|type=CDS|length=1836bp|location=Sequence derived from alignment at chr3:1066920..1068755+ (Nannochloropsis oceanica)
ATGGTTAACTCAACCAAGCTTGAGTCCAGGACTCAAGATATGATCATGTT
TGGCGTCGCCCTTGTGGTTGCCACCACCCTCATGCCAGGGCCGAGTCACG
CGTTTGTAGGCCTTCCGCGGCCAGCACACCATCACAGAAGAAGAGAACGG
CCATGGATACAGCAATCCTGTTTCTCGGTATCTCCCGCCTCCGCAAGCAC
TACGATCCCCACCCTGTTCCCCACTCCCACTCCAGATGACATGGCCATCT
ACTCCGACCGCCTTCATGCCCTCGACATGCTGGCCCCTCTCCAAGTCGCC
ATCATCCAATCCCGTCTTGAACATCTTCACACTCTGTTCCCCAGTGAGAA
TGCCACCTCCATGGCTTACCGCCTCCCTGACCTGCTCCGCGTCGAACCCA
CCGACCTCGCGCACCGAGTGGCCGAGCGCCGAGTGCAACTTGAGGCCTTA
CTTCCCGCCTGTCGCCCCCTCCGTATGATGGCCAAGGTACCTGCTCTCGT
CTTCCAAGACTTTGACGCACAAACCAAGAAAGTTGCAGAGAACCTTCGAC
GGGAATTTCCCGAGATGGACCTAGCGCGGGTCGTGTACCAAAACCCCATT
GTCCTTGCCCGCGAATGGGACGCCGTCATCCTCCCAAAAATAACAGCCCT
CCGCGCCCTGTTCCCGAAGCAAGACCTCGGCAAAATGATTGCTCGTCGTC
CCGACCTCCTCTCACGAGACGTGGAAGGGAAAATGACAGAAAAACTTGCA
GGACTAGCCGCCCTCCTTCCCTCCGTCAACGTCCAAGAGCTCGTCGCCCG
CCAACCCGATCTCCTCGCCCGCGATCTCTCCCTCATCTCCTCCCGGATCA
AGCATCTCGAATCCCTCTTTCCTACCTCCATCCCTGGTGAGATTTTCACG
ATGATTAGCCGTAAACCCACTCTCCTACTTACCAACAGTGACCGTGTGAT
AGGCCCCAAACTGGGCCACCTCAAGCGCCTCCTCGGTTCGGCCGCCGCGC
TGGAACTCTGCCACGCGATGCCCACTATCTTCAATCGTGACCTAGATAAA
GTTGAAGAGCGCTTAGGGGCCTTGATCGCACACTTGCCTGGTATTGACGT
CGTCAGATTTTTGAAGTTAAACCCCGCGTTTTTGACTGAGCCCGAAGGAG
ACGTCAGTGGCCACTTGGCTGCCTTGCACACCGCCCTCCCTCCAGGGGTA
GAGCTCGCGAAGCTTCTCGCGCAAGAACCACAATTATACACGGAGAAAGC
GGCAGTCTTGGCGTTGAAGTTGAGGGAGGTCCGGGAGAGGACGGGCCTGG
AGGTAGAGGAGATGACGGTGCGACTAGGTAGGGATGCGAGATTTTTGATT
GTCCCTTATGGATTACTTGCGGCCCGTTTGCGTTTTTGGGCGGCCTGGCA
GCAGGTATCGGCGGAAGGAAAGGATGCAGAGGAAATGAAGGGGAAGCAGG
CAGGGGAAGAGGAGAGGAAGAAGGCGTTGAAAAGGATCAATCTGAGTTCG
TTGGTGGGCATGCCGTTGGACCGATTCGTGGCGCTCTATCCTGCCTACCC
TCACTACCTCGCCAGTAAGTTGGGGGGGGACTGGACGCCCGCTTTGGGAG
GCAATAATGCGTTTAGGCTTGAAAAGGTGTATTCGGGCGTGTTGTGGCGT
CAGACGGGGTTGGTGTATGAAAAGGCTCGTTTCACTGGTGACCATGGTGG
TGACCATGGTGGGGGCTACCATCAAGTGAATGGTGGAGGAGGGAGGCAAT
GGAAAAAGGGATCGCAGTATTCGAAGCAGCAATCACCGGGGAGGTCAAAA
CCATACAATGCGAAGCGTCCGGTCATGTCTCCTTAA
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Synonyms
Publications