NO03G03570.1, NO03G03570.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO03G03570.1
Unique NameNO03G03570.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1340
Alignment locationchr3:1064056..1065395 -

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:1064056..1065395 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO03G03570.1 vs.
Match: EWM29784.1 (methionyl-trna [Nannochloropsis gaditana])

HSP 1 Score: 492.7 bits (1267), Expect = 1.200e-135
Identity = 268/441 (60.77%), Postives = 314/441 (71.20%), Query Frame = 0 
Query:    1 MAPASATLLKWLSSGLA------RIEWVDKEEMTVKVEGDVVKEPNAVARAVAKAVCPALVGVLPAEHAQVVQWQSWSTDTSDVFAAAVELNTFLEGRSFLVGTAPTLADIQVYWALAPGVKLTFPGPLGGLVALMRWFDFMQHSLRQEA---AFDATLLPALVPLHSIYKPVSMPVYDRKKAGESPGAQEP--NGKVAPAVES-------TKGGPVKKGKDASPAATATSSGS--AQSAGDKANKKHMQQDAEKQEKEKGNKAAGKGASDPTVEGGGGGAAAAAAAENPNALDIRVGRMVKVWPHPEAEKLYCEEIDCGEEGGPRQIASGLRQFYSEAAELEGRLVLVLANLKPRKLVGFASNGMVLCASNDEHTEVKIVEPPAGAKVGDRVVFHGFPREGLPLTPAQVQKKKVFETLAPGLMTDGKGVCVYKVASHPFW 422
            MAPAS  +LKWL++GL       ++ W D+E   ++ +GD++KEPN VARA+AKAV P L GVLP E  QVVQWQSW+++T D+   AVELNTFLEGRSFLVG APTLADIQ+YWALA  V L+FPGPLGG VALMRWFD +Q+ LR  A   ++D T LP LVP+HSI+KPV+MPVYDR K  E  GA      G    +VES        KG   + G+    AA++   G+  AQS G K+ KK        +E     +  GKG + P               ENPNALDIRVGR+VKVWPHPEAEKLYCEEIDCGEE GPRQIASGLRQFYS A+ELEGR+VLVLANLKPRKLVGFASNGMVLCAS+ EHT+VK+VEPPA AKVGDRVVF GF  E +PLTPAQVQKKKVFE LA GL TD +G C++K  +HPFW
Sbjct:    1 MAPASPCMLKWLATGLPHATTEHKVHWEDEEHFVLRADGDIIKEPNTVARAIAKAVTPELTGVLPVEQGQVVQWQSWASETEDILGRAVELNTFLEGRSFLVGAAPTLADIQMYWALAKVVALSFPGPLGGSVALMRWFDQIQNCLRVGAFAMSYDVTHLPQLVPMHSIFKPVAMPVYDRSKGQERVGAAASAHEGGGTASVESKGEAAAKAKGARQRDGETGEKAASSDGIGNHHAQSQGKKSKKK--------EEPAPATETLGKGETAP--------------TENPNALDIRVGRLVKVWPHPEAEKLYCEEIDCGEESGPRQIASGLRQFYSAASELEGRMVLVLANLKPRKLVGFASNGMVLCASDTEHTQVKLVEPPAHAKVGDRVVFPGFSTESMPLTPAQVQKKKVFEALAAGLKTDSQGRCIFKDETHPFW 419
The following BLAST results are available for this feature:
BLAST of NO03G03570.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29784.11.200e-13560.77methionyl-trna [Nannochloropsis gaditana][more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO03G03570NO03G03570Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO03G03570.1NO03G03570.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO03G03570.1.cds1NO03G03570.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO03G03570.1 ID=NO03G03570.1|Name=NO03G03570.1|organism=Nannochloropsis oceanica|type=mRNA|length=1340bp
ACAGGCAGCACTCTCGGCACAACCTAGCTGTCATGGCTCCGGCATCCGCG
ACCCTGCTGAAGTGGTTGTCCTCGGGACTTGCTAGAATTGAGTGGGTGGA
TAAGGAAGAAATGACGGTCAAGGTCGAGGGGGATGTGGTCAAGGAGCCGA
ATGCCGTCGCCCGTGCAGTGGCCAAGGCAGTATGCCCGGCCCTCGTGGGT
GTTCTGCCGGCGGAGCATGCACAGGTGGTGCAATGGCAGTCCTGGTCGAC
CGATACATCGGACGTTTTCGCTGCGGCAGTCGAACTCAACACGTTCCTGG
AGGGCCGTTCATTCCTGGTGGGCACGGCGCCAACCCTGGCGGATATTCAA
GTGTACTGGGCCTTGGCACCGGGCGTGAAGCTCACGTTTCCTGGCCCACT
GGGTGGGTTGGTGGCCTTAATGCGTTGGTTTGATTTTATGCAGCACTCAT
TGCGACAAGAAGCTGCTTTTGACGCGACTCTCCTCCCCGCTCTCGTCCCG
CTCCATTCCATTTACAAACCTGTTTCAATGCCTGTATATGACAGAAAGAA
GGCGGGAGAGAGCCCGGGAGCACAGGAACCGAATGGAAAAGTCGCGCCCG
CGGTAGAAAGTACCAAGGGGGGGCCTGTGAAGAAGGGCAAAGATGCCTCT
CCTGCAGCCACCGCCACATCTTCTGGCAGTGCCCAAAGTGCGGGCGACAA
GGCGAATAAGAAACATATGCAGCAGGACGCTGAAAAGCAGGAAAAGGAGA
AGGGCAACAAAGCTGCGGGGAAGGGTGCGTCCGACCCGACAGTCGAAGGA
GGAGGAGGAGGAGCAGCAGCAGCAGCAGCAGCAGAGAATCCAAACGCTCT
TGACATCCGTGTGGGTAGAATGGTCAAAGTGTGGCCGCATCCTGAAGCTG
AGAAACTCTATTGCGAGGAGATTGATTGTGGGGAGGAGGGTGGGCCGCGA
CAGATTGCGTCGGGGTTACGTCAGTTTTATTCAGAGGCTGCGGAGCTCGA
GGGACGGTTGGTGTTGGTCTTGGCGAACCTGAAACCGAGAAAATTGGTCG
GATTTGCCAGTAATGGCATGGTGTTGTGCGCATCAAATGATGAGCATACA
GAGGTGAAGATTGTGGAGCCTCCGGCTGGTGCCAAGGTGGGGGATCGCGT
TGTGTTCCATGGCTTTCCTAGGGAGGGCTTGCCATTGACGCCCGCGCAAG
TGCAGAAGAAGAAGGTGTTTGAGACGTTGGCACCGGGGTTGATGACGGAT
GGAAAGGGGGTGTGTGTTTATAAGGTGGCGAGCCATCCGTTTTGGGTGGG
GGAGGAGGGGGGGGGGGGGGGCCTTGCACCGCGCCCTTGA
back to top

protein sequence of NO03G03570.1

>NO03G03570.1-protein ID=NO03G03570.1-protein|Name=NO03G03570.1|organism=Nannochloropsis oceanica|type=polypeptide|length=436bp
MAPASATLLKWLSSGLARIEWVDKEEMTVKVEGDVVKEPNAVARAVAKAV
CPALVGVLPAEHAQVVQWQSWSTDTSDVFAAAVELNTFLEGRSFLVGTAP
TLADIQVYWALAPGVKLTFPGPLGGLVALMRWFDFMQHSLRQEAAFDATL
LPALVPLHSIYKPVSMPVYDRKKAGESPGAQEPNGKVAPAVESTKGGPVK
KGKDASPAATATSSGSAQSAGDKANKKHMQQDAEKQEKEKGNKAAGKGAS
DPTVEGGGGGAAAAAAAENPNALDIRVGRMVKVWPHPEAEKLYCEEIDCG
EEGGPRQIASGLRQFYSEAAELEGRLVLVLANLKPRKLVGFASNGMVLCA
SNDEHTEVKIVEPPAGAKVGDRVVFHGFPREGLPLTPAQVQKKKVFETLA
PGLMTDGKGVCVYKVASHPFWVGEEGGGGGLAPRP*
back to top

mRNA from alignment at chr3:1064056..1065395-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO03G03570.1 ID=NO03G03570.1|Name=NO03G03570.1|organism=Nannochloropsis oceanica|type=mRNA|length=1340bp|location=Sequence derived from alignment at chr3:1064056..1065395- (Nannochloropsis oceanica)
ACAGGCAGCACTCTCGGCACAACCTAGCTGTCATGGCTCCGGCATCCGCG
ACCCTGCTGAAGTGGTTGTCCTCGGGACTTGCTAGAATTGAGTGGGTGGA
TAAGGAAGAAATGACGGTCAAGGTCGAGGGGGATGTGGTCAAGGAGCCGA
ATGCCGTCGCCCGTGCAGTGGCCAAGGCAGTATGCCCGGCCCTCGTGGGT
GTTCTGCCGGCGGAGCATGCACAGGTGGTGCAATGGCAGTCCTGGTCGAC
CGATACATCGGACGTTTTCGCTGCGGCAGTCGAACTCAACACGTTCCTGG
AGGGCCGTTCATTCCTGGTGGGCACGGCGCCAACCCTGGCGGATATTCAA
GTGTACTGGGCCTTGGCACCGGGCGTGAAGCTCACGTTTCCTGGCCCACT
GGGTGGGTTGGTGGCCTTAATGCGTTGGTTTGATTTTATGCAGCACTCAT
TGCGACAAGAAGCTGCTTTTGACGCGACTCTCCTCCCCGCTCTCGTCCCG
CTCCATTCCATTTACAAACCTGTTTCAATGCCTGTATATGACAGAAAGAA
GGCGGGAGAGAGCCCGGGAGCACAGGAACCGAATGGAAAAGTCGCGCCCG
CGGTAGAAAGTACCAAGGGGGGGCCTGTGAAGAAGGGCAAAGATGCCTCT
CCTGCAGCCACCGCCACATCTTCTGGCAGTGCCCAAAGTGCGGGCGACAA
GGCGAATAAGAAACATATGCAGCAGGACGCTGAAAAGCAGGAAAAGGAGA
AGGGCAACAAAGCTGCGGGGAAGGGTGCGTCCGACCCGACAGTCGAAGGA
GGAGGAGGAGGAGCAGCAGCAGCAGCAGCAGCAGAGAATCCAAACGCTCT
TGACATCCGTGTGGGTAGAATGGTCAAAGTGTGGCCGCATCCTGAAGCTG
AGAAACTCTATTGCGAGGAGATTGATTGTGGGGAGGAGGGTGGGCCGCGA
CAGATTGCGTCGGGGTTACGTCAGTTTTATTCAGAGGCTGCGGAGCTCGA
GGGACGGTTGGTGTTGGTCTTGGCGAACCTGAAACCGAGAAAATTGGTCG
GATTTGCCAGTAATGGCATGGTGTTGTGCGCATCAAATGATGAGCATACA
GAGGTGAAGATTGTGGAGCCTCCGGCTGGTGCCAAGGTGGGGGATCGCGT
TGTGTTCCATGGCTTTCCTAGGGAGGGCTTGCCATTGACGCCCGCGCAAG
TGCAGAAGAAGAAGGTGTTTGAGACGTTGGCACCGGGGTTGATGACGGAT
GGAAAGGGGGTGTGTGTTTATAAGGTGGCGAGCCATCCGTTTTGGGTGGG
GGAGGAGGGGGGGGGGGGGGGCCTTGCACCGCGCCCTTGA
back to top

Coding sequence (CDS) from alignment at chr3:1064056..1065395-

>NO03G03570.1 ID=NO03G03570.1|Name=NO03G03570.1|organism=Nannochloropsis oceanica|type=CDS|length=1308bp|location=Sequence derived from alignment at chr3:1064056..1065395- (Nannochloropsis oceanica)
ATGGCTCCGGCATCCGCGACCCTGCTGAAGTGGTTGTCCTCGGGACTTGC
TAGAATTGAGTGGGTGGATAAGGAAGAAATGACGGTCAAGGTCGAGGGGG
ATGTGGTCAAGGAGCCGAATGCCGTCGCCCGTGCAGTGGCCAAGGCAGTA
TGCCCGGCCCTCGTGGGTGTTCTGCCGGCGGAGCATGCACAGGTGGTGCA
ATGGCAGTCCTGGTCGACCGATACATCGGACGTTTTCGCTGCGGCAGTCG
AACTCAACACGTTCCTGGAGGGCCGTTCATTCCTGGTGGGCACGGCGCCA
ACCCTGGCGGATATTCAAGTGTACTGGGCCTTGGCACCGGGCGTGAAGCT
CACGTTTCCTGGCCCACTGGGTGGGTTGGTGGCCTTAATGCGTTGGTTTG
ATTTTATGCAGCACTCATTGCGACAAGAAGCTGCTTTTGACGCGACTCTC
CTCCCCGCTCTCGTCCCGCTCCATTCCATTTACAAACCTGTTTCAATGCC
TGTATATGACAGAAAGAAGGCGGGAGAGAGCCCGGGAGCACAGGAACCGA
ATGGAAAAGTCGCGCCCGCGGTAGAAAGTACCAAGGGGGGGCCTGTGAAG
AAGGGCAAAGATGCCTCTCCTGCAGCCACCGCCACATCTTCTGGCAGTGC
CCAAAGTGCGGGCGACAAGGCGAATAAGAAACATATGCAGCAGGACGCTG
AAAAGCAGGAAAAGGAGAAGGGCAACAAAGCTGCGGGGAAGGGTGCGTCC
GACCCGACAGTCGAAGGAGGAGGAGGAGGAGCAGCAGCAGCAGCAGCAGC
AGAGAATCCAAACGCTCTTGACATCCGTGTGGGTAGAATGGTCAAAGTGT
GGCCGCATCCTGAAGCTGAGAAACTCTATTGCGAGGAGATTGATTGTGGG
GAGGAGGGTGGGCCGCGACAGATTGCGTCGGGGTTACGTCAGTTTTATTC
AGAGGCTGCGGAGCTCGAGGGACGGTTGGTGTTGGTCTTGGCGAACCTGA
AACCGAGAAAATTGGTCGGATTTGCCAGTAATGGCATGGTGTTGTGCGCA
TCAAATGATGAGCATACAGAGGTGAAGATTGTGGAGCCTCCGGCTGGTGC
CAAGGTGGGGGATCGCGTTGTGTTCCATGGCTTTCCTAGGGAGGGCTTGC
CATTGACGCCCGCGCAAGTGCAGAAGAAGAAGGTGTTTGAGACGTTGGCA
CCGGGGTTGATGACGGATGGAAAGGGGGTGTGTGTTTATAAGGTGGCGAG
CCATCCGTTTTGGGTGGGGGAGGAGGGGGGGGGGGGGGGCCTTGCACCGC
GCCCTTGA
back to top
Synonyms
Publications