NO03G03560.1, NO03G03560.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO03G03560.1
Unique NameNO03G03560.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1563
Alignment locationchr3:1062355..1063917 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:1062355..1063917 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO03G03560.1 vs.
Match: XP_005856179.1 (guanylate kinase, partial [Nannochloropsis gaditana CCMP526]; EKU20183.1 guanylate kinase, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 380.9 bits (977), Expect = 4.700e-102
Identity = 221/351 (62.96%), Postives = 251/351 (71.51%), Query Frame = 0 
Query:   46 VYLASHMGLSSLSSLPSVQTLSAACRLRVASSISASVSSLRRPRPSSAALSVLYTACIFSLNAYTTGSAAVSPSRTSSSSSPGFACQSGTVFFSSSSASSSASACSTRRHLMTRGSSSSSNGNGGSIATIKGMTSSLSCSSLDQPVEGLAMRRPLIITGPSGVGKGTLIRRLLGEYPARFGFSCSHTTRGPRPGEQHGIDYFFTTREKLQAEIDEGKFLEHATVHNNLYGTSFDAVREVQDDGKICVLDIDVQGVLSVKKAAAMGLVHDLRPIYVFISPPSLEVLEKRLRGRETEKEEDVLRRLGNARRELEYGCAKGNFDKIVVNGEFDEAYRDLVGYIERMYYGEEGVE 397
            V     MG SSLS  P                  A V   RRP P      VLYTAC+  L AY T SA  + S ++   S GFAC S     SS   S S+    TRR+ MT G S S +G   S      M SS S SSLDQPV+ +A+RRPLIITGPSGVGKGTLIRRLLGEYP RFGFSCSHTTRGPRPGE+ G+DYFFTTRE+LQAEIDEGKFLEHATVHNNLYGTSF+A+++VQ++GKIC+LDIDVQGV+SVK A A G +HDLRP+YVFISPPSL VLE RLRGRETEKEEDVLRRL NA+RE+EYG A GNFDK+VVN + D+AY DL  YIE MYYG+E V+
Sbjct:    4 VAAGGRMGYSSLSFFPV-----------------AYVERHRRPAP----FRVLYTACLIVLKAYHT-SALNNFSASNPPFSSGFACLSS----SSKDVSPSSPPRLTRRNFMTHGGSGSEHGTASS-----SMASSASSSSLDQPVDRMAVRRPLIITGPSGVGKGTLIRRLLGEYPLRFGFSCSHTTRGPRPGEKEGVDYFFTTRERLQAEIDEGKFLEHATVHNNLYGTSFEAIQKVQEEGKICILDIDVQGVISVKGALARGALHDLRPLYVFISPPSLAVLESRLRGRETEKEEDVLRRLKNAKREVEYGVAPGNFDKVVVNADLDDAYIDLRTYIETMYYGDEEVQ 323
The following BLAST results are available for this feature:
BLAST of NO03G03560.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005856179.14.700e-10262.96guanylate kinase, partial [Nannochloropsis gaditan... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO03G03560NO03G03560Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO03G03560.1NO03G03560.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO03G03560.1.cds1NO03G03560.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO03G03560.1 ID=NO03G03560.1|Name=NO03G03560.1|organism=Nannochloropsis oceanica|type=mRNA|length=1563bp
GTAAAGGTGTGGTCATAGGCGAGTGAGTGTCTGGTTTGAGGCTTGGCAAG
AGTGTTGGGTAGTAGGGCCCATTCTCTGAAAAAAGGGGAATAGTGGCGTG
CATCGCTGTTAAGGCGCTTCACTGCCTCCGCCATTTCCAGTCGCACTAGA
GGCTTATCTAGAATGAGAAGCCTGCGGTCATGTATATGAGGTGGCGGTGT
GAGGGATGATAATTGCATGCAAAGCACTATTTTCAATTCCGCTCGTCGGC
GCGTTGGCCTTGCCGTTTTTCACCTCAGTCCTCAACAAGGAGTCCACATC
ACAGGAAAATCCCCTCACACAACTCACCCACACAGGCTTGGTCTACCTAG
CTAGCCATATGGGATTGTCTTCGTTGTCGTCTTTGCCTTCTGTTCAAACA
CTTTCTGCCGCCTGCCGTCTACGAGTCGCCTCGTCAATCTCAGCCTCCGT
GTCCTCCTTGCGCCGCCCACGTCCCAGCAGTGCGGCCTTAAGTGTGCTCT
ACACCGCTTGCATTTTTAGCCTCAACGCCTACACAACCGGCAGCGCCGCT
GTTTCTCCTTCCAGAACCTCCTCGTCGTCGTCGCCGGGCTTCGCGTGCCA
GAGTGGCACAGTCTTCTTTTCTTCCTCCTCCGCTTCTTCCTCTGCCTCCG
CTTGCTCTACTCGGCGGCACCTCATGACTCGCGGCAGCAGCAGCAGTAGC
AACGGCAATGGCGGAAGCATTGCTACTATTAAGGGTATGACCAGCAGTTT
GAGCTGTAGCAGCCTTGATCAGCCCGTAGAGGGGTTGGCGATGCGTCGAC
CTCTCATTATTACCGGCCCCTCGGGCGTGGGCAAAGGGACACTTATCCGC
CGTTTGCTGGGGGAATATCCTGCGCGCTTTGGGTTTTCCTGCAGCCATAC
CACTCGGGGACCCCGTCCAGGGGAACAACATGGAATCGATTACTTTTTTA
CGACCCGGGAGAAATTACAAGCGGAGATTGATGAGGGCAAGTTTTTGGAG
CATGCAACCGTCCATAACAACTTGTATGGGACGAGCTTTGACGCTGTGAG
GGAGGTACAAGACGATGGAAAGATTTGTGTGTTGGACATTGATGTGCAGG
GTGTGTTGTCGGTAAAAAAGGCGGCGGCAATGGGGTTGGTGCATGACTTA
AGGCCGATTTACGTTTTTATTTCCCCTCCGTCGTTGGAGGTGTTGGAGAA
GAGGCTGCGGGGCAGAGAGACAGAAAAGGAGGAGGATGTCCTGCGTAGGC
TTGGGAATGCAAGGAGAGAGCTAGAGTATGGGTGTGCCAAGGGGAATTTC
GATAAGATTGTGGTGAATGGAGAGTTCGACGAGGCGTATAGGGATTTAGT
TGGGTATATTGAGAGAATGTATTATGGTGAAGAGGGCGTAGAGGAACAAA
AGTAGTGGTGATGGGGATAGTTAAAAATAAACAGAACGAGAAATTACAGT
GGTGTGGAGGGAAAGTTATGATGTGAAGGAATGCAGCAGCCTCAAGATGG
AAGGAGCGCACCCGCAACAAAAAACAACAAATACTGTTACAAACAGCAAC
GACAGCAGCAACA
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protein sequence of NO03G03560.1

>NO03G03560.1-protein ID=NO03G03560.1-protein|Name=NO03G03560.1|organism=Nannochloropsis oceanica|type=polypeptide|length=400bp
MIIACKALFSIPLVGALALPFFTSVLNKESTSQENPLTQLTHTGLVYLAS
HMGLSSLSSLPSVQTLSAACRLRVASSISASVSSLRRPRPSSAALSVLYT
ACIFSLNAYTTGSAAVSPSRTSSSSSPGFACQSGTVFFSSSSASSSASAC
STRRHLMTRGSSSSSNGNGGSIATIKGMTSSLSCSSLDQPVEGLAMRRPL
IITGPSGVGKGTLIRRLLGEYPARFGFSCSHTTRGPRPGEQHGIDYFFTT
REKLQAEIDEGKFLEHATVHNNLYGTSFDAVREVQDDGKICVLDIDVQGV
LSVKKAAAMGLVHDLRPIYVFISPPSLEVLEKRLRGRETEKEEDVLRRLG
NARRELEYGCAKGNFDKIVVNGEFDEAYRDLVGYIERMYYGEEGVEEQK*
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mRNA from alignment at chr3:1062355..1063917+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO03G03560.1 ID=NO03G03560.1|Name=NO03G03560.1|organism=Nannochloropsis oceanica|type=mRNA|length=1563bp|location=Sequence derived from alignment at chr3:1062355..1063917+ (Nannochloropsis oceanica)
GTAAAGGTGTGGTCATAGGCGAGTGAGTGTCTGGTTTGAGGCTTGGCAAG
AGTGTTGGGTAGTAGGGCCCATTCTCTGAAAAAAGGGGAATAGTGGCGTG
CATCGCTGTTAAGGCGCTTCACTGCCTCCGCCATTTCCAGTCGCACTAGA
GGCTTATCTAGAATGAGAAGCCTGCGGTCATGTATATGAGGTGGCGGTGT
GAGGGATGATAATTGCATGCAAAGCACTATTTTCAATTCCGCTCGTCGGC
GCGTTGGCCTTGCCGTTTTTCACCTCAGTCCTCAACAAGGAGTCCACATC
ACAGGAAAATCCCCTCACACAACTCACCCACACAGGCTTGGTCTACCTAG
CTAGCCATATGGGATTGTCTTCGTTGTCGTCTTTGCCTTCTGTTCAAACA
CTTTCTGCCGCCTGCCGTCTACGAGTCGCCTCGTCAATCTCAGCCTCCGT
GTCCTCCTTGCGCCGCCCACGTCCCAGCAGTGCGGCCTTAAGTGTGCTCT
ACACCGCTTGCATTTTTAGCCTCAACGCCTACACAACCGGCAGCGCCGCT
GTTTCTCCTTCCAGAACCTCCTCGTCGTCGTCGCCGGGCTTCGCGTGCCA
GAGTGGCACAGTCTTCTTTTCTTCCTCCTCCGCTTCTTCCTCTGCCTCCG
CTTGCTCTACTCGGCGGCACCTCATGACTCGCGGCAGCAGCAGCAGTAGC
AACGGCAATGGCGGAAGCATTGCTACTATTAAGGGTATGACCAGCAGTTT
GAGCTGTAGCAGCCTTGATCAGCCCGTAGAGGGGTTGGCGATGCGTCGAC
CTCTCATTATTACCGGCCCCTCGGGCGTGGGCAAAGGGACACTTATCCGC
CGTTTGCTGGGGGAATATCCTGCGCGCTTTGGGTTTTCCTGCAGCCATAC
CACTCGGGGACCCCGTCCAGGGGAACAACATGGAATCGATTACTTTTTTA
CGACCCGGGAGAAATTACAAGCGGAGATTGATGAGGGCAAGTTTTTGGAG
CATGCAACCGTCCATAACAACTTGTATGGGACGAGCTTTGACGCTGTGAG
GGAGGTACAAGACGATGGAAAGATTTGTGTGTTGGACATTGATGTGCAGG
GTGTGTTGTCGGTAAAAAAGGCGGCGGCAATGGGGTTGGTGCATGACTTA
AGGCCGATTTACGTTTTTATTTCCCCTCCGTCGTTGGAGGTGTTGGAGAA
GAGGCTGCGGGGCAGAGAGACAGAAAAGGAGGAGGATGTCCTGCGTAGGC
TTGGGAATGCAAGGAGAGAGCTAGAGTATGGGTGTGCCAAGGGGAATTTC
GATAAGATTGTGGTGAATGGAGAGTTCGACGAGGCGTATAGGGATTTAGT
TGGGTATATTGAGAGAATGTATTATGGTGAAGAGGGCGTAGAGGAACAAA
AGTAGTGGTGATGGGGATAGTTAAAAATAAACAGAACGAGAAATTACAGT
GGTGTGGAGGGAAAGTTATGATGTGAAGGAATGCAGCAGCCTCAAGATGG
AAGGAGCGCACCCGCAACAAAAAACAACAAATACTGTTACAAACAGCAAC
GACAGCAGCAACA
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Coding sequence (CDS) from alignment at chr3:1062355..1063917+

>NO03G03560.1 ID=NO03G03560.1|Name=NO03G03560.1|organism=Nannochloropsis oceanica|type=CDS|length=1200bp|location=Sequence derived from alignment at chr3:1062355..1063917+ (Nannochloropsis oceanica)
ATGATAATTGCATGCAAAGCACTATTTTCAATTCCGCTCGTCGGCGCGTT
GGCCTTGCCGTTTTTCACCTCAGTCCTCAACAAGGAGTCCACATCACAGG
AAAATCCCCTCACACAACTCACCCACACAGGCTTGGTCTACCTAGCTAGC
CATATGGGATTGTCTTCGTTGTCGTCTTTGCCTTCTGTTCAAACACTTTC
TGCCGCCTGCCGTCTACGAGTCGCCTCGTCAATCTCAGCCTCCGTGTCCT
CCTTGCGCCGCCCACGTCCCAGCAGTGCGGCCTTAAGTGTGCTCTACACC
GCTTGCATTTTTAGCCTCAACGCCTACACAACCGGCAGCGCCGCTGTTTC
TCCTTCCAGAACCTCCTCGTCGTCGTCGCCGGGCTTCGCGTGCCAGAGTG
GCACAGTCTTCTTTTCTTCCTCCTCCGCTTCTTCCTCTGCCTCCGCTTGC
TCTACTCGGCGGCACCTCATGACTCGCGGCAGCAGCAGCAGTAGCAACGG
CAATGGCGGAAGCATTGCTACTATTAAGGGTATGACCAGCAGTTTGAGCT
GTAGCAGCCTTGATCAGCCCGTAGAGGGGTTGGCGATGCGTCGACCTCTC
ATTATTACCGGCCCCTCGGGCGTGGGCAAAGGGACACTTATCCGCCGTTT
GCTGGGGGAATATCCTGCGCGCTTTGGGTTTTCCTGCAGCCATACCACTC
GGGGACCCCGTCCAGGGGAACAACATGGAATCGATTACTTTTTTACGACC
CGGGAGAAATTACAAGCGGAGATTGATGAGGGCAAGTTTTTGGAGCATGC
AACCGTCCATAACAACTTGTATGGGACGAGCTTTGACGCTGTGAGGGAGG
TACAAGACGATGGAAAGATTTGTGTGTTGGACATTGATGTGCAGGGTGTG
TTGTCGGTAAAAAAGGCGGCGGCAATGGGGTTGGTGCATGACTTAAGGCC
GATTTACGTTTTTATTTCCCCTCCGTCGTTGGAGGTGTTGGAGAAGAGGC
TGCGGGGCAGAGAGACAGAAAAGGAGGAGGATGTCCTGCGTAGGCTTGGG
AATGCAAGGAGAGAGCTAGAGTATGGGTGTGCCAAGGGGAATTTCGATAA
GATTGTGGTGAATGGAGAGTTCGACGAGGCGTATAGGGATTTAGTTGGGT
ATATTGAGAGAATGTATTATGGTGAAGAGGGCGTAGAGGAACAAAAGTAG
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Synonyms
Publications