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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| chr3 | genome | chr3:1059754..1062348 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO03G03550.1 vs.
Match: EWM29849.1 (Major facilitator superfamily domain, general substrate transporter [Nannochloropsis gaditana]) HSP 1 Score: 657.9 bits (1696), Expect = 3.900e-185 Identity = 356/563 (63.23%), Postives = 428/563 (76.02%), Query Frame = 0
Query: 211 VSSMTVVIAAWGTSLTHAVNERASLYTIDAIMDLFGFCAGVLITAVGTPAKTGVALAFIFLFQNLLLVSFLRDEQVT--TGATAGGAARRHHVAETAIQVPFIAGLHMSFENKEFLTLFKAALFGSIVGTTVNLLPIFFQVVMRIGDDAIESVYSIYAQLVIISAFFAVLSTATLNARWGKIRTLQFGVGCGAVYGLIAFCASYASVVELFYLSSVPAGMFAGIVAVNGNVLLSNSIDYDQLKTGFRRQSLYQCLIYVPMTFVSVAGSSIPLSIITAFGGLEAGQTPPSAVVLTLRLWVSLVVTGCLLASYRQLSAFKLTEAVQQDVSAQLRRREQGQFLPPRDPIQEEEDESGENTLGVEGEIELSQDVKAGENSSSGGVNGISSSGEGKVRVDVEVENDPPSA-SVNGPWYPMVAFLELNFSSQELALLTLDNGKQWKLGTYLLNLLACAFYAVILFVQTVVAVDQRDDLTGAMIFVCFLMLASSVAIYEGGRFHAMKEVYYMGDGRDVARWARQRLTARKNVRPWVLYNPFRLVLRTVIAHVGFSIVLLSVVFSLHLPLK 771
+S+MTVVIAAWGTSLTHAV+ERASLYTIDA+ DL GF GV ITA GTPA TG+ALA IF+FQNLLLV LRD+ +T TG TA + + T +QVPFIAGLHMSF+NK+F+ LFKAA+FGSIVGTTVNLLPIFFQVVM + D +++ VY IY Q V+ SAF AVL+ LNARWGKI L+FGV CG++YGL+AF ASYA VE FYL+SVPAG+F G V VNGNVLLSNSIDYDQLKTGFRRQSLYQCL+YVP+TFVSVAGSSIPLSIITAFGGLEAG PP+AV+ TLRLW+SL+VTGCL+ S LS FKLTEAVQ+D+SAQL+ REQG LPPRDP+QE E E +E + ++ G + V+ G+V V+ E D S+ + G W+ +FL+LNFSS ELALL GKQWKL TYLLN++A A YA++L V+T+ A+DQR DLTGA +F F MLASS+ IYEGGR HAMKE+Y MGD + VARWAR+RL+ARK++R VL NPFRLV R ++AH SI L+ V+ SL P++
Sbjct: 1 MSAMTVVIAAWGTSLTHAVHERASLYTIDALADLLGFLVGVAITAAGTPATTGLALAVIFIFQNLLLVRVLRDDPITPSTGTTATEGS-----SSTLVQVPFIAGLHMSFDNKQFVALFKAAVFGSIVGTTVNLLPIFFQVVMNVPDSSLKRVYGIYVQAVVASAFVAVLAVGRLNARWGKICVLRFGVACGSLYGLLAFFASYARTVEWFYLTSVPAGLFVGTVTVNGNVLLSNSIDYDQLKTGFRRQSLYQCLMYVPLTFVSVAGSSIPLSIITAFGGLEAGHAPPAAVIQTLRLWISLIVTGCLIVSNNYLSNFKLTEAVQEDISAQLQLREQGNLLPPRDPLQENEPHKNE-------AVERAGNLPCGTCKGATDVSEKRGVDPGEVCAAVDAELDMSSSMTAAGLWHCTNSFLDLNFSSSELALLATHKGKQWKLWTYLLNIIASAVYAIVLLVETIAAIDQRGDLTGAEVFASFFMLASSMVIYEGGRLHAMKEIYKMGDEQKVARWARRRLSARKSIRHSVLVNPFRLVRREIVAHTMMSITLIFVITSLPSPIR 551
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO03G03550.1 ID=NO03G03550.1|Name=NO03G03550.1|organism=Nannochloropsis oceanica|type=mRNA|length=2595bp
AAACCACAGGCCTTTACTTGTTGTGCCGGGCCACAAGTTTCTGGAAGGTA
TTAGCTGCGCTCTCGATTCTCTTTATTGGCTCCACACGACAACCCGCGTC
CCCGCCCCACTTCGCATGGCCAACACCTCCAGTGCCAACAGCAGCAGCAG
AAGCAGCGGCAGCCACATTGCCAAGCTCCTGCCCCAGTCCCCACAAGATT
CACCGGTGCGCGTCTACAGTAAGAAGGCTGACCAACAAGGTGCCAACAGC
AGCAATAATGGGGCCACAGCGGCAGGCGTTGCGCTGGGCGGCTCTTCTGC
TTCGTCTTGGGATGTGGAGCAAGCCGATCAAAGCCCTACGCACAGCCCTT
CCAAGCAACTCTTGTCGGCCAGTCTTGCCCCGGCGATGATACAGAAGCTA
ATTTATGGCCTGGGTGCCTCCTTTGGATTTAACGCGCTGGTTGTGAGCAA
TGGAACTTTGATGGACTACTACGAAAAGACATATGGGTTGTCCACTTCCT
TCCTCAGCTTGGCTGATTTCCTGGCAGGATCCTTGACGCTGTACGCCGTC
GTAGGTTTTGGGTACTGGAGTGATATAACCACGAGCTCGTACGGGCGGCG
GAAGCCATTTGTGGTGTTTTTCACCCCGCTCTTGGCCTTTTCGCTTATCA
TGCTTTTTACTCCCAAATGGGCGCCTACGTACAGTAGCACGGGCACGGAG
ACAGCGGCCTGGTTTGGAGTGTTTTACACATTAGAGCAAGTATCGGTTTC
GTCGATGACGGTTGTGATTGCGGCATGGGGGACATCTTTGACGCATGCGG
TGAACGAACGAGCGTCTCTATATACCATCGACGCAATCATGGATTTGTTT
GGGTTTTGTGCCGGTGTTTTGATCACTGCCGTCGGCACGCCTGCCAAAAC
CGGGGTGGCGTTGGCATTCATCTTCCTCTTCCAGAATTTATTGCTCGTGT
CTTTTCTTCGCGATGAGCAGGTGACGACGGGTGCCACAGCTGGAGGAGCG
GCGAGGAGGCACCATGTGGCGGAGACTGCGATACAAGTCCCGTTTATTGC
GGGCTTGCACATGTCTTTTGAGAATAAGGAGTTTCTGACTTTGTTCAAGG
CTGCATTGTTTGGCAGTATTGTGGGCACCACGGTCAACCTCCTCCCAATC
TTCTTCCAAGTCGTCATGAGGATAGGCGATGACGCCATCGAAAGCGTCTA
TAGCATCTATGCCCAACTTGTCATCATTTCCGCTTTTTTTGCCGTTTTGT
CGACGGCCACTTTAAATGCACGATGGGGGAAAATTCGGACGCTTCAGTTT
GGGGTGGGCTGCGGAGCTGTGTATGGGTTGATTGCGTTTTGCGCCTCTTA
CGCGAGCGTGGTGGAGTTGTTCTACCTGAGCAGTGTCCCGGCTGGGATGT
TCGCGGGCATTGTGGCAGTGAACGGCAATGTGCTGTTGAGTAACTCGATC
GATTACGATCAGCTTAAGACAGGGTTTAGGCGGCAGTCGCTTTACCAATG
CCTCATTTATGTGCCCATGACTTTTGTCAGTGTCGCGGGCTCCTCCATTC
CTCTGTCGATCATCACGGCGTTCGGTGGGCTGGAAGCAGGACAGACCCCC
CCCTCCGCAGTCGTTCTGACTCTTCGGCTCTGGGTTTCATTGGTAGTGAC
TGGATGTTTGCTTGCCTCGTATCGTCAGCTGTCCGCCTTCAAGTTGACCG
AGGCAGTACAACAGGATGTCTCTGCCCAGCTCCGTCGGCGTGAGCAAGGA
CAGTTTTTGCCGCCCCGAGATCCGATCCAGGAAGAAGAGGACGAATCGGG
AGAGAATACATTGGGGGTAGAAGGCGAAATTGAGCTCTCACAGGATGTCA
AGGCAGGGGAAAACAGCAGCAGTGGTGGGGTTAACGGTATCAGCAGCAGT
GGTGAAGGTAAGGTGCGTGTGGACGTCGAGGTTGAGAATGACCCGCCGAG
TGCGTCGGTCAATGGGCCTTGGTACCCTATGGTGGCCTTCCTAGAGCTCA
ACTTTTCCTCTCAAGAGCTGGCGTTACTGACGCTGGATAATGGAAAGCAG
TGGAAGTTGGGCACATACCTGTTGAATCTGTTGGCTTGTGCTTTCTATGC
CGTCATTCTGTTTGTGCAGACGGTGGTAGCGGTCGACCAACGGGACGACT
TGACGGGCGCCATGATCTTTGTCTGCTTTTTAATGCTGGCTTCCAGTGTT
GCCATTTATGAGGGAGGGAGGTTTCATGCAATGAAGGAAGTTTACTACAT
GGGTGATGGACGGGACGTGGCGCGGTGGGCAAGGCAGCGTTTGACTGCGC
GAAAAAACGTGCGACCTTGGGTGTTGTACAATCCATTTCGACTCGTACTG
CGGACGGTCATCGCCCACGTGGGTTTCAGCATTGTCCTGCTTTCTGTGGT
TTTCTCATTGCATTTGCCGCTTAAAGGAGGAATAGAGAATTAGGCGCATT
AAAAATGGGGGGGGTAAGGGGGGTACATGTTCATGTGTACGATGACTGTC
GAGAAAAGTTGAAATTGAAATAGAATAACAAATAAACGGGCGGTGCCCTT
CCATGTATGATGATGAAAGCTAATTGATAAAAGCAATTATAAAGA back to topprotein sequence of NO03G03550.1 >NO03G03550.1-protein ID=NO03G03550.1-protein|Name=NO03G03550.1|organism=Nannochloropsis oceanica|type=polypeptide|length=776bp
MANTSSANSSSRSSGSHIAKLLPQSPQDSPVRVYSKKADQQGANSSNNGA
TAAGVALGGSSASSWDVEQADQSPTHSPSKQLLSASLAPAMIQKLIYGLG
ASFGFNALVVSNGTLMDYYEKTYGLSTSFLSLADFLAGSLTLYAVVGFGY
WSDITTSSYGRRKPFVVFFTPLLAFSLIMLFTPKWAPTYSSTGTETAAWF
GVFYTLEQVSVSSMTVVIAAWGTSLTHAVNERASLYTIDAIMDLFGFCAG
VLITAVGTPAKTGVALAFIFLFQNLLLVSFLRDEQVTTGATAGGAARRHH
VAETAIQVPFIAGLHMSFENKEFLTLFKAALFGSIVGTTVNLLPIFFQVV
MRIGDDAIESVYSIYAQLVIISAFFAVLSTATLNARWGKIRTLQFGVGCG
AVYGLIAFCASYASVVELFYLSSVPAGMFAGIVAVNGNVLLSNSIDYDQL
KTGFRRQSLYQCLIYVPMTFVSVAGSSIPLSIITAFGGLEAGQTPPSAVV
LTLRLWVSLVVTGCLLASYRQLSAFKLTEAVQQDVSAQLRRREQGQFLPP
RDPIQEEEDESGENTLGVEGEIELSQDVKAGENSSSGGVNGISSSGEGKV
RVDVEVENDPPSASVNGPWYPMVAFLELNFSSQELALLTLDNGKQWKLGT
YLLNLLACAFYAVILFVQTVVAVDQRDDLTGAMIFVCFLMLASSVAIYEG
GRFHAMKEVYYMGDGRDVARWARQRLTARKNVRPWVLYNPFRLVLRTVIA
HVGFSIVLLSVVFSLHLPLKGGIEN* back to topmRNA from alignment at chr3:1059754..1062348- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO03G03550.1 ID=NO03G03550.1|Name=NO03G03550.1|organism=Nannochloropsis oceanica|type=mRNA|length=2595bp|location=Sequence derived from alignment at chr3:1059754..1062348- (Nannochloropsis oceanica)
AAACCACAGGCCTTTACTTGTTGTGCCGGGCCACAAGTTTCTGGAAGGTA
TTAGCTGCGCTCTCGATTCTCTTTATTGGCTCCACACGACAACCCGCGTC
CCCGCCCCACTTCGCATGGCCAACACCTCCAGTGCCAACAGCAGCAGCAG
AAGCAGCGGCAGCCACATTGCCAAGCTCCTGCCCCAGTCCCCACAAGATT
CACCGGTGCGCGTCTACAGTAAGAAGGCTGACCAACAAGGTGCCAACAGC
AGCAATAATGGGGCCACAGCGGCAGGCGTTGCGCTGGGCGGCTCTTCTGC
TTCGTCTTGGGATGTGGAGCAAGCCGATCAAAGCCCTACGCACAGCCCTT
CCAAGCAACTCTTGTCGGCCAGTCTTGCCCCGGCGATGATACAGAAGCTA
ATTTATGGCCTGGGTGCCTCCTTTGGATTTAACGCGCTGGTTGTGAGCAA
TGGAACTTTGATGGACTACTACGAAAAGACATATGGGTTGTCCACTTCCT
TCCTCAGCTTGGCTGATTTCCTGGCAGGATCCTTGACGCTGTACGCCGTC
GTAGGTTTTGGGTACTGGAGTGATATAACCACGAGCTCGTACGGGCGGCG
GAAGCCATTTGTGGTGTTTTTCACCCCGCTCTTGGCCTTTTCGCTTATCA
TGCTTTTTACTCCCAAATGGGCGCCTACGTACAGTAGCACGGGCACGGAG
ACAGCGGCCTGGTTTGGAGTGTTTTACACATTAGAGCAAGTATCGGTTTC
GTCGATGACGGTTGTGATTGCGGCATGGGGGACATCTTTGACGCATGCGG
TGAACGAACGAGCGTCTCTATATACCATCGACGCAATCATGGATTTGTTT
GGGTTTTGTGCCGGTGTTTTGATCACTGCCGTCGGCACGCCTGCCAAAAC
CGGGGTGGCGTTGGCATTCATCTTCCTCTTCCAGAATTTATTGCTCGTGT
CTTTTCTTCGCGATGAGCAGGTGACGACGGGTGCCACAGCTGGAGGAGCG
GCGAGGAGGCACCATGTGGCGGAGACTGCGATACAAGTCCCGTTTATTGC
GGGCTTGCACATGTCTTTTGAGAATAAGGAGTTTCTGACTTTGTTCAAGG
CTGCATTGTTTGGCAGTATTGTGGGCACCACGGTCAACCTCCTCCCAATC
TTCTTCCAAGTCGTCATGAGGATAGGCGATGACGCCATCGAAAGCGTCTA
TAGCATCTATGCCCAACTTGTCATCATTTCCGCTTTTTTTGCCGTTTTGT
CGACGGCCACTTTAAATGCACGATGGGGGAAAATTCGGACGCTTCAGTTT
GGGGTGGGCTGCGGAGCTGTGTATGGGTTGATTGCGTTTTGCGCCTCTTA
CGCGAGCGTGGTGGAGTTGTTCTACCTGAGCAGTGTCCCGGCTGGGATGT
TCGCGGGCATTGTGGCAGTGAACGGCAATGTGCTGTTGAGTAACTCGATC
GATTACGATCAGCTTAAGACAGGGTTTAGGCGGCAGTCGCTTTACCAATG
CCTCATTTATGTGCCCATGACTTTTGTCAGTGTCGCGGGCTCCTCCATTC
CTCTGTCGATCATCACGGCGTTCGGTGGGCTGGAAGCAGGACAGACCCCC
CCCTCCGCAGTCGTTCTGACTCTTCGGCTCTGGGTTTCATTGGTAGTGAC
TGGATGTTTGCTTGCCTCGTATCGTCAGCTGTCCGCCTTCAAGTTGACCG
AGGCAGTACAACAGGATGTCTCTGCCCAGCTCCGTCGGCGTGAGCAAGGA
CAGTTTTTGCCGCCCCGAGATCCGATCCAGGAAGAAGAGGACGAATCGGG
AGAGAATACATTGGGGGTAGAAGGCGAAATTGAGCTCTCACAGGATGTCA
AGGCAGGGGAAAACAGCAGCAGTGGTGGGGTTAACGGTATCAGCAGCAGT
GGTGAAGGTAAGGTGCGTGTGGACGTCGAGGTTGAGAATGACCCGCCGAG
TGCGTCGGTCAATGGGCCTTGGTACCCTATGGTGGCCTTCCTAGAGCTCA
ACTTTTCCTCTCAAGAGCTGGCGTTACTGACGCTGGATAATGGAAAGCAG
TGGAAGTTGGGCACATACCTGTTGAATCTGTTGGCTTGTGCTTTCTATGC
CGTCATTCTGTTTGTGCAGACGGTGGTAGCGGTCGACCAACGGGACGACT
TGACGGGCGCCATGATCTTTGTCTGCTTTTTAATGCTGGCTTCCAGTGTT
GCCATTTATGAGGGAGGGAGGTTTCATGCAATGAAGGAAGTTTACTACAT
GGGTGATGGACGGGACGTGGCGCGGTGGGCAAGGCAGCGTTTGACTGCGC
GAAAAAACGTGCGACCTTGGGTGTTGTACAATCCATTTCGACTCGTACTG
CGGACGGTCATCGCCCACGTGGGTTTCAGCATTGTCCTGCTTTCTGTGGT
TTTCTCATTGCATTTGCCGCTTAAAGGAGGAATAGAGAATTAGGCGCATT
AAAAATGGGGGGGGTAAGGGGGGTACATGTTCATGTGTACGATGACTGTC
GAGAAAAGTTGAAATTGAAATAGAATAACAAATAAACGGGCGGTGCCCTT
CCATGTATGATGATGAAAGCTAATTGATAAAAGCAATTATAAAGA back to topCoding sequence (CDS) from alignment at chr3:1059754..1062348- >NO03G03550.1 ID=NO03G03550.1|Name=NO03G03550.1|organism=Nannochloropsis oceanica|type=CDS|length=2328bp|location=Sequence derived from alignment at chr3:1059754..1062348- (Nannochloropsis oceanica)
ATGGCCAACACCTCCAGTGCCAACAGCAGCAGCAGAAGCAGCGGCAGCCA
CATTGCCAAGCTCCTGCCCCAGTCCCCACAAGATTCACCGGTGCGCGTCT
ACAGTAAGAAGGCTGACCAACAAGGTGCCAACAGCAGCAATAATGGGGCC
ACAGCGGCAGGCGTTGCGCTGGGCGGCTCTTCTGCTTCGTCTTGGGATGT
GGAGCAAGCCGATCAAAGCCCTACGCACAGCCCTTCCAAGCAACTCTTGT
CGGCCAGTCTTGCCCCGGCGATGATACAGAAGCTAATTTATGGCCTGGGT
GCCTCCTTTGGATTTAACGCGCTGGTTGTGAGCAATGGAACTTTGATGGA
CTACTACGAAAAGACATATGGGTTGTCCACTTCCTTCCTCAGCTTGGCTG
ATTTCCTGGCAGGATCCTTGACGCTGTACGCCGTCGTAGGTTTTGGGTAC
TGGAGTGATATAACCACGAGCTCGTACGGGCGGCGGAAGCCATTTGTGGT
GTTTTTCACCCCGCTCTTGGCCTTTTCGCTTATCATGCTTTTTACTCCCA
AATGGGCGCCTACGTACAGTAGCACGGGCACGGAGACAGCGGCCTGGTTT
GGAGTGTTTTACACATTAGAGCAAGTATCGGTTTCGTCGATGACGGTTGT
GATTGCGGCATGGGGGACATCTTTGACGCATGCGGTGAACGAACGAGCGT
CTCTATATACCATCGACGCAATCATGGATTTGTTTGGGTTTTGTGCCGGT
GTTTTGATCACTGCCGTCGGCACGCCTGCCAAAACCGGGGTGGCGTTGGC
ATTCATCTTCCTCTTCCAGAATTTATTGCTCGTGTCTTTTCTTCGCGATG
AGCAGGTGACGACGGGTGCCACAGCTGGAGGAGCGGCGAGGAGGCACCAT
GTGGCGGAGACTGCGATACAAGTCCCGTTTATTGCGGGCTTGCACATGTC
TTTTGAGAATAAGGAGTTTCTGACTTTGTTCAAGGCTGCATTGTTTGGCA
GTATTGTGGGCACCACGGTCAACCTCCTCCCAATCTTCTTCCAAGTCGTC
ATGAGGATAGGCGATGACGCCATCGAAAGCGTCTATAGCATCTATGCCCA
ACTTGTCATCATTTCCGCTTTTTTTGCCGTTTTGTCGACGGCCACTTTAA
ATGCACGATGGGGGAAAATTCGGACGCTTCAGTTTGGGGTGGGCTGCGGA
GCTGTGTATGGGTTGATTGCGTTTTGCGCCTCTTACGCGAGCGTGGTGGA
GTTGTTCTACCTGAGCAGTGTCCCGGCTGGGATGTTCGCGGGCATTGTGG
CAGTGAACGGCAATGTGCTGTTGAGTAACTCGATCGATTACGATCAGCTT
AAGACAGGGTTTAGGCGGCAGTCGCTTTACCAATGCCTCATTTATGTGCC
CATGACTTTTGTCAGTGTCGCGGGCTCCTCCATTCCTCTGTCGATCATCA
CGGCGTTCGGTGGGCTGGAAGCAGGACAGACCCCCCCCTCCGCAGTCGTT
CTGACTCTTCGGCTCTGGGTTTCATTGGTAGTGACTGGATGTTTGCTTGC
CTCGTATCGTCAGCTGTCCGCCTTCAAGTTGACCGAGGCAGTACAACAGG
ATGTCTCTGCCCAGCTCCGTCGGCGTGAGCAAGGACAGTTTTTGCCGCCC
CGAGATCCGATCCAGGAAGAAGAGGACGAATCGGGAGAGAATACATTGGG
GGTAGAAGGCGAAATTGAGCTCTCACAGGATGTCAAGGCAGGGGAAAACA
GCAGCAGTGGTGGGGTTAACGGTATCAGCAGCAGTGGTGAAGGTAAGGTG
CGTGTGGACGTCGAGGTTGAGAATGACCCGCCGAGTGCGTCGGTCAATGG
GCCTTGGTACCCTATGGTGGCCTTCCTAGAGCTCAACTTTTCCTCTCAAG
AGCTGGCGTTACTGACGCTGGATAATGGAAAGCAGTGGAAGTTGGGCACA
TACCTGTTGAATCTGTTGGCTTGTGCTTTCTATGCCGTCATTCTGTTTGT
GCAGACGGTGGTAGCGGTCGACCAACGGGACGACTTGACGGGCGCCATGA
TCTTTGTCTGCTTTTTAATGCTGGCTTCCAGTGTTGCCATTTATGAGGGA
GGGAGGTTTCATGCAATGAAGGAAGTTTACTACATGGGTGATGGACGGGA
CGTGGCGCGGTGGGCAAGGCAGCGTTTGACTGCGCGAAAAAACGTGCGAC
CTTGGGTGTTGTACAATCCATTTCGACTCGTACTGCGGACGGTCATCGCC
CACGTGGGTTTCAGCATTGTCCTGCTTTCTGTGGTTTTCTCATTGCATTT
GCCGCTTAAAGGAGGAATAGAGAATTAG back to top
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