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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| chr3 | genome | chr3:1054225..1056489 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO03G03530.1 vs.
Match: EWM29850.1 (methionyl-trna synthetase [Nannochloropsis gaditana]) HSP 1 Score: 946.8 bits (2446), Expect = 3.400e-272 Identity = 486/632 (76.90%), Postives = 531/632 (84.02%), Query Frame = 0
Query: 1 MQDRRRHQLGFSTFRCS--SFRSTVVIIMLAALSLVKPMTAWRRKAVGFVRPDA----PHLRPHISSSSFPRRALSSSTPLRSAAA------GAGDKRKGYYITTPIYYVNDKPHIGHAYTTLACDVIARFMRLDGRDVFFLTGTDEHGQKVEQSAAKAGKTPQDFVDEVSQNFMSLAKTMDFTNDVFIRTTQHDHKAAVQALWKQLEDADQIYLGAYEGWYSVRDEAYYTESELVDGKAPTGAEVVWVVKEPSYFFKLSAWQEPLLKFYEENPGFIAPESRRNEVISFVKGGLKDLSISRTTFKWGVPVPGDADHVMYVWMDALTNYISAIGYPDAGGK----YQDFWPADLHVVGKDILRFHTVYWPAFLLAAGLAPPKKVFAHGWWTKDKQKISKSVGNVIDPVGLVETFGLDSTRYFLTSEVPFGNDGDFSNDAFVRRVNNQLANELGNLFQRSLAFISKYCEGKVPNPASAMTDADVALLKSARGLLGTARPLVEEHQALHKYAEALNQVVNEGNRYFDEQAPWALKKTDTDRMATVLYITIEALRSVAIMYQPIIPSSASKLLDLLAVPLDQRTFAHIGAAAALVPGTPLPTPEGVFPRVEDPAVAATAAAAPPKPPKQPKKPKAP 617
M RRR QLG+ T S SF +V++M A+ + +A RRK+ FV P A P LR H S RR S+S SAAA G+ K+ GYY+TTPIYYVNDKPHIGHAYTTLACDVIARFMRLDGRDVFFLTGTDEHGQKVEQSAAKAGK+PQ FVDEVSQNF SLAK M+FTND FIRTTQ DHKAAVQALWKQLE A IYLGAYEGWYSVRDEAYYTESELVDGKAPTGAEVVWVVKEPSYFFKLSAWQEPLL+FY +P FIAPESRRNEVISFVKGGLKDLSISRTTFKWGVPVP D DHVMYVWMDALTNYISA+GYP+A G YQ FWPADLHVVGKDILRFH VYWPAFL+AAGLAPP+++FAHGWWTKD+QKISKS+GNVIDPV LVE FGLD TRYFL SEVPFGNDGDFSNDAFVRRVNNQLANELGNLFQRSLAFI+K CEG+VP P SA+T+ADVA+L+SARGLL T RPLV + QALH+Y+EALN+VVNEGNRYFDEQAPW L+KTD DRMATVLY+T+EALRSVA++YQP+IP+SASKLLDLLAVP ++RTFA +GA AAL PGTPLP PEGVFPRVEDP AA+P K KQ KK KAP
Sbjct: 1 MHVRRRQQLGYPTSFWSFPSFFRVIVVVMYASST-----SALRRKSAAFVFPGARGYIPRLRSHSSLLFNERRFFSTSV---SAAATVKDSPGSNSKKTGYYVTTPIYYVNDKPHIGHAYTTLACDVIARFMRLDGRDVFFLTGTDEHGQKVEQSAAKAGKSPQTFVDEVSQNFRSLAKIMEFTNDKFIRTTQADHKAAVQALWKQLEAAGHIYLGAYEGWYSVRDEAYYTESELVDGKAPTGAEVVWVVKEPSYFFKLSAWQEPLLEFYAAHPNFIAPESRRNEVISFVKGGLKDLSISRTTFKWGVPVPEDDDHVMYVWMDALTNYISALGYPEAKGSSPTPYQRFWPADLHVVGKDILRFHAVYWPAFLMAAGLAPPRRIFAHGWWTKDRQKISKSLGNVIDPVRLVEQFGLDPTRYFLMSEVPFGNDGDFSNDAFVRRVNNQLANELGNLFQRSLAFIAKNCEGQVPEPTSALTEADVAMLRSARGLLETVRPLVRDEQALHRYSEALNRVVNEGNRYFDEQAPWTLRKTDKDRMATVLYVTVEALRSVALLYQPLIPASASKLLDLLAVPSERRTFADVGADAALTPGTPLPKPEGVFPRVEDPDAPKDGAASPAK-QKQHKKTKAP 623
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO03G03530.1 ID=NO03G03530.1|Name=NO03G03530.1|organism=Nannochloropsis oceanica|type=mRNA|length=2014bp
CAGCACAGCGCGCTGGCAAATCAAGGCGCTTTCATAGTCACGAACAACGA
GGCACACATGCAAGACAGAAGAAGACATCAGCTAGGATTTTCCACCTTTC
GCTGCTCGTCATTCCGCTCCACCGTGGTCATCATCATGCTGGCCGCCTTG
AGTCTAGTGAAACCCATGACAGCCTGGCGAAGAAAAGCCGTAGGCTTCGT
CCGACCCGATGCTCCTCATCTGCGCCCACACATCTCCTCCTCCTCCTTTC
CCCGGCGAGCTTTGTCCTCCTCCACACCCCTGCGCTCCGCTGCCGCCGGT
GCTGGCGACAAAAGGAAAGGTTACTACATCACCACCCCCATATATTACGT
GAACGACAAGCCGCATATTGGGCATGCCTATACCACTTTGGCTTGTGATG
TCATTGCACGCTTCATGCGCCTCGATGGGCGGGACGTTTTCTTCCTGACT
GGCACAGATGAGCATGGGCAGAAAGTAGAACAAAGCGCAGCAAAGGCGGG
TAAGACCCCCCAAGATTTTGTTGATGAAGTCTCGCAGAATTTTATGTCCC
TTGCCAAGACGATGGACTTTACGAATGATGTGTTTATTCGGACGACCCAG
CATGATCACAAAGCCGCGGTGCAAGCGTTGTGGAAGCAGTTGGAGGACGC
GGACCAAATTTACCTGGGAGCTTACGAAGGATGGTACTCTGTGCGTGATG
AAGCTTACTATACGGAGAGTGAGCTAGTGGATGGTAAAGCTCCGACGGGG
GCGGAGGTCGTGTGGGTGGTGAAGGAACCGAGTTATTTTTTCAAGTTGTC
GGCGTGGCAGGAGCCGCTGTTGAAGTTCTATGAGGAGAATCCTGGGTTTA
TTGCACCAGAGAGTCGGCGAAATGAAGTGATTAGCTTTGTAAAGGGGGGA
TTGAAGGATTTGTCGATTTCGAGGACGACATTTAAGTGGGGGGTGCCGGT
GCCAGGGGATGCGGATCATGTAATGTATGTGTGGATGGATGCATTGACTA
ATTATATCTCTGCGATTGGGTACCCGGATGCGGGAGGGAAATATCAAGAT
TTTTGGCCAGCAGATTTGCATGTAGTGGGAAAGGATATTCTGAGGTTCCA
CACGGTTTATTGGCCGGCGTTTCTCCTCGCTGCCGGCCTGGCGCCCCCGA
AGAAGGTGTTTGCCCATGGGTGGTGGACGAAGGATAAGCAGAAAATAAGT
AAGAGTGTAGGAAATGTGATTGATCCGGTCGGATTGGTGGAGACGTTTGG
GTTGGACTCGACAAGGTACTTTTTGACGAGTGAGGTGCCGTTTGGGAATG
ATGGAGATTTTAGCAATGACGCTTTCGTGCGGCGTGTGAACAACCAGTTG
GCTAATGAATTGGGGAATCTCTTTCAGAGGTCCCTGGCCTTCATAAGCAA
GTATTGTGAGGGCAAAGTGCCGAACCCGGCAAGTGCAATGACAGACGCGG
ATGTGGCTTTATTAAAGTCGGCGAGGGGGTTGCTGGGGACGGCCAGGCCA
CTGGTGGAGGAGCATCAGGCATTGCACAAGTACGCAGAAGCTCTTAATCA
AGTTGTAAACGAAGGGAACCGTTACTTTGACGAACAGGCGCCGTGGGCGC
TCAAGAAGACGGATACGGACCGAATGGCCACGGTTTTGTATATTACCATT
GAGGCATTGCGATCCGTGGCCATCATGTACCAACCCATCATTCCGTCCTC
GGCCTCCAAGCTTCTGGACCTCCTGGCCGTCCCACTTGACCAAAGGACGT
TTGCTCACATTGGTGCTGCTGCTGCTTTGGTACCTGGTACCCCCCTCCCT
ACCCCTGAAGGAGTCTTCCCTCGCGTTGAGGACCCTGCGGTGGCTGCTAC
TGCTGCTGCTGCTCCTCCCAAGCCGCCAAAACAACCGAAGAAGCCCAAGG
CACCCAAGGCGTCCAAAGCAGAGCAGCAACAAGCATGAAGACATGCTGAT
GGGAAAGAGGGGAGAAGGCAAAAGGAAATTTATAAAGAAGATGATCCTCA
TAAATCGTAAGAGC back to topprotein sequence of NO03G03530.1 >NO03G03530.1-protein ID=NO03G03530.1-protein|Name=NO03G03530.1|organism=Nannochloropsis oceanica|type=polypeptide|length=627bp
MQDRRRHQLGFSTFRCSSFRSTVVIIMLAALSLVKPMTAWRRKAVGFVRP
DAPHLRPHISSSSFPRRALSSSTPLRSAAAGAGDKRKGYYITTPIYYVND
KPHIGHAYTTLACDVIARFMRLDGRDVFFLTGTDEHGQKVEQSAAKAGKT
PQDFVDEVSQNFMSLAKTMDFTNDVFIRTTQHDHKAAVQALWKQLEDADQ
IYLGAYEGWYSVRDEAYYTESELVDGKAPTGAEVVWVVKEPSYFFKLSAW
QEPLLKFYEENPGFIAPESRRNEVISFVKGGLKDLSISRTTFKWGVPVPG
DADHVMYVWMDALTNYISAIGYPDAGGKYQDFWPADLHVVGKDILRFHTV
YWPAFLLAAGLAPPKKVFAHGWWTKDKQKISKSVGNVIDPVGLVETFGLD
STRYFLTSEVPFGNDGDFSNDAFVRRVNNQLANELGNLFQRSLAFISKYC
EGKVPNPASAMTDADVALLKSARGLLGTARPLVEEHQALHKYAEALNQVV
NEGNRYFDEQAPWALKKTDTDRMATVLYITIEALRSVAIMYQPIIPSSAS
KLLDLLAVPLDQRTFAHIGAAAALVPGTPLPTPEGVFPRVEDPAVAATAA
AAPPKPPKQPKKPKAPKASKAEQQQA* back to topmRNA from alignment at chr3:1054225..1056489- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO03G03530.1 ID=NO03G03530.1|Name=NO03G03530.1|organism=Nannochloropsis oceanica|type=mRNA|length=2265bp|location=Sequence derived from alignment at chr3:1054225..1056489- (Nannochloropsis oceanica)
CAGCACAGCGCGCTGGCAAATCAAGGCGCTTTCATAGTCACGAACAACGA
GGCACACATGCAAGACAGAAGAAGACATCAGCTAGGATTTTCCACCTTTC
GCTGCTCGTCATTCCGCTCCACCGTGGTCATCATCATGCTGGCCGCCTTG
AGTCTAGGTACGTGCGTGTGCACTTGATGCGAGATTGGAGGACGCATAGG
CATGCAATGCGAATTAATCCTCCATTAGCGTCTACTTGTAACTGTATTTA
TCCTTCTCTTACCTCCGGTCCCTTTTGTGCCTCATCTACTTAATGCCTTG
TCTTGATAAGTTCTCTGTTCTAAGGGGCTTTCCGCATTTCTCTATCTCCT
CCTTTCCTAGTGCACCAACTCAATCCTTTAACCTCACTTCTCCCCAAAAC
TTCTACAGTGAAACCCATGACAGCCTGGCGAAGAAAAGCCGTAGGCTTCG
TCCGACCCGATGCTCCTCATCTGCGCCCACACATCTCCTCCTCCTCCTTT
CCCCGGCGAGCTTTGTCCTCCTCCACACCCCTGCGCTCCGCTGCCGCCGG
TGCTGGCGACAAAAGGAAAGGTTACTACATCACCACCCCCATATATTACG
TGAACGACAAGCCGCATATTGGGCATGCCTATACCACTTTGGCTTGTGAT
GTCATTGCACGCTTCATGCGCCTCGATGGGCGGGACGTTTTCTTCCTGAC
TGGCACAGATGAGCATGGGCAGAAAGTAGAACAAAGCGCAGCAAAGGCGG
GTAAGACCCCCCAAGATTTTGTTGATGAAGTCTCGCAGAATTTTATGTCC
CTTGCCAAGACGATGGACTTTACGAATGATGTGTTTATTCGGACGACCCA
GCATGATCACAAAGCCGCGGTGCAAGCGTTGTGGAAGCAGTTGGAGGACG
CGGACCAAATTTACCTGGGAGCTTACGAAGGATGGTACTCTGTGCGTGAT
GAAGCTTACTATACGGAGAGTGAGCTAGTGGATGGTAAAGCTCCGACGGG
GGCGGAGGTCGTGTGGGTGGTGAAGGAACCGAGTTATTTTTTCAAGTTGT
CGGCGTGGCAGGAGCCGCTGTTGAAGTTCTATGAGGAGAATCCTGGGTTT
ATTGCACCAGAGAGTCGGCGAAATGAAGTGATTAGCTTTGTAAAGGGGGG
ATTGAAGGATTTGTCGATTTCGAGGACGACATTTAAGTGGGGGGTGCCGG
TGCCAGGGGATGCGGATCATGTAATGTATGTGTGGATGGATGCATTGACT
AATTATATCTCTGCGATTGGGTACCCGGATGCGGGAGGGAAATATCAAGA
TTTTTGGCCAGCAGATTTGCATGTAGTGGGAAAGGATATTCTGAGGTTCC
ACACGGTTTATTGGCCGGCGTTTCTCCTCGCTGCCGGCCTGGCGCCCCCG
AAGAAGGTGTTTGCCCATGGGTGGTGGACGAAGGATAAGCAGAAAATAAG
TAAGAGTGTAGGAAATGTGATTGATCCGGTCGGATTGGTGGAGACGTTTG
GGTTGGACTCGACAAGGTACTTTTTGACGAGTGAGGTGCCGTTTGGGAAT
GATGGAGATTTTAGCAATGACGCTTTCGTGCGGCGTGTGAACAACCAGTT
GGCTAATGAATTGGGGAATCTCTTTCAGAGGTCCCTGGCCTTCATAAGCA
AGTATTGTGAGGGCAAAGTGCCGAACCCGGCAAGTGCAATGACAGACGCG
GATGTGGCTTTATTAAAGTCGGCGAGGGGGTTGCTGGGGACGGCCAGGCC
ACTGGTGGAGGAGCATCAGGCATTGCACAAGTACGCAGAAGCTCTTAATC
AAGTTGTAAACGAAGGGAACCGTTACTTTGACGAACAGGCGCCGTGGGCG
CTCAAGAAGACGGATACGGACCGAATGGCCACGGTTTTGTATATTACCAT
TGAGGCATTGCGATCCGTGGCCATCATGTACCAACCCATCATTCCGTCCT
CGGCCTCCAAGCTTCTGGACCTCCTGGCCGTCCCACTTGACCAAAGGACG
TTTGCTCACATTGGTGCTGCTGCTGCTTTGGTACCTGGTACCCCCCTCCC
TACCCCTGAAGGAGTCTTCCCTCGCGTTGAGGACCCTGCGGTGGCTGCTA
CTGCTGCTGCTGCTCCTCCCAAGCCGCCAAAACAACCGAAGAAGCCCAAG
GCACCCAAGGCGTCCAAAGCAGAGCAGCAACAAGCATGAAGACATGCTGA
TGGGAAAGAGGGGAGAAGGCAAAAGGAAATTTATAAAGAAGATGATCCTC
ATAAATCGTAAGAGC back to topCoding sequence (CDS) from alignment at chr3:1054225..1056489- >NO03G03530.1 ID=NO03G03530.1|Name=NO03G03530.1|organism=Nannochloropsis oceanica|type=CDS|length=1881bp|location=Sequence derived from alignment at chr3:1054225..1056489- (Nannochloropsis oceanica)
ATGCAAGACAGAAGAAGACATCAGCTAGGATTTTCCACCTTTCGCTGCTC
GTCATTCCGCTCCACCGTGGTCATCATCATGCTGGCCGCCTTGAGTCTAG
TGAAACCCATGACAGCCTGGCGAAGAAAAGCCGTAGGCTTCGTCCGACCC
GATGCTCCTCATCTGCGCCCACACATCTCCTCCTCCTCCTTTCCCCGGCG
AGCTTTGTCCTCCTCCACACCCCTGCGCTCCGCTGCCGCCGGTGCTGGCG
ACAAAAGGAAAGGTTACTACATCACCACCCCCATATATTACGTGAACGAC
AAGCCGCATATTGGGCATGCCTATACCACTTTGGCTTGTGATGTCATTGC
ACGCTTCATGCGCCTCGATGGGCGGGACGTTTTCTTCCTGACTGGCACAG
ATGAGCATGGGCAGAAAGTAGAACAAAGCGCAGCAAAGGCGGGTAAGACC
CCCCAAGATTTTGTTGATGAAGTCTCGCAGAATTTTATGTCCCTTGCCAA
GACGATGGACTTTACGAATGATGTGTTTATTCGGACGACCCAGCATGATC
ACAAAGCCGCGGTGCAAGCGTTGTGGAAGCAGTTGGAGGACGCGGACCAA
ATTTACCTGGGAGCTTACGAAGGATGGTACTCTGTGCGTGATGAAGCTTA
CTATACGGAGAGTGAGCTAGTGGATGGTAAAGCTCCGACGGGGGCGGAGG
TCGTGTGGGTGGTGAAGGAACCGAGTTATTTTTTCAAGTTGTCGGCGTGG
CAGGAGCCGCTGTTGAAGTTCTATGAGGAGAATCCTGGGTTTATTGCACC
AGAGAGTCGGCGAAATGAAGTGATTAGCTTTGTAAAGGGGGGATTGAAGG
ATTTGTCGATTTCGAGGACGACATTTAAGTGGGGGGTGCCGGTGCCAGGG
GATGCGGATCATGTAATGTATGTGTGGATGGATGCATTGACTAATTATAT
CTCTGCGATTGGGTACCCGGATGCGGGAGGGAAATATCAAGATTTTTGGC
CAGCAGATTTGCATGTAGTGGGAAAGGATATTCTGAGGTTCCACACGGTT
TATTGGCCGGCGTTTCTCCTCGCTGCCGGCCTGGCGCCCCCGAAGAAGGT
GTTTGCCCATGGGTGGTGGACGAAGGATAAGCAGAAAATAAGTAAGAGTG
TAGGAAATGTGATTGATCCGGTCGGATTGGTGGAGACGTTTGGGTTGGAC
TCGACAAGGTACTTTTTGACGAGTGAGGTGCCGTTTGGGAATGATGGAGA
TTTTAGCAATGACGCTTTCGTGCGGCGTGTGAACAACCAGTTGGCTAATG
AATTGGGGAATCTCTTTCAGAGGTCCCTGGCCTTCATAAGCAAGTATTGT
GAGGGCAAAGTGCCGAACCCGGCAAGTGCAATGACAGACGCGGATGTGGC
TTTATTAAAGTCGGCGAGGGGGTTGCTGGGGACGGCCAGGCCACTGGTGG
AGGAGCATCAGGCATTGCACAAGTACGCAGAAGCTCTTAATCAAGTTGTA
AACGAAGGGAACCGTTACTTTGACGAACAGGCGCCGTGGGCGCTCAAGAA
GACGGATACGGACCGAATGGCCACGGTTTTGTATATTACCATTGAGGCAT
TGCGATCCGTGGCCATCATGTACCAACCCATCATTCCGTCCTCGGCCTCC
AAGCTTCTGGACCTCCTGGCCGTCCCACTTGACCAAAGGACGTTTGCTCA
CATTGGTGCTGCTGCTGCTTTGGTACCTGGTACCCCCCTCCCTACCCCTG
AAGGAGTCTTCCCTCGCGTTGAGGACCCTGCGGTGGCTGCTACTGCTGCT
GCTGCTCCTCCCAAGCCGCCAAAACAACCGAAGAAGCCCAAGGCACCCAA
GGCGTCCAAAGCAGAGCAGCAACAAGCATGA back to top
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