NO03G03520.1, NO03G03520.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO03G03520.1
Unique NameNO03G03520.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length867
Alignment locationchr3:1047852..1048718 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:1047852..1048718 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO03G03520.1 vs.
Match: EWM29853.1 (pseudouridine synthase [Nannochloropsis gaditana])

HSP 1 Score: 389.4 bits (999), Expect = 9.600e-105
Identity = 194/283 (68.55%), Postives = 222/283 (78.45%), Query Frame = 0 
Query:    5 RSLAWVTAPAGRCAPGRMQLHRLYGSSGDII-GFRPGDGKEGIEAHEKAMKNFELEVVHDDADIIVVNKPAGALCVPGRFIQDSLVVRVAAHFGIKDFTRMVVHRLDQGTSGVLVLAKNDVALKNLHMQLRPEARNLTAGGDGGMQKKYVAVVEGDDLYPINGQINLPLSKDMDNPPKQMVDKMTGKPSLTEYTIRSRGADSSLVELRPITGRTHQLRVHLSCIGHPILGDPFYASLRVQNKAPGGRLCLHAESLAFRHPTTQERVSFSTQYPKVWDEGMVSV 287
            RS AWVT   G   P        YGSS   I GFRPGDGKEGIEAH KAM+ FEL++++DD D+IVV KPAG+LCVPGRFIQDSLVVRVAAH  IKDF RMVVHRLDQGTSGVLV A+ND ALKNLH Q RPEA+ +T  G+ GMQK+YVA+VEG ++    G+I LPLSKD DNPPKQMVD   GK S+T Y +R  G D +LV L P+TGRTHQLRVHLSCIG+PILGDPFYA LRVQ KAPGGRLCLHAESL+FRHP TQER++F++ YP+ WD G+  V
Sbjct:   80 RSWAWVT---GAFPPLLRTRSCPYGSSSMAIQGFRPGDGKEGIEAHIKAMEGFELQILYDDTDVIVVTKPAGSLCVPGRFIQDSLVVRVAAHAKIKDFARMVVHRLDQGTSGVLVFARNDAALKNLHAQFRPEAKRMTGNGNEGMQKRYVALVEG-NMDAFEGKIELPLSKDTDNPPKQMVDFAAGKASMTRYRVRRSGVDRNLVGLEPVTGRTHQLRVHLSCIGNPILGDPFYAPLRVQEKAPGGRLCLHAESLSFRHPRTQERLTFTSPYPREWDGGLEDV 358
The following BLAST results are available for this feature:
BLAST of NO03G03520.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29853.19.600e-10568.55pseudouridine synthase [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO03G03520NO03G03520Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO03G03520.1NO03G03520.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO03G03520.1.cds1NO03G03520.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO03G03520.1 ID=NO03G03520.1|Name=NO03G03520.1|organism=Nannochloropsis oceanica|type=mRNA|length=867bp
ATGTCGTGGCGGCGTTCCCTGGCATGGGTCACCGCCCCTGCCGGGAGATG
TGCCCCAGGTAGAATGCAGCTGCATCGCCTGTATGGCAGCAGTGGTGACA
TTATTGGGTTCCGTCCTGGGGATGGTAAGGAAGGCATTGAAGCCCACGAA
AAAGCCATGAAAAACTTTGAGCTTGAAGTCGTGCATGACGATGCGGACAT
CATCGTTGTTAATAAACCGGCCGGGGCTTTGTGTGTACCTGGGCGCTTCA
TTCAAGACTCGTTGGTAGTACGTGTTGCAGCCCACTTTGGCATCAAAGAC
TTTACGCGCATGGTCGTCCATCGCTTGGACCAAGGCACTTCAGGCGTACT
CGTCTTAGCTAAGAACGATGTTGCCCTTAAAAATCTACACATGCAGCTCC
GACCGGAAGCCAGGAATCTGACGGCGGGCGGGGACGGAGGGATGCAAAAA
AAGTACGTGGCCGTGGTGGAAGGCGATGACCTGTATCCTATCAATGGGCA
AATCAACCTTCCCTTGAGCAAGGATATGGACAATCCACCCAAACAAATGG
TGGACAAGATGACAGGTAAGCCCTCTTTGACTGAGTACACGATTCGAAGC
CGTGGCGCTGACAGCAGTTTGGTTGAGCTGCGGCCTATCACAGGAAGGAC
GCACCAGTTACGCGTGCACCTCAGTTGCATTGGCCATCCTATCTTAGGGG
ATCCCTTTTACGCCTCACTGAGAGTACAAAACAAGGCACCGGGTGGACGG
TTATGTTTGCACGCGGAGTCATTGGCTTTCAGGCATCCAACGACACAGGA
GCGGGTGAGTTTCTCGACGCAGTATCCTAAGGTGTGGGACGAGGGAATGG
TGAGTGTGATGATATAA
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protein sequence of NO03G03520.1

>NO03G03520.1-protein ID=NO03G03520.1-protein|Name=NO03G03520.1|organism=Nannochloropsis oceanica|type=polypeptide|length=289bp
MSWRRSLAWVTAPAGRCAPGRMQLHRLYGSSGDIIGFRPGDGKEGIEAHE
KAMKNFELEVVHDDADIIVVNKPAGALCVPGRFIQDSLVVRVAAHFGIKD
FTRMVVHRLDQGTSGVLVLAKNDVALKNLHMQLRPEARNLTAGGDGGMQK
KYVAVVEGDDLYPINGQINLPLSKDMDNPPKQMVDKMTGKPSLTEYTIRS
RGADSSLVELRPITGRTHQLRVHLSCIGHPILGDPFYASLRVQNKAPGGR
LCLHAESLAFRHPTTQERVSFSTQYPKVWDEGMVSVMI*
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mRNA from alignment at chr3:1047852..1048718-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO03G03520.1 ID=NO03G03520.1|Name=NO03G03520.1|organism=Nannochloropsis oceanica|type=mRNA|length=867bp|location=Sequence derived from alignment at chr3:1047852..1048718- (Nannochloropsis oceanica)
ATGTCGTGGCGGCGTTCCCTGGCATGGGTCACCGCCCCTGCCGGGAGATG
TGCCCCAGGTAGAATGCAGCTGCATCGCCTGTATGGCAGCAGTGGTGACA
TTATTGGGTTCCGTCCTGGGGATGGTAAGGAAGGCATTGAAGCCCACGAA
AAAGCCATGAAAAACTTTGAGCTTGAAGTCGTGCATGACGATGCGGACAT
CATCGTTGTTAATAAACCGGCCGGGGCTTTGTGTGTACCTGGGCGCTTCA
TTCAAGACTCGTTGGTAGTACGTGTTGCAGCCCACTTTGGCATCAAAGAC
TTTACGCGCATGGTCGTCCATCGCTTGGACCAAGGCACTTCAGGCGTACT
CGTCTTAGCTAAGAACGATGTTGCCCTTAAAAATCTACACATGCAGCTCC
GACCGGAAGCCAGGAATCTGACGGCGGGCGGGGACGGAGGGATGCAAAAA
AAGTACGTGGCCGTGGTGGAAGGCGATGACCTGTATCCTATCAATGGGCA
AATCAACCTTCCCTTGAGCAAGGATATGGACAATCCACCCAAACAAATGG
TGGACAAGATGACAGGTAAGCCCTCTTTGACTGAGTACACGATTCGAAGC
CGTGGCGCTGACAGCAGTTTGGTTGAGCTGCGGCCTATCACAGGAAGGAC
GCACCAGTTACGCGTGCACCTCAGTTGCATTGGCCATCCTATCTTAGGGG
ATCCCTTTTACGCCTCACTGAGAGTACAAAACAAGGCACCGGGTGGACGG
TTATGTTTGCACGCGGAGTCATTGGCTTTCAGGCATCCAACGACACAGGA
GCGGGTGAGTTTCTCGACGCAGTATCCTAAGGTGTGGGACGAGGGAATGG
TGAGTGTGATGATATAA
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Coding sequence (CDS) from alignment at chr3:1047852..1048718-

>NO03G03520.1 ID=NO03G03520.1|Name=NO03G03520.1|organism=Nannochloropsis oceanica|type=CDS|length=867bp|location=Sequence derived from alignment at chr3:1047852..1048718- (Nannochloropsis oceanica)
ATGTCGTGGCGGCGTTCCCTGGCATGGGTCACCGCCCCTGCCGGGAGATG
TGCCCCAGGTAGAATGCAGCTGCATCGCCTGTATGGCAGCAGTGGTGACA
TTATTGGGTTCCGTCCTGGGGATGGTAAGGAAGGCATTGAAGCCCACGAA
AAAGCCATGAAAAACTTTGAGCTTGAAGTCGTGCATGACGATGCGGACAT
CATCGTTGTTAATAAACCGGCCGGGGCTTTGTGTGTACCTGGGCGCTTCA
TTCAAGACTCGTTGGTAGTACGTGTTGCAGCCCACTTTGGCATCAAAGAC
TTTACGCGCATGGTCGTCCATCGCTTGGACCAAGGCACTTCAGGCGTACT
CGTCTTAGCTAAGAACGATGTTGCCCTTAAAAATCTACACATGCAGCTCC
GACCGGAAGCCAGGAATCTGACGGCGGGCGGGGACGGAGGGATGCAAAAA
AAGTACGTGGCCGTGGTGGAAGGCGATGACCTGTATCCTATCAATGGGCA
AATCAACCTTCCCTTGAGCAAGGATATGGACAATCCACCCAAACAAATGG
TGGACAAGATGACAGGTAAGCCCTCTTTGACTGAGTACACGATTCGAAGC
CGTGGCGCTGACAGCAGTTTGGTTGAGCTGCGGCCTATCACAGGAAGGAC
GCACCAGTTACGCGTGCACCTCAGTTGCATTGGCCATCCTATCTTAGGGG
ATCCCTTTTACGCCTCACTGAGAGTACAAAACAAGGCACCGGGTGGACGG
TTATGTTTGCACGCGGAGTCATTGGCTTTCAGGCATCCAACGACACAGGA
GCGGGTGAGTTTCTCGACGCAGTATCCTAAGGTGTGGGACGAGGGAATGG
TGAGTGTGATGATATAA
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Synonyms
Publications