NO03G03490.1, NO03G03490.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO03G03490.1
Unique NameNO03G03490.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length993
Alignment locationchr3:1044669..1045661 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:1044669..1045661 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO03G03490.1 vs.
Match: EWM29787.1 (uridine phosphorylase [Nannochloropsis gaditana])

HSP 1 Score: 378.3 bits (970), Expect = 2.500e-101
Identity = 203/303 (67.00%), Postives = 228/303 (75.25%), Query Frame = 0
Query:   27 DTPRCIYRDTNAVPRNLDSTTLHLGLKEGQIASRIVTVGCPRRAALITKALDSTQPIFEHTSPRGFITYTGTFEGVGVSIVAIGMGSPMMDFFVREARQIVAGPLIIARFGTCGVLQSHVTVGGVIVASPGSVLCMRNPDAFLP-PTTSTTTTKTVPTDAVNDTVHTPHQPYLVFAPQPSDRALSHALVSELIAELGPARVTQGMNASACSFYSSQGREDTLFDDRNMHVLDTLRTQHPSLLSMEMETFQLFALANASRGTVRAAAASIGVANRPTGDVCEQSVFSCLEVTGGRAVVRALARF 329
            +T R +YRDTNAVPRN DSTTLHLGLKEGQIASRI+TVGCP RA LI K LD + PIF HTSPRGF TYTGTFE   VSI+AIGMG PMMDF VREARQ+V+ PL+I RFGTCG L   V VG V+VASPGSV  MRNPDAFLP PT S T+   +   A     H    PYLVFAPQ +D  L+ AL+ EL  +LG   V +GMN SACSFYSSQGR D  FDDRN  +LD LR +HPSL SMEME+FQL ALA ASR +VRAAAASI VANRPTGDVC+++  + LE  GG A+VRAL RF
Sbjct:   25 ETQRNVYRDTNAVPRNFDSTTLHLGLKEGQIASRILTVGCPGRAGLIAKVLDKSSPIFSHTSPRGFTTYTGTFERTRVSIIAIGMGMPMMDFLVREARQLVSKPLLITRFGTCGALCPDVAVGSVVVASPGSVSVMRNPDAFLPLPTPSGTSADEIDPIATGGAPHV-RPPYLVFAPQLADPVLTQALLGELKEQLGSEHVRRGMNVSACSFYSSQGRRDAFFDDRNEDLLDVLRERHPSLASMEMESFQLLALARASRESVRAAAASIVVANRPTGDVCDEARLAYLERAGGEAMVRALVRF 326          
The following BLAST results are available for this feature:
BLAST of NO03G03490.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29787.12.500e-10167.00uridine phosphorylase [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO03G03490NO03G03490Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO03G03490.1NO03G03490.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO03G03490.1.cds1NO03G03490.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO03G03490.1 ID=NO03G03490.1|Name=NO03G03490.1|organism=Nannochloropsis oceanica|type=mRNA|length=993bp
ATGGAGGCAACAAATGGAAAAAAGGGAGACACGCCTACTCCGACCACTGC
AGCCACCACTACCAGCAGCAACGACAACGATACACCGCGATGCATCTACC
GGGACACGAATGCGGTTCCTCGTAACCTCGACTCGACGACGCTCCACCTT
GGCCTCAAAGAAGGCCAAATAGCCTCCCGCATCGTCACGGTTGGCTGCCC
AAGACGTGCCGCGCTGATTACCAAGGCACTAGATAGCACGCAACCAATCT
TTGAGCACACCTCGCCGCGTGGTTTTATTACCTATACGGGAACCTTTGAG
GGTGTAGGCGTTTCCATTGTTGCTATTGGGATGGGTTCGCCCATGATGGA
TTTTTTTGTGCGGGAAGCCAGGCAAATTGTCGCAGGCCCCTTGATCATTG
CCCGCTTTGGGACTTGTGGAGTGTTGCAGTCACATGTGACTGTCGGCGGG
GTCATTGTTGCATCTCCTGGCTCCGTGCTGTGCATGCGCAACCCCGACGC
CTTCTTGCCTCCCACCACCTCCACCACTACGACAAAAACGGTACCAACAG
ACGCTGTCAACGATACGGTTCACACACCTCACCAACCATATCTGGTATTT
GCACCTCAACCCTCTGATCGAGCACTATCCCATGCCTTGGTTTCTGAACT
CATCGCCGAGCTAGGTCCTGCCCGAGTTACACAAGGAATGAACGCCTCTG
CCTGCTCCTTCTACTCTTCCCAAGGCCGAGAAGACACCCTGTTCGACGAC
CGGAACATGCACGTGCTCGACACACTGCGGACCCAGCATCCTTCGTTGTT
AAGCATGGAAATGGAGACTTTTCAATTGTTTGCTTTGGCAAACGCCAGTC
GGGGTACTGTTCGCGCGGCGGCCGCGAGTATTGGTGTCGCGAACCGTCCT
ACAGGCGATGTGTGTGAACAGTCAGTTTTCAGTTGTTTGGAAGTTACAGG
GGGCAGGGCAGTGGTAAGAGCGCTGGCGAGATTCGTGATGTAG
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protein sequence of NO03G03490.1

>NO03G03490.1-protein ID=NO03G03490.1-protein|Name=NO03G03490.1|organism=Nannochloropsis oceanica|type=polypeptide|length=331bp
MEATNGKKGDTPTPTTAATTTSSNDNDTPRCIYRDTNAVPRNLDSTTLHL
GLKEGQIASRIVTVGCPRRAALITKALDSTQPIFEHTSPRGFITYTGTFE
GVGVSIVAIGMGSPMMDFFVREARQIVAGPLIIARFGTCGVLQSHVTVGG
VIVASPGSVLCMRNPDAFLPPTTSTTTTKTVPTDAVNDTVHTPHQPYLVF
APQPSDRALSHALVSELIAELGPARVTQGMNASACSFYSSQGREDTLFDD
RNMHVLDTLRTQHPSLLSMEMETFQLFALANASRGTVRAAAASIGVANRP
TGDVCEQSVFSCLEVTGGRAVVRALARFVM*
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mRNA from alignment at chr3:1044669..1045661-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO03G03490.1 ID=NO03G03490.1|Name=NO03G03490.1|organism=Nannochloropsis oceanica|type=mRNA|length=993bp|location=Sequence derived from alignment at chr3:1044669..1045661- (Nannochloropsis oceanica)
ATGGAGGCAACAAATGGAAAAAAGGGAGACACGCCTACTCCGACCACTGC AGCCACCACTACCAGCAGCAACGACAACGATACACCGCGATGCATCTACC GGGACACGAATGCGGTTCCTCGTAACCTCGACTCGACGACGCTCCACCTT GGCCTCAAAGAAGGCCAAATAGCCTCCCGCATCGTCACGGTTGGCTGCCC AAGACGTGCCGCGCTGATTACCAAGGCACTAGATAGCACGCAACCAATCT TTGAGCACACCTCGCCGCGTGGTTTTATTACCTATACGGGAACCTTTGAG GGTGTAGGCGTTTCCATTGTTGCTATTGGGATGGGTTCGCCCATGATGGA TTTTTTTGTGCGGGAAGCCAGGCAAATTGTCGCAGGCCCCTTGATCATTG CCCGCTTTGGGACTTGTGGAGTGTTGCAGTCACATGTGACTGTCGGCGGG GTCATTGTTGCATCTCCTGGCTCCGTGCTGTGCATGCGCAACCCCGACGC CTTCTTGCCTCCCACCACCTCCACCACTACGACAAAAACGGTACCAACAG ACGCTGTCAACGATACGGTTCACACACCTCACCAACCATATCTGGTATTT GCACCTCAACCCTCTGATCGAGCACTATCCCATGCCTTGGTTTCTGAACT CATCGCCGAGCTAGGTCCTGCCCGAGTTACACAAGGAATGAACGCCTCTG CCTGCTCCTTCTACTCTTCCCAAGGCCGAGAAGACACCCTGTTCGACGAC CGGAACATGCACGTGCTCGACACACTGCGGACCCAGCATCCTTCGTTGTT AAGCATGGAAATGGAGACTTTTCAATTGTTTGCTTTGGCAAACGCCAGTC GGGGTACTGTTCGCGCGGCGGCCGCGAGTATTGGTGTCGCGAACCGTCCT ACAGGCGATGTGTGTGAACAGTCAGTTTTCAGTTGTTTGGAAGTTACAGG GGGCAGGGCAGTGGTAAGAGCGCTGGCGAGATTCGTGATGTAG
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Coding sequence (CDS) from alignment at chr3:1044669..1045661-

>NO03G03490.1 ID=NO03G03490.1|Name=NO03G03490.1|organism=Nannochloropsis oceanica|type=CDS|length=993bp|location=Sequence derived from alignment at chr3:1044669..1045661- (Nannochloropsis oceanica)
ATGGAGGCAACAAATGGAAAAAAGGGAGACACGCCTACTCCGACCACTGC
AGCCACCACTACCAGCAGCAACGACAACGATACACCGCGATGCATCTACC
GGGACACGAATGCGGTTCCTCGTAACCTCGACTCGACGACGCTCCACCTT
GGCCTCAAAGAAGGCCAAATAGCCTCCCGCATCGTCACGGTTGGCTGCCC
AAGACGTGCCGCGCTGATTACCAAGGCACTAGATAGCACGCAACCAATCT
TTGAGCACACCTCGCCGCGTGGTTTTATTACCTATACGGGAACCTTTGAG
GGTGTAGGCGTTTCCATTGTTGCTATTGGGATGGGTTCGCCCATGATGGA
TTTTTTTGTGCGGGAAGCCAGGCAAATTGTCGCAGGCCCCTTGATCATTG
CCCGCTTTGGGACTTGTGGAGTGTTGCAGTCACATGTGACTGTCGGCGGG
GTCATTGTTGCATCTCCTGGCTCCGTGCTGTGCATGCGCAACCCCGACGC
CTTCTTGCCTCCCACCACCTCCACCACTACGACAAAAACGGTACCAACAG
ACGCTGTCAACGATACGGTTCACACACCTCACCAACCATATCTGGTATTT
GCACCTCAACCCTCTGATCGAGCACTATCCCATGCCTTGGTTTCTGAACT
CATCGCCGAGCTAGGTCCTGCCCGAGTTACACAAGGAATGAACGCCTCTG
CCTGCTCCTTCTACTCTTCCCAAGGCCGAGAAGACACCCTGTTCGACGAC
CGGAACATGCACGTGCTCGACACACTGCGGACCCAGCATCCTTCGTTGTT
AAGCATGGAAATGGAGACTTTTCAATTGTTTGCTTTGGCAAACGCCAGTC
GGGGTACTGTTCGCGCGGCGGCCGCGAGTATTGGTGTCGCGAACCGTCCT
ACAGGCGATGTGTGTGAACAGTCAGTTTTCAGTTGTTTGGAAGTTACAGG
GGGCAGGGCAGTGGTAAGAGCGCTGGCGAGATTCGTGATGTAG
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Synonyms
Publications