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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr3 | genome | chr3:1035260..1039565 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO03G03460.1 vs.
Match: EWM29807.1 (gun4 domain protein [Nannochloropsis gaditana]) HSP 1 Score: 373.6 bits (958), Expect = 5.400e-100 Identity = 188/250 (75.20%), Postives = 207/250 (82.80%), Query Frame = 0
Query: 38 MHATMSIGTGALGLMWMLCVSQVVAFRPVVMLRATAARGGMITTASSCVALPVAISLPCKRLYSTIAESTDAASDQAAAEELEKDVLKSECGVDYVPLANMLLTGDFKAADQFTRDALIQIAGEDAQKRGYVYFTEVRGLPEADMATIEKLWLKYSKGKFGFTVQRAIWNQVTVGKDFERFCRKIGWNMMENGIERKLKWFGNSEFIYDLDKAPPGHLPLTSALRGTSLLKNLLTYPLWETDWNKEEKKE 288
M AT +G LGL+ + + QV AF P L A GM++T S L V SLPC+ L ST++ESTDA S + A +EKDVLKSECG+DYVPLANMLL GDFK ADQFTRDALIQIAGE+A+KRGYVYFTEV+GLPEADMATIEKLWLKYSKGKFG+TVQRAIWNQVTVGKDFERFCRKIGWN +ENGIERKLKWFG SEFIYDL+KAP GHLPLTSALRGTSLLKNLLTYPLW T+WNKEEKKE
Sbjct: 1 MRATKRVGASYLGLILLSSLHQVAAFSP---LAVPGASSGMLSTHSRGT-LKVKPSLPCRTLLSTVSESTDAPSSKKTAPTMEKDVLKSECGMDYVPLANMLLIGDFKGADQFTRDALIQIAGENARKRGYVYFTEVKGLPEADMATIEKLWLKYSKGKFGYTVQRAIWNQVTVGKDFERFCRKIGWNTVENGIERKLKWFGKSEFIYDLEKAPVGHLPLTSALRGTSLLKNLLTYPLWATEWNKEEKKE 246
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO03G03460.1 ID=NO03G03460.1|Name=NO03G03460.1|organism=Nannochloropsis oceanica|type=mRNA|length=3965bp ATGCTTGCAACCCTTCTTTGGTTCATTAAACTCTTTCCTTATCGGTCGAC AAAAAACATAAATTATCTCAATCTTTCTCTCGCATTAAAGCTTAGCCATT GTTCATCCGCAATGATTTCTCCGAATAACCTCAAAAGCGAGAGCCACGGC CGCGGCACCAGGGTCCGCATGCCCATGGGTCACAGATATCGGCACGTAAT TTGCCCTCCCCGCCATAGCCTCCATCGTTTTGGTCGCGTCCGCACCAGCT CTCGCGGCCGCTGCCGCTCCTTCCAACCCTTTACCGGCCAGCAAAGCCTC ACTTGCTGGGATCCAAGCGTCCAACATCGTGCGGTAGCCCGGCTTTGCGC CACTATAGAAAGACATACGCTCAACGGCGTGCTTCACACCGATTGCCCAC TGCTCCGGCGTAGGGATCATCGCCTGTTGCTCGGACAATGAACGGGCTAG CGCCCGAAAAAAGATTTCGAAGAGTGCTCCCGACGTCCCTCCCATAGAGT CGCTTACAGCATTAGCTACAGAGGTGACATAATCGGAGGCATTGCGCGGT TCCACATCCGCGGGAAGATCCATCGCGGCCTTCGCTCCACGCTTGAGCGT TACGCCGCAATCTCCGTCGCCCCCATAGCTGTCCAACTCATTCAAATAAC CCTCTTCTTTAATCAAAGCTGCTCCTACGGCTAAAGTGTTGTTTTGGTAC ATCTTGATGGCGTGAAGAAGTGAAGAAGAAGGCGATGTAGAGGCGGAGGA ATCGTCGGTATCAGCATTGCTTCTTTTGGGGGCAGGAGACAAAGGTATCG AGGCTCCTGTCGTTCCAGGCACGCGTACCTCCGCCGAGAGCCAACCTGGA GCTTTGGTGGGCGCGTCCAATCGAGCTAAGCACTCCGGCATTGCTTTCAA AATGGTCAGCGACACGCCAGCCATCTCCAAGGAAGTCATATAAGGCCCCA CAAACACACGGTGGACACGGGCAAAGACCGGTGCACTCTCCAGCACCTGC ACTGCCCGTCTGACCACAACATTTAACTCAATGAGTGAAGTAGCTCCCAG ATTGTTGACCAGCAGTGCCACGTCTTGATTTGGAGCCAGCGGAAGGTACC CGTGCCCTCCCTCACCCTCCTTGCTGATGATAGTCTGTATCATCCGCTCT ATCAAAACGTCGACAGGTTGCAGGGGCATGCGCTCGATCCCCTCCTCGCC GTGAATACCCATTCCCAGCTCCACCGTGTCTCCATCCAATCGCGCCGAAG GCGTTGAGCCCGGCACCGTACACACAGATAGTGCCAGGCCTAATGAGCCC ATGTTGGAAATGGCCTGCTCGGCCTCTGCCTTGACATGCATCAAATCCAA TCCCGCCGAGGCCGCAGCTCCCGCGATCTTATGGACCAAGACCGTCCCCG CTACCCCCCGTCGGCCGGTGATGCCCTTTGCTTGCGGCAAAGCGCAATCG TCCGCCACCACCACCATCTCCACTAGCAACCCCTCGCTCAAGGCTTGTTC GCGTGCCATGCCAAAATTCAGCAGGTCGCCCGTGTAACGCTTGACAATAA GCAAGGTGCCTCGAGGTCCAGTCACAGCCCGAATGGCTGCCAAAATGCTG CCTACGCTCGGCGAAGCAAACACATCCCCAAGCACAGCCGCACTCAGCAT GCCGTCCGCGACGAACCCCCCGTGGGCTGGCTCGTGTCCGCTGCCTCCGC CTGAAATTAATGCGACTTGGTAAGCTTTCACGTTAGCGTAATCGACCCGC AAGAGTACGTGCAGACCGTCGAGGCGTGCGAGCGTCTTAGGGTGAGCGAG CAGCATACCTTGAACGGCTTCCTCCACCAAACTCTCGGGCGCGTTGATGA GCTTCTTTGCCCGGTGCAGGGCGGTGGCGCTTGCCATGGCTGGTGTGGGG GAAAATAAAGATATGGGAGGTCATTCGATTGTCACGTAATGTTTTACAAA TGCACAAAACCTAAGCACCCCGCCAAGGGAGGGGGGGTGTTCGGCATGTT GACCTGCTTTGGCATGCATGCGCCATTAAAAGCAATTCCCCACGGCACCC ACCAAAAAGACAACAAGCCTTCGCCTGATCAACCCCATCCTCGGTACGAT TTCTTGAGGTAGCGCACGCCTTACAGGCAGGTGTGCCGTGCAATGCGGGG TGGAAGATGCACGGATGGGATGACGATAAAAAGATCTGAGACGGGAGGTC GCAGGAGTTCAGGAGGTTGGCCTGCACCACCACCGGTTGCACTATAATCC AGGGCGCCCTCCGGATTGGACGACCAGACAATGCAGTTGCCTGTGTGAGA GCATTGCCGATGAGGAAGGGGCTTGTAAGAGTGTGAGCGCCCCCTGCTTG TCCGACAGGATCGATTTTGCGCGGAGATTTTGGCGATCCGGCTGCCGGTC GGACCGGACCCCAGACCTTAGGATACACTCGATGCCTTTTCCAACTCCTG CTGCTCCCTTGCACTCCAATCCTCGTCTTCATGTAAACCCACAGTATGAG GTGTACGGCAGGAATGTCATGCATAAATGGTGACAGTGCGCAGGCCCGCT GGACTGCACATGTAAAGAAAGACCCAAAAGTTCCACATGACAAGTTGCAC TGCTGTAGCTATCATTCGATGGCCATCGATCCTAGCTAGGCGCGTCGCCT CACTTGTTCTTCTCCACGTCGTCACGCAACACAATGCACAGAAGGATATG CATGCCACTATGAGCATCGGGACCGGGGCCTTGGGCCTGATGTGGATGCT GTGCGTCTCTCAGGTAGTCGCTTTCAGACCAGTTGTCATGCTAAGAGCAA CGGCAGCACGAGGAGGCATGATCACGACCGCCTCTTCGTGTGTCGCCCTA CCAGTAGCCATATCGCTGCCATGCAAACGGCTTTACTCCACGATTGCCGA ATCAACGGACGCGGCCTCCGATCAGGCGGCCGCAGAAGAACTGGAGAAGG ACGTGCTCAAGTCCGAGTGCGGGGTGGACTATGTGCCCTTGGCCAACATG CTGCTTACCGGAGACTTCAAGGCCGCCGACCAATTTACCCGCGATGCTCT CATTCAGATTGCCGGGGAGGATGCGCAAAAGCGGGGATATGTGTATTTTA CTGAGGTAAGAGGCTTGCCGGAGGCGGACATGGCGACGATCGAGAAGCTC TGGCTCAAGTACAGCAAGGGCAAGTTTGGATTCACAGTCCAGCGCGCGAT CTGGAACCAAGTAACGGTGGGCAAGGATTTCGAGCGATTTTGCCGGAAGA TTGGGTGGAATATGATGGAGAACGGGATCGAGCGCAAGCTTAAGTGGTTT GGTAACTCTGAGTTTATCTACGATTTGGACAAGGCTCCCCCCGGCCACCT ACCTCTCACCTCGGCCCTACGCGGCACGTCTCTGTTGAAAAATTTGCTGA CTTACCCTCTGTGGGAGACGGATTGGAATAAAGAGGAGAAAAAAGAGTAG AAATGACATGAGATAGATGGAGTGGGAAGTCACGAAGGAAAGTGTGTGAA TAGGGGGCGACGACAGGGAGGAGAAGGAGGGCGTGTGGCGGGTGTGGCCG CGTGCTGGAGGAAGGATGCGTAAACGATTAGGAGAGTCCGGCAAGCGGTG CGTGCGTTCGAAAAGCGATGGAGGGATAAGTGGGACGAAGAGAAGCGGAG AGGGAACGACGGACGAAGAAGGGGTGTCGATGCACACATGCAGGAAAACG TCATTTTTGTTGCTGGACACAGCAAATCCACATTCCCGTTACAAAATGCT GACGAGAACAAATAATTTTGTGAAGGAGGCCAGTAACAGACGCGACATTA CCCCCCTTGAGGAGCAAAATAAATGGGGAGGGAAAGGTAGAGACCGAGTG AGGGAGAGAGAGAGAGAGACCCACGAGACAACACGACTAACAATGACAAG AAAAGGGGAAAAGGAGGGCATTTTGGTAAAGAATACATCTTTGGAACTTC ACGTGACAATTAGTT back to topprotein sequence of NO03G03460.1 >NO03G03460.1-protein ID=NO03G03460.1-protein|Name=NO03G03460.1|organism=Nannochloropsis oceanica|type=polypeptide|length=288bp MTSCTAVAIIRWPSILARRVASLVLLHVVTQHNAQKDMHATMSIGTGALG LMWMLCVSQVVAFRPVVMLRATAARGGMITTASSCVALPVAISLPCKRLY STIAESTDAASDQAAAEELEKDVLKSECGVDYVPLANMLLTGDFKAADQF TRDALIQIAGEDAQKRGYVYFTEVRGLPEADMATIEKLWLKYSKGKFGFT VQRAIWNQVTVGKDFERFCRKIGWNMMENGIERKLKWFGNSEFIYDLDKA PPGHLPLTSALRGTSLLKNLLTYPLWETDWNKEEKKE* back to topmRNA from alignment at chr3:1035260..1039565- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO03G03460.1 ID=NO03G03460.1|Name=NO03G03460.1|organism=Nannochloropsis oceanica|type=mRNA|length=4306bp|location=Sequence derived from alignment at chr3:1035260..1039565- (Nannochloropsis oceanica) ATGCTTGCAACCCTTCTTTGGTTCATTAAACTCTTTCCTTATCGGTCGAC
AAAAAACATAAATTATCTCAATCTTTCTCTCGCATTAAAGCTTAGCCATT
GTTCATCCGCAATGATTTCTCCGAATAACCTCAAAAGCGAGAGCCACGGC
CGCGGCACCAGGGTCCGCATGCCCATGGGTCACAGATATCGGCACGTAAT
TTGCCCTCCCCGCCATAGCCTCCATCGTTTTGGTCGCGTCCGCACCAGCT
CTCGCGGCCGCTGCCGCTCCTTCCAACCCTTTACCGGCCAGCAAAGCCTC
ACTTGCTGGGATCCAAGCGTCCAACATCGTGCGGTAGCCCGGCTTTGCGC
CACTATAGAAAGACATACGCTCAACGGCGTGCTTCACACCGATTGCCCAC
TGCTCCGGCGTAGGGATCATCGCCTGTTGCTCGGACAATGAACGGGCTAG
CGCCCGAAAAAAGATTTCGAAGAGTGCTCCCGACGTCCCTCCCATAGAGT
CGCTTACAGCATTAGCTACAGAGGTGACATAATCGGAGGCATTGCGCGGT
TCCACATCCGCGGGAAGATCCATCGCGGCCTTCGCTCCACGCTTGAGCGT
TACGCCGCAATCTCCGTCGCCCCCATAGCTGTCCAACTCATTCAAATAAC
CCTCTTCTTTAATCAAAGCTGCTCCTACGGCTAAAGTGTTGTTTTGGTAC
ATCTTGATGGCGTGAAGAAGTGAAGAAGAAGGCGATGTAGAGGCGGAGGA
ATCGTCGGTATCAGCATTGCTTCTTTTGGGGGCAGGAGACAAAGGTATCG
AGGCTCCTGTCGTTCCAGGCACGCGTACCTCCGCCGAGAGCCAACCTGGA
GCTTTGGTGGGCGCGTCCAATCGAGCTAAGCACTCCGGCATTGCTTTCAA
AATGGTCAGCGACACGCCAGCCATCTCCAAGGAAGTCATATAAGGCCCCA
CAAACACACGGTGGACACGGGCAAAGACCGGTGCACTCTCCAGCACCTGC
ACTGCCCGTCTGACCACAACATTTAACTCAATGAGTGAAGTAGCTCCCAG
ATTGTTGACCAGCAGTGCCACGTCTTGATTTGGAGCCAGCGGAAGGTACC
CGTGCCCTCCCTCACCCTCCTTGCTGATGATAGTCTGTATCATCCGCTCT
ATCAAAACGTCGACAGGTTGCAGGGGCATGCGCTCGATCCCCTCCTCGCC
GTGAATACCCATTCCCAGCTCCACCGTGTCTCCATCCAATCGCGCCGAAG
GCGTTGAGCCCGGCACCGTACACACAGATAGTGCCAGGCCTAATGAGCCC
ATGTTGGAAATGGCCTGCTCGGCCTCTGCCTTGACATGCATCAAATCCAA
TCCCGCCGAGGCCGCAGCTCCCGCGATCTTATGGACCAAGACCGTCCCCG
CTACCCCCCGTCGGCCGGTGATGCCCTTTGCTTGCGGCAAAGCGCAATCG
TCCGCCACCACCACCATCTCCACTAGCAACCCCTCGCTCAAGGCTTGTTC
GCGTGCCATGCCAAAATTCAGCAGGTCGCCCGTGTAACGCTTGACAATAA
GCAAGGTGCCTCGAGGTCCAGTCACAGCCCGAATGGCTGCCAAAATGCTG
CCTACGCTCGGCGAAGCAAACACATCCCCAAGCACAGCCGCACTCAGCAT
GCCGTCCGCGACGAACCCCCCGTGGGCTGGCTCGTGTCCGCTGCCTCCGC
CTGAAATTAATGCGACTTGGTAAGCTTTCACGTTAGCGTAATCGACCCGC
AAGAGTACGTGCAGACCGTCGAGGCGTGCGAGCGTCTTAGGGTGAGCGAG
CAGCATACCTTGAACGGCTTCCTCCACCAAACTCTCGGGCGCGTTGATGA
GCTTCTTTGCCCGGTGCAGGGCGGTGGCGCTTGCCATGGCTGGTGTGGGG
GAAAATAAAGATATGGGAGGTCATTCGATTGTCACGTAATGTTTTACAAA
TGCACAAAACCTAAGCACCCCGCCAAGGGAGGGGGGGTGTTCGGCATGTT
GACCTGCTTTGGCATGCATGCGCCATTAAAAGCAATTCCCCACGGCACCC
ACCAAAAAGACAACAAGCCTTCGCCTGATCAACCCCATCCTCGGTACGAT
TTCTTGAGGTAGCGCACGCCTTACAGGCAGGTGTGCCGTGCAATGCGGGG
TGGAAGATGCACGGATGGGATGACGATAAAAAGATCTGAGACGGGAGGTC
GCAGGAGTTCAGGAGGTTGGCCTGCACCACCACCGGTTGCACTATAATCC
AGGGCGCCCTCCGGATTGGACGACCAGACAATGCAGTTGCCTGTGTGAGA
GCATTGCCGATGAGGAAGGGGCTTGTAAGAGTGTGAGCGCCCCCTGCTTG
TCCGACAGGATCGATTTTGCGCGGAGATTTTGGCGATCCGGCTGCCGGTC
GGACCGGACCCCAGACCTTAGGATACACTCGATGCCTTTTCCAACTCCTG
CTGCTCCCTTGCACTCCAATCCTCGTCTTCATGTAAACCCACAGTATGAG
GTGTACGGCAGGAATGTCATGCATAAATGGTGACAGTGCGCAGGCCCGCT
GGACTGCACATGTAAAGAAAGACCCAAAAGTTCCACATGACAAGTTGCAC
TGCTGTAGCTATCATTCGATGGCCATCGATCCTAGCTAGGCGCGTCGCCT
CACTTGTTCTTCTCCACGTCGTCACGCAACACAATGCACAGAAGGATATG
CATGCCACTATGAGCATCGGGACCGGGGCCTTGGGCCTGATGTGGATGCT
GTGCGTCTCTCAGGTAGTCGCTTTCAGACCAGTTGTCATGCTAAGAGCAA
CGGCAGCACGAGGAGGCATGATCACGACCGCCTCTTCGTGTGTCGCCCTA
CCAGTAGCCATATCGCTGCCATGCAAACGGCTTTACTCCACGATTGCGTA
AGTACATGCAGGGATGATGGCAAAGGTCGTCGAAAAAGGGGCATAGGAGC
CCGGGCCTGGTCTCGCGCTCGGGAGAAATATTCCTTTGTACGAACAAAAT
GATCTTTCTGCTACTTCTACCATCGATGCCAGCATGCATACTCTGCGAGC
TTTCATGTTTATCTCCATACGTATGATGGTGCTTCTAGATTTGGTGATGT
CTTATTATATAGGTTTATCGAACCCCTCCTTTCTAATTCTATATCGCCTG
CACCCGCCACCACTCTCCGATCAAATTGCTACTTGAAGACATCTCTTCTC
TTTCTCCTCTATGACTCTCCTCACCATCACTACTTCAGCGAATCAACGGA
CGCGGCCTCCGATCAGGCGGCCGCAGAAGAACTGGAGAAGGACGTGCTCA
AGTCCGAGTGCGGGGTGGACTATGTGCCCTTGGCCAACATGCTGCTTACC
GGAGACTTCAAGGCCGCCGACCAATTTACCCGCGATGCTCTCATTCAGAT
TGCCGGGGAGGATGCGCAAAAGCGGGGATATGTGTATTTTACTGAGGTAA
GAGGCTTGCCGGAGGCGGACATGGCGACGATCGAGAAGCTCTGGCTCAAG
TACAGCAAGGGCAAGTTTGGATTCACAGTCCAGCGCGCGATCTGGAACCA
AGTAACGGTGGGCAAGGATTTCGAGCGATTTTGCCGGAAGATTGGGTGGA
ATATGATGGAGAACGGGATCGAGCGCAAGCTTAAGTGGTTTGGTAACTCT
GAGTTTATCTACGATTTGGACAAGGCTCCCCCCGGCCACCTACCTCTCAC
CTCGGCCCTACGCGGCACGTCTCTGTTGAAAAATTTGCTGACTTACCCTC
TGTGGGAGACGGATTGGAATAAAGAGGAGAAAAAAGAGTAGAAATGACAT
GAGATAGATGGAGTGGGAAGTCACGAAGGAAAGTGTGTGAATAGGGGGCG
ACGACAGGGAGGAGAAGGAGGGCGTGTGGCGGGTGTGGCCGCGTGCTGGA
GGAAGGATGCGTAAACGATTAGGAGAGTCCGGCAAGCGGTGCGTGCGTTC
GAAAAGCGATGGAGGGATAAGTGGGACGAAGAGAAGCGGAGAGGGAACGA
CGGACGAAGAAGGGGTGTCGATGCACACATGCAGGAAAACGTCATTTTTG
TTGCTGGACACAGCAAATCCACATTCCCGTTACAAAATGCTGACGAGAAC
AAATAATTTTGTGAAGGAGGCCAGTAACAGACGCGACATTACCCCCCTTG
AGGAGCAAAATAAATGGGGAGGGAAAGGTAGAGACCGAGTGAGGGAGAGA
GAGAGAGAGACCCACGAGACAACACGACTAACAATGACAAGAAAAGGGGA
AAAGGAGGGCATTTTGGTAAAGAATACATCTTTGGAACTTCACGTGACAA
TTAGTT back to topCoding sequence (CDS) from alignment at chr3:1035260..1039565- >NO03G03460.1 ID=NO03G03460.1|Name=NO03G03460.1|organism=Nannochloropsis oceanica|type=CDS|length=864bp|location=Sequence derived from alignment at chr3:1035260..1039565- (Nannochloropsis oceanica) ATGACAAGTTGCACTGCTGTAGCTATCATTCGATGGCCATCGATCCTAGC TAGGCGCGTCGCCTCACTTGTTCTTCTCCACGTCGTCACGCAACACAATG CACAGAAGGATATGCATGCCACTATGAGCATCGGGACCGGGGCCTTGGGC CTGATGTGGATGCTGTGCGTCTCTCAGGTAGTCGCTTTCAGACCAGTTGT CATGCTAAGAGCAACGGCAGCACGAGGAGGCATGATCACGACCGCCTCTT CGTGTGTCGCCCTACCAGTAGCCATATCGCTGCCATGCAAACGGCTTTAC TCCACGATTGCCGAATCAACGGACGCGGCCTCCGATCAGGCGGCCGCAGA AGAACTGGAGAAGGACGTGCTCAAGTCCGAGTGCGGGGTGGACTATGTGC CCTTGGCCAACATGCTGCTTACCGGAGACTTCAAGGCCGCCGACCAATTT ACCCGCGATGCTCTCATTCAGATTGCCGGGGAGGATGCGCAAAAGCGGGG ATATGTGTATTTTACTGAGGTAAGAGGCTTGCCGGAGGCGGACATGGCGA CGATCGAGAAGCTCTGGCTCAAGTACAGCAAGGGCAAGTTTGGATTCACA GTCCAGCGCGCGATCTGGAACCAAGTAACGGTGGGCAAGGATTTCGAGCG ATTTTGCCGGAAGATTGGGTGGAATATGATGGAGAACGGGATCGAGCGCA AGCTTAAGTGGTTTGGTAACTCTGAGTTTATCTACGATTTGGACAAGGCT CCCCCCGGCCACCTACCTCTCACCTCGGCCCTACGCGGCACGTCTCTGTT GAAAAATTTGCTGACTTACCCTCTGTGGGAGACGGATTGGAATAAAGAGG AGAAAAAAGAGTAG back to top
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