NO03G03400.1, NO03G03400.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO03G03400.1
Unique NameNO03G03400.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1595
Alignment locationchr3:1017016..1018610 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:1017016..1018610 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO03G03400.1 vs.
Match: EWM29775.1 (caax amino terminal protease family domain-containing protein [Nannochloropsis gaditana])

HSP 1 Score: 654.1 bits (1686), Expect = 3.600e-184
Identity = 347/487 (71.25%), Postives = 389/487 (79.88%), Query Frame = 0 
Query:   17 GSLVIIIVLASSASSSVAFGPPFRTALPRLHRISLPYGSSAGSSSFPNV--RRISLPCAPLSSPSGFANYRILPTLFTRPSSSE--DQEARQVDLSGQPRWRRAANHLFTAWRRIQHQRAFLMQPLQSSAMASPPGESGDAWGASELPSYKIRPDWAPAWVPTWAVTLHPLIQVVIMIALYFFHMLVLSKLAMPFPFQLVPNSHGLFQSIGMDSLAGLLVLGIMAYFRHSRGLPMRPIIFGDRPLPFNPPKKGRGKVWRILALLMVAYLTSGSASKWVEDVFGLSDLNVALGRAVQVLAGHLVWVTLGVAILKMQAGGPGRGPFFGKKSVWMKSTFNTYWLWWAIGGYYVSSLAFHVADTINQVVLPASAFEVDSVVTQMINPEGNDVMAMLVGSLAPCVSAPWWEEVLYRGFLLPALYLFYPPDVATLVSAVIFAAHHMSMSGMIPLTTLGYLWAVLYLLSGNLLVPIAIHSLWNSRVFLGSLLGI 500
            G  V++    SS +  +A        LPR    +LP      ++  P++  +  ++P   +S  SG  N+ +LP L +   S E   +   Q  ++ +     A    F A RR Q +    + PLQSSA ASP  E  ++W ASELPSY+ RP  APAW PTW VTLHPLIQ+++M+ALYFFHMLVLSK+AMPFPFQLVPN+HGLFQSIGMDSLAGLLVLG  AYFR +RGLP++P++FG RPLPFNPPK+GRGKVWRIL LLMVAYLTSGSASKWVEDVFGLS+LNVALGRAVQVLAGHLVWV LGV ILK QAG  G  PFFGKKSVWMKS++NTYWLWWAIGGYYVSSLAFHVADT+NQVVLPASAFEVDSVVTQMINPEGNDV+AMLVGSLAPCVSAPWWEEVLYRGFLLPALYLFYP DVATLVSAVIFAAHHMSMSGMIPLTTLGYLWAVLYLLSGNLLVPIAIHSLWNSRVFLGSLLGI
Sbjct:   15 GPKVLVAFTVSSCTWPLAVAFSSFNPLPRGGYPTLPPAGLQRNARGPSLLPQTFNIPAPSVSKFSGHMNH-VLPPLRSPQGSHEVGHRVGNQAQVACRTLSYLAVTGSFLARRRRQQRCLSRVHPLQSSAAASPMDEGEESWSASELPSYRERPRGAPAWTPTWIVTLHPLIQMLVMVALYFFHMLVLSKVAMPFPFQLVPNTHGLFQSIGMDSLAGLLVLGAAAYFRRARGLPLKPVVFGARPLPFNPPKRGRGKVWRILFLLMVAYLTSGSASKWVEDVFGLSELNVALGRAVQVLAGHLVWVLLGVGILKTQAGEGGDKPFFGKKSVWMKSSWNTYWLWWAIGGYYVSSLAFHVADTVNQVVLPASAFEVDSVVTQMINPEGNDVVAMLVGSLAPCVSAPWWEEVLYRGFLLPALYLFYPADVATLVSAVIFAAHHMSMSGMIPLTTLGYLWAVLYLLSGNLLVPIAIHSLWNSRVFLGSLLGI 500
The following BLAST results are available for this feature:
BLAST of NO03G03400.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29775.13.600e-18471.25caax amino terminal protease family domain-contain... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO03G03400NO03G03400Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO03G03400.1NO03G03400.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO03G03400.1.cds1NO03G03400.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO03G03400.1 ID=NO03G03400.1|Name=NO03G03400.1|organism=Nannochloropsis oceanica|type=mRNA|length=1595bp
ACAGGACAATAAGATGCCACCCTTCGCCCCTAACAGGGGAGGCTCGCGCT
GTCTCGGTTGTGGCAGCCTGGTGATCATCATCGTGCTCGCTTCATCAGCA
TCATCCTCGGTTGCCTTCGGCCCGCCTTTTCGCACTGCTTTGCCGCGTCT
ACACCGCATATCATTGCCCTACGGTAGCAGCGCCGGCAGCAGCTCGTTCC
CGAACGTGCGAAGAATCTCCTTGCCATGCGCACCCTTGTCTTCTCCTTCT
GGTTTCGCGAATTACCGCATATTGCCTACCCTCTTTACCCGGCCAAGCTC
GAGCGAGGACCAAGAAGCACGACAAGTCGACCTTTCCGGACAACCACGCT
GGCGTCGCGCTGCCAACCATCTATTTACAGCCTGGAGAAGAATACAGCAC
CAACGTGCATTCCTCATGCAACCCTTACAAAGCTCAGCCATGGCTTCACC
CCCTGGTGAAAGTGGGGACGCGTGGGGGGCGAGTGAATTGCCTTCCTACA
AAATCAGACCCGATTGGGCTCCAGCTTGGGTACCTACGTGGGCAGTAACG
CTGCATCCGCTCATTCAAGTCGTCATTATGATAGCTTTGTATTTTTTTCA
CATGCTCGTGTTGAGTAAACTGGCCATGCCCTTCCCCTTTCAGTTGGTGC
CGAATTCCCATGGTCTGTTTCAGAGCATTGGCATGGACTCACTTGCCGGC
TTGCTCGTCCTGGGCATCATGGCCTACTTTCGTCATTCACGCGGGCTGCC
CATGCGGCCTATTATTTTTGGGGATCGTCCGCTGCCGTTTAACCCCCCGA
AGAAAGGAAGGGGGAAGGTGTGGCGGATTTTGGCCTTGTTGATGGTGGCT
TATCTGACGTCAGGCTCGGCGAGCAAGTGGGTGGAGGATGTATTTGGCTT
GTCGGACCTAAATGTGGCCTTAGGGAGGGCGGTGCAAGTGTTGGCGGGGC
ACTTGGTGTGGGTGACTTTGGGGGTGGCAATTTTGAAGATGCAGGCGGGG
GGACCAGGAAGGGGACCTTTCTTCGGAAAGAAGAGTGTCTGGATGAAATC
GACTTTCAACACGTATTGGTTGTGGTGGGCCATTGGGGGTTACTACGTCT
CATCGTTGGCGTTCCACGTGGCAGACACCATCAATCAGGTGGTGTTGCCG
GCGTCGGCGTTTGAGGTTGACTCGGTTGTGACTCAGATGATTAATCCGGA
GGGGAATGATGTAATGGCTATGTTGGTTGGATCGCTTGCCCCCTGTGTGT
CGGCGCCTTGGTGGGAAGAGGTATTGTATCGTGGATTTTTATTGCCAGCC
TTGTATCTGTTTTATCCTCCCGATGTGGCGACGCTTGTGAGTGCGGTGAT
ATTTGCAGCGCACCACATGAGTATGAGTGGAATGATTCCCTTGACGACCT
TAGGTTACTTGTGGGCGGTCCTGTATCTTTTGTCGGGCAACCTACTCGTA
CCCATAGCCATTCACTCGCTTTGGAACTCGCGTGTGTTTTTGGGTTCTCT
TCTTGGTATCTAGTACGCACGGTAATGTGCAAAACATGTGTATCAGAATT
AAACGAGCTAAAGCAAAACGTTTGCTACCGTGATAGAGAGGAAAA
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protein sequence of NO03G03400.1

>NO03G03400.1-protein ID=NO03G03400.1-protein|Name=NO03G03400.1|organism=Nannochloropsis oceanica|type=polypeptide|length=500bp
MPPFAPNRGGSRCLGCGSLVIIIVLASSASSSVAFGPPFRTALPRLHRIS
LPYGSSAGSSSFPNVRRISLPCAPLSSPSGFANYRILPTLFTRPSSSEDQ
EARQVDLSGQPRWRRAANHLFTAWRRIQHQRAFLMQPLQSSAMASPPGES
GDAWGASELPSYKIRPDWAPAWVPTWAVTLHPLIQVVIMIALYFFHMLVL
SKLAMPFPFQLVPNSHGLFQSIGMDSLAGLLVLGIMAYFRHSRGLPMRPI
IFGDRPLPFNPPKKGRGKVWRILALLMVAYLTSGSASKWVEDVFGLSDLN
VALGRAVQVLAGHLVWVTLGVAILKMQAGGPGRGPFFGKKSVWMKSTFNT
YWLWWAIGGYYVSSLAFHVADTINQVVLPASAFEVDSVVTQMINPEGNDV
MAMLVGSLAPCVSAPWWEEVLYRGFLLPALYLFYPPDVATLVSAVIFAAH
HMSMSGMIPLTTLGYLWAVLYLLSGNLLVPIAIHSLWNSRVFLGSLLGI*
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mRNA from alignment at chr3:1017016..1018610+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO03G03400.1 ID=NO03G03400.1|Name=NO03G03400.1|organism=Nannochloropsis oceanica|type=mRNA|length=1595bp|location=Sequence derived from alignment at chr3:1017016..1018610+ (Nannochloropsis oceanica)
ACAGGACAATAAGATGCCACCCTTCGCCCCTAACAGGGGAGGCTCGCGCT
GTCTCGGTTGTGGCAGCCTGGTGATCATCATCGTGCTCGCTTCATCAGCA
TCATCCTCGGTTGCCTTCGGCCCGCCTTTTCGCACTGCTTTGCCGCGTCT
ACACCGCATATCATTGCCCTACGGTAGCAGCGCCGGCAGCAGCTCGTTCC
CGAACGTGCGAAGAATCTCCTTGCCATGCGCACCCTTGTCTTCTCCTTCT
GGTTTCGCGAATTACCGCATATTGCCTACCCTCTTTACCCGGCCAAGCTC
GAGCGAGGACCAAGAAGCACGACAAGTCGACCTTTCCGGACAACCACGCT
GGCGTCGCGCTGCCAACCATCTATTTACAGCCTGGAGAAGAATACAGCAC
CAACGTGCATTCCTCATGCAACCCTTACAAAGCTCAGCCATGGCTTCACC
CCCTGGTGAAAGTGGGGACGCGTGGGGGGCGAGTGAATTGCCTTCCTACA
AAATCAGACCCGATTGGGCTCCAGCTTGGGTACCTACGTGGGCAGTAACG
CTGCATCCGCTCATTCAAGTCGTCATTATGATAGCTTTGTATTTTTTTCA
CATGCTCGTGTTGAGTAAACTGGCCATGCCCTTCCCCTTTCAGTTGGTGC
CGAATTCCCATGGTCTGTTTCAGAGCATTGGCATGGACTCACTTGCCGGC
TTGCTCGTCCTGGGCATCATGGCCTACTTTCGTCATTCACGCGGGCTGCC
CATGCGGCCTATTATTTTTGGGGATCGTCCGCTGCCGTTTAACCCCCCGA
AGAAAGGAAGGGGGAAGGTGTGGCGGATTTTGGCCTTGTTGATGGTGGCT
TATCTGACGTCAGGCTCGGCGAGCAAGTGGGTGGAGGATGTATTTGGCTT
GTCGGACCTAAATGTGGCCTTAGGGAGGGCGGTGCAAGTGTTGGCGGGGC
ACTTGGTGTGGGTGACTTTGGGGGTGGCAATTTTGAAGATGCAGGCGGGG
GGACCAGGAAGGGGACCTTTCTTCGGAAAGAAGAGTGTCTGGATGAAATC
GACTTTCAACACGTATTGGTTGTGGTGGGCCATTGGGGGTTACTACGTCT
CATCGTTGGCGTTCCACGTGGCAGACACCATCAATCAGGTGGTGTTGCCG
GCGTCGGCGTTTGAGGTTGACTCGGTTGTGACTCAGATGATTAATCCGGA
GGGGAATGATGTAATGGCTATGTTGGTTGGATCGCTTGCCCCCTGTGTGT
CGGCGCCTTGGTGGGAAGAGGTATTGTATCGTGGATTTTTATTGCCAGCC
TTGTATCTGTTTTATCCTCCCGATGTGGCGACGCTTGTGAGTGCGGTGAT
ATTTGCAGCGCACCACATGAGTATGAGTGGAATGATTCCCTTGACGACCT
TAGGTTACTTGTGGGCGGTCCTGTATCTTTTGTCGGGCAACCTACTCGTA
CCCATAGCCATTCACTCGCTTTGGAACTCGCGTGTGTTTTTGGGTTCTCT
TCTTGGTATCTAGTACGCACGGTAATGTGCAAAACATGTGTATCAGAATT
AAACGAGCTAAAGCAAAACGTTTGCTACCGTGATAGAGAGGAAAA
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Coding sequence (CDS) from alignment at chr3:1017016..1018610+

>NO03G03400.1 ID=NO03G03400.1|Name=NO03G03400.1|organism=Nannochloropsis oceanica|type=CDS|length=1500bp|location=Sequence derived from alignment at chr3:1017016..1018610+ (Nannochloropsis oceanica)
ATGCCACCCTTCGCCCCTAACAGGGGAGGCTCGCGCTGTCTCGGTTGTGG
CAGCCTGGTGATCATCATCGTGCTCGCTTCATCAGCATCATCCTCGGTTG
CCTTCGGCCCGCCTTTTCGCACTGCTTTGCCGCGTCTACACCGCATATCA
TTGCCCTACGGTAGCAGCGCCGGCAGCAGCTCGTTCCCGAACGTGCGAAG
AATCTCCTTGCCATGCGCACCCTTGTCTTCTCCTTCTGGTTTCGCGAATT
ACCGCATATTGCCTACCCTCTTTACCCGGCCAAGCTCGAGCGAGGACCAA
GAAGCACGACAAGTCGACCTTTCCGGACAACCACGCTGGCGTCGCGCTGC
CAACCATCTATTTACAGCCTGGAGAAGAATACAGCACCAACGTGCATTCC
TCATGCAACCCTTACAAAGCTCAGCCATGGCTTCACCCCCTGGTGAAAGT
GGGGACGCGTGGGGGGCGAGTGAATTGCCTTCCTACAAAATCAGACCCGA
TTGGGCTCCAGCTTGGGTACCTACGTGGGCAGTAACGCTGCATCCGCTCA
TTCAAGTCGTCATTATGATAGCTTTGTATTTTTTTCACATGCTCGTGTTG
AGTAAACTGGCCATGCCCTTCCCCTTTCAGTTGGTGCCGAATTCCCATGG
TCTGTTTCAGAGCATTGGCATGGACTCACTTGCCGGCTTGCTCGTCCTGG
GCATCATGGCCTACTTTCGTCATTCACGCGGGCTGCCCATGCGGCCTATT
ATTTTTGGGGATCGTCCGCTGCCGTTTAACCCCCCGAAGAAAGGAAGGGG
GAAGGTGTGGCGGATTTTGGCCTTGTTGATGGTGGCTTATCTGACGTCAG
GCTCGGCGAGCAAGTGGGTGGAGGATGTATTTGGCTTGTCGGACCTAAAT
GTGGCCTTAGGGAGGGCGGTGCAAGTGTTGGCGGGGCACTTGGTGTGGGT
GACTTTGGGGGTGGCAATTTTGAAGATGCAGGCGGGGGGACCAGGAAGGG
GACCTTTCTTCGGAAAGAAGAGTGTCTGGATGAAATCGACTTTCAACACG
TATTGGTTGTGGTGGGCCATTGGGGGTTACTACGTCTCATCGTTGGCGTT
CCACGTGGCAGACACCATCAATCAGGTGGTGTTGCCGGCGTCGGCGTTTG
AGGTTGACTCGGTTGTGACTCAGATGATTAATCCGGAGGGGAATGATGTA
ATGGCTATGTTGGTTGGATCGCTTGCCCCCTGTGTGTCGGCGCCTTGGTG
GGAAGAGGTATTGTATCGTGGATTTTTATTGCCAGCCTTGTATCTGTTTT
ATCCTCCCGATGTGGCGACGCTTGTGAGTGCGGTGATATTTGCAGCGCAC
CACATGAGTATGAGTGGAATGATTCCCTTGACGACCTTAGGTTACTTGTG
GGCGGTCCTGTATCTTTTGTCGGGCAACCTACTCGTACCCATAGCCATTC
ACTCGCTTTGGAACTCGCGTGTGTTTTTGGGTTCTCTTCTTGGTATCTAG
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Synonyms
Publications