NO03G03330.1, NO03G03330.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO03G03330.1
Unique NameNO03G03330.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1758
Alignment locationchr3:992811..994918 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:992811..994918 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO03G03330.1 vs.
Match: CBN75620.1 (ef-hand domain (C-terminal) containing protein [Ectocarpus siliculosus])

HSP 1 Score: 159.5 bits (402), Expect = 2.200e-35
Identity = 110/360 (30.56%), Postives = 161/360 (44.72%), Query Frame = 0 
Query:   19 PLAPGLRRAPNPYMARALATSPGFSGRRQQQKVLTDSLGGLAMSSANGLDNSNHNFSHDAEIVASAVVDSPPPWLQKDDREVLRYYAYSHEPVYEGGDVNVKVFRVRYFTIYYFTSSGMLSVKEPAQVNSGITQGTYLRKQKV--PKATCQQQLE---------------GNERN---------------PR-FFNPSDFAVGATVAFYGRPLVITDADTYTREWHARTLGQPLGARLDSPVDGHRNQRLCMEQPLLVRRQKQEVRRQQEREQQGQDNAVAIPKTRKLLP------YPRRDTKVLRFFCAFGDERCVGGPHRCVLYYYVGNQEMEIKETKEQGRYHFPNFLNRQQVLSES 340
            P+ PG+RR   PY+       PG SG  +  K         +     G        +  + + A     S  P     +++VLR++AY  EPV+EGG ++   FRVR F+I YF S   +S++EP   NSG+TQG ++R+ +V  P  +C +                  G+E                 PR  + P DF VG  V  +GR   I DAD  TR+W  R LG+ L    + P DG+  +R                              V+ PK R ++P      + ++D KVLRFFC + D R  G     +LYYY+ N  +EIKE   +GR++FPN L RQ++  +S
Sbjct:   22 PMVPGIRRGHGPYVKMLQGARPGSSGMIRSSK---------SQPILRGYGEGTRPGTAGSSVPARTREGSCIPDYITKEKQVLRFFAYFQEPVHEGGSMDATGFRVRKFSIMYFLSDSTISIEEPRITNSGLTQGKFMRRLQVTRPLNSCARDARSAGGSATPVRATGGGGDEGGVMGGCSGKGGATTPPPRDIYAPGDFGVGEEVWIHGRRFRIVDADLTTRQWFQRNLGRSLKPTENYPEDGYGAERA----------------------------KVSAPKKRSMMPAREKGEFYKKDRKVLRFFCKYKDCRLQGDKRDYILYYYLLNDTIEIKEVAAEGRHNFPNLLRRQKLPKDS 344
The following BLAST results are available for this feature:
BLAST of NO03G03330.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
CBN75620.12.200e-3530.56ef-hand domain (C-terminal) containing protein [Ec... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO03G03330NO03G03330Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO03G03330.1NO03G03330.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO03G03330.1.cds1NO03G03330.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO03G03330.1.cds2NO03G03330.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO03G03330.1.cds3NO03G03330.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO03G03330.1 ID=NO03G03330.1|Name=NO03G03330.1|organism=Nannochloropsis oceanica|type=mRNA|length=1758bp
GATCTAGCACCCTTAACGATGCTGGGGTGGGCAGGGGGATGTGTTGTGGG
TGTGAGAAGCAAAACAGGAAGGCAGTATGTTGTGCTTTTCAACAGAGTTC
TGCTATTAATGTGATGATGTCACGATGTGTGTGTGACTCACAACGACTTA
CGAAATGCAGGCGATTCGCTTTTTTGATCGGCGCCCCCCCCAAGAAAGTA
CTTAAATTATGAATGCATGCAAGGATGTCAGCAAATGCTCGCTCTTTAAT
CAGAACCGTGCATTTTGACAAAGGAGACCGGCCTTACTGGCCCATAGCCA
AACTCACTCACTACTCACGGCCCATGCCACTTTTTGCACGCTACGTCTTT
TTCCAGCTCCTTTTGTCCAAATTCTCACGGCATACTTTCACCTATTTCCT
ACTTTTTATATTTGGGCAGAGCCCGTCCCGCAAAAATGAATCAGGGCTCA
CGACGACCTGCTGGGGGGGAAGAGGAGGAGACCGTCCTCCCGTTGGCTCC
CGGCCTGCGGCGGGCCCCGAACCCTTACATGGCGCGCGCCTTAGCCACGT
CCCCAGGCTTTAGCGGGCGCAGACAGCAGCAGAAGGTTTTGACAGATTCG
CTTGGCGGGCTCGCCATGTCTTCGGCCAATGGTCTTGACAACAGCAATCA
CAATTTTTCCCATGATGCTGAAATTGTCGCCTCTGCTGTGGTGGACTCGC
CTCCCCCCTGGTTGCAGAAGGACGACCGAGAAGTGCTGAGGTATTACGCG
TACTCCCATGAGCCTGTTTACGAAGGTGGGGATGTGAATGTGAAAGTGTT
TCGGGTCCGATACTTCACCATCTACTATTTTACTTCTTCGGGGATGCTTT
CTGTGAAAGAGCCCGCACAAGTGAACTCGGGCATCACACAAGGCACCTAT
TTGCGCAAGCAAAAGGTGCCCAAGGCCACCTGTCAGCAGCAACTTGAGGG
CAACGAGCGAAATCCTCGCTTTTTCAACCCGTCGGACTTCGCTGTTGGTG
CCACTGTGGCATTTTACGGTCGGCCCTTGGTCATAACAGATGCAGACACG
TACACGCGCGAGTGGCATGCGCGGACATTGGGTCAGCCACTTGGAGCGCG
GCTCGACAGTCCCGTCGACGGACATCGTAATCAGCGGCTTTGCATGGAAC
AACCTTTGTTGGTGCGTCGCCAAAAGCAGGAAGTGCGGCGGCAGCAAGAG
CGAGAGCAGCAGGGGCAAGATAATGCGGTCGCCATACCGAAAACAAGAAA
GCTCCTACCTTACCCACGACGGGACACCAAAGTATTGCGCTTTTTCTGTG
CATTCGGAGATGAGCGCTGTGTTGGGGGCCCTCACCGTTGTGTGCTCTAC
TATTACGTGGGCAACCAAGAGATGGAGATCAAGGAGACAAAGGAGCAGGG
TCGGTACCATTTTCCCAACTTCTTAAACCGGCAACAGGTCTTGTCGGAAT
CCGGTCAAGTGTATCAGGCAGAAGACTTGCGGTGCGGGGATTTTATAAAG
GTGTACGGACGGCAACTCCTCTTGGTATTCTGCGATGCAAGTACTGTCGA
GTGGTACGCAACCAGAAGCATTTCGCAGGTGCCGTTGCCAATCACCTCAA
GCGACTCTGCAGGCCCTCCTTCCAACGCCACCACGAGGGTTTGACGTATT
GAGCACATTCTCTACTCTCAAGGGCATTTTCCGAAGTTTTGCACAGACAA
TGCGCTGCATCCGATCTGATTGTTAAAAGAATCCGCCCGGATCTGACGAT
TTCAGATG
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protein sequence of NO03G03330.1

>NO03G03330.1-protein ID=NO03G03330.1-protein|Name=NO03G03330.1|organism=Nannochloropsis oceanica|type=polypeptide|length=403bp
MNQGSRRPAGGEEEETVLPLAPGLRRAPNPYMARALATSPGFSGRRQQQK
VLTDSLGGLAMSSANGLDNSNHNFSHDAEIVASAVVDSPPPWLQKDDREV
LRYYAYSHEPVYEGGDVNVKVFRVRYFTIYYFTSSGMLSVKEPAQVNSGI
TQGTYLRKQKVPKATCQQQLEGNERNPRFFNPSDFAVGATVAFYGRPLVI
TDADTYTREWHARTLGQPLGARLDSPVDGHRNQRLCMEQPLLVRRQKQEV
RRQQEREQQGQDNAVAIPKTRKLLPYPRRDTKVLRFFCAFGDERCVGGPH
RCVLYYYVGNQEMEIKETKEQGRYHFPNFLNRQQVLSESGQVYQAEDLRC
GDFIKVYGRQLLLVFCDASTVEWYATRSISQVPLPITSSDSAGPPSNATT
RV*
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mRNA from alignment at chr3:992811..994918+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO03G03330.1 ID=NO03G03330.1|Name=NO03G03330.1|organism=Nannochloropsis oceanica|type=mRNA|length=2108bp|location=Sequence derived from alignment at chr3:992811..994918+ (Nannochloropsis oceanica)
GATCTAGCACCCTTAACGATGCTGGGGTGGGCAGGGGGATGTGTTGTGGG
TGTGAGAAGCAAAACAGGAAGGCAGTATGTTGTGCTTTTCAACAGAGTTC
TGCTATTAATGTGATGATGTCACGATGTGTGTGTGACTCACAACGACTTA
CGAAATGCAGGCGATTCGCTTTTTTGATCGGCGCCCCCCCCAAGAAAGTA
CTTAAATTATGAATGCATGCAAGGATGTCAGCAAATGCTCGCTCTTTAAT
CAGAACCGTGCATTTTGACAAAGGAGACCGGCCTTACTGGCCCATAGCCA
AACTCACTCACTACTCACGGCCCATGCCACTTTTTGCACGCTACGTCTTT
TTCCAGCTCCTTTTGTCCAAATTCTCACGGCATACTTTCACCTATTTCCT
ACTTTTTATATTTGGGCAGAGCCCGTCCCGCAAAAATGAATCAGGGCTCA
CGACGACCTGCTGGGGGGGAAGAGGAGGAGACCGTCCTCCCGTTGGCTCC
CGGCCTGCGGCGGGCCCCGAACCCTTACATGGCGCGCGCCTTAGCCACGT
CCCCAGGCTTTAGCGGGCGCAGACAGCAGCAGAAGGTTTTGACAGATTCG
CTTGTACGTGCCATCCTCGACACCTTTTCTCTACTCTTGTTGGGATGAAC
CCGTCTTCTTCCTCACTATTCATTACCACCACCGGTTTTCCTCAAACACA
GGGCGGGCTCGCCATGTCTTCGGCCAATGGTCTTGACAACAGCAATCACA
ATTTTTCCCATGATGCTGAAATTGTCGCCTCTGCTGTGGTGGACTCGCCT
CCCCCCTGGTTGCAGAAGGACGACCGAGAAGTGCTGAGGTATTACGCGTA
CTCCCATGAGCCTGTTTACGAAGGTGGGGATGTGAATGTGAAAGTGTTTC
GGGTCCGATACTTCACCATCTACTATTTTACTTCTTCGGGTATGTACGTT
TTTGTTGCCATTGGTGAAGTCGAACGGATACTTTATAGATGGCAAATGAA
GATTGAAATAGAAATGTGTTGGGCGGCCTTCGTGCACATTATCACAGTAC
CTGTTACTTGGATAATATATACAGCTTGCATGCACGCCGGTTGCAAGCAC
GCACAAATGGACTGCCTGATAGAGACTAACTTCACGCGCTTTATACATGC
TCGCTCAAACATGAATTTCTAATCGCATCTCTGAACCTTAGGGATGCTTT
CTGTGAAAGAGCCCGCACAAGTGAACTCGGGCATCACACAAGGCACCTAT
TTGCGCAAGCAAAAGGTGCCCAAGGCCACCTGTCAGCAGCAACTTGAGGG
CAACGAGCGAAATCCTCGCTTTTTCAACCCGTCGGACTTCGCTGTTGGTG
CCACTGTGGCATTTTACGGTCGGCCCTTGGTCATAACAGATGCAGACACG
TACACGCGCGAGTGGCATGCGCGGACATTGGGTCAGCCACTTGGAGCGCG
GCTCGACAGTCCCGTCGACGGACATCGTAATCAGCGGCTTTGCATGGAAC
AACCTTTGTTGGTGCGTCGCCAAAAGCAGGAAGTGCGGCGGCAGCAAGAG
CGAGAGCAGCAGGGGCAAGATAATGCGGTCGCCATACCGAAAACAAGAAA
GCTCCTACCTTACCCACGACGGGACACCAAAGTATTGCGCTTTTTCTGTG
CATTCGGAGATGAGCGCTGTGTTGGGGGCCCTCACCGTTGTGTGCTCTAC
TATTACGTGGGCAACCAAGAGATGGAGATCAAGGAGACAAAGGAGCAGGG
TCGGTACCATTTTCCCAACTTCTTAAACCGGCAACAGGTCTTGTCGGAAT
CCGGTCAAGTGTATCAGGCAGAAGACTTGCGGTGCGGGGATTTTATAAAG
GTGTACGGACGGCAACTCCTCTTGGTATTCTGCGATGCAAGTACTGTCGA
GTGGTACGCAACCAGAAGCATTTCGCAGGTGCCGTTGCCAATCACCTCAA
GCGACTCTGCAGGCCCTCCTTCCAACGCCACCACGAGGGTTTGACGTATT
GAGCACATTCTCTACTCTCAAGGGCATTTTCCGAAGTTTTGCACAGACAA
TGCGCTGCATCCGATCTGATTGTTAAAAGAATCCGCCCGGATCTGACGAT
TTCAGATG
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Coding sequence (CDS) from alignment at chr3:992811..994918+

>NO03G03330.1 ID=NO03G03330.1|Name=NO03G03330.1|organism=Nannochloropsis oceanica|type=CDS|length=1209bp|location=Sequence derived from alignment at chr3:992811..994918+ (Nannochloropsis oceanica)
ATGAATCAGGGCTCACGACGACCTGCTGGGGGGGAAGAGGAGGAGACCGT
CCTCCCGTTGGCTCCCGGCCTGCGGCGGGCCCCGAACCCTTACATGGCGC
GCGCCTTAGCCACGTCCCCAGGCTTTAGCGGGCGCAGACAGCAGCAGAAG
GTTTTGACAGATTCGCTTGGCGGGCTCGCCATGTCTTCGGCCAATGGTCT
TGACAACAGCAATCACAATTTTTCCCATGATGCTGAAATTGTCGCCTCTG
CTGTGGTGGACTCGCCTCCCCCCTGGTTGCAGAAGGACGACCGAGAAGTG
CTGAGGTATTACGCGTACTCCCATGAGCCTGTTTACGAAGGTGGGGATGT
GAATGTGAAAGTGTTTCGGGTCCGATACTTCACCATCTACTATTTTACTT
CTTCGGGGATGCTTTCTGTGAAAGAGCCCGCACAAGTGAACTCGGGCATC
ACACAAGGCACCTATTTGCGCAAGCAAAAGGTGCCCAAGGCCACCTGTCA
GCAGCAACTTGAGGGCAACGAGCGAAATCCTCGCTTTTTCAACCCGTCGG
ACTTCGCTGTTGGTGCCACTGTGGCATTTTACGGTCGGCCCTTGGTCATA
ACAGATGCAGACACGTACACGCGCGAGTGGCATGCGCGGACATTGGGTCA
GCCACTTGGAGCGCGGCTCGACAGTCCCGTCGACGGACATCGTAATCAGC
GGCTTTGCATGGAACAACCTTTGTTGGTGCGTCGCCAAAAGCAGGAAGTG
CGGCGGCAGCAAGAGCGAGAGCAGCAGGGGCAAGATAATGCGGTCGCCAT
ACCGAAAACAAGAAAGCTCCTACCTTACCCACGACGGGACACCAAAGTAT
TGCGCTTTTTCTGTGCATTCGGAGATGAGCGCTGTGTTGGGGGCCCTCAC
CGTTGTGTGCTCTACTATTACGTGGGCAACCAAGAGATGGAGATCAAGGA
GACAAAGGAGCAGGGTCGGTACCATTTTCCCAACTTCTTAAACCGGCAAC
AGGTCTTGTCGGAATCCGGTCAAGTGTATCAGGCAGAAGACTTGCGGTGC
GGGGATTTTATAAAGGTGTACGGACGGCAACTCCTCTTGGTATTCTGCGA
TGCAAGTACTGTCGAGTGGTACGCAACCAGAAGCATTTCGCAGGTGCCGT
TGCCAATCACCTCAAGCGACTCTGCAGGCCCTCCTTCCAACGCCACCACG
AGGGTTTGA
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Synonyms
Publications