NO03G03320.1, NO03G03320.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO03G03320.1
Unique NameNO03G03320.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1680
Alignment locationchr3:989491..991170 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:989491..991170 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO03G03320.1 vs.
Match: EWM29777.1 (peptidyl-prolyl cis-trans isomerase cyclophilin type [Nannochloropsis gaditana])

HSP 1 Score: 801.2 bits (2068), Expect = 2.000e-228
Identity = 416/568 (73.24%), Postives = 473/568 (83.27%), Query Frame = 0 
Query:    1 MRGLLPALLPVCLLFFILPASSAFIRMPL-PSSTSTSRRR-HDSFPGLAQTAPSEDQPPPPLSKSTPLPP-SPYRSHRTSRVAQNWSTLSRRRAIGVASALVPALLTIAAPTPGKKGVAQAALEEFPWVTKGGLLDGVLPESVLVESLPLDNQAIKSMGQALSRINELRGLNVLQGTGFCNEAGQVQADLSFVAPESHATGANGTTAFDAMESANGEDISTFRWAKIKGLAENVRATYNREKDAFPYALTIRPNTTAESQSRRRARFANELLLLDDAIASLENATKRESVSDTLRYQEESLLHLGHLGELMVAKFPFSPPKNDDRREDDYFNLPRLFGRAEATFFVRELPKE----NGAKDDE--LRMGNITIVVDGFNAPISAGNFIDLCQRGFYNRLPLVKEKVRSASKEGGEVELVVGGRYKTGFIDPITGKQRRVPLEVMRAEAEGNKPFYGQARNTGIFTRAPPLLSYRTPRAVGLLHPEQDGNGANSEFFWLKDDARCVDSAKGLDGKFTLIGYVVGGGREDDLFPYLNEGFQVESVQVAWGYDHLVRSRVGFIDILLQGDE 560
            MRG  PA+ P  LL F LP S A+   PL PS T  +R +   +F   +++ PSED  P    KS+ +P  +P  +  + R A+ W+T+SRR A+  AS L+PAL+ +  P  G +G AQAALEEFPWVTKGGLLDGVLPESVLVESLPL+NQAIK MGQALSRINELRGLNVLQG+G CNEAGQV ADLSFV   +   G   TTA  A ++    DISTFRW+KIKGLAENVRATYNREKDAFPYALTIRPNTTAESQ+RRR RFANELLLLD AI++LENAT+ ESV+DTLRYQEESLLHLGHLGELMVAKFPFSPPKNDDRREDDYFNLPRLFGRAE  FF++EL K+    NG K++   L+  N+T++VDGFNAPISAGNFIDLCQRGFYNRLPLV EKVRS +K+  EVELVVGGRYKTGF+DPITGKQRRVPLEVMRAE EGN+PFYGQARNTG+FTRAPPLLSYRTPRA+GLLHPEQDGNGANSEFFWL+ DARCV++AK LDGKFTLIGYVVGGGRE+D+ P+L++ FQ+ESVQV+WGYDHLVRSRVGFIDILLQGDE
Sbjct:    7 MRGR-PAIWPTYLLTFTLPMSFAWFPTPLHPSHTPVARGQIRGTFS--SRSTPSEDACPTEYPKSSSIPAETPSDTPPSGRPARAWNTISRRGAVAAASTLIPALINVGIPAAGGEGRAQAALEEFPWVTKGGLLDGVLPESVLVESLPLNNQAIKGMGQALSRINELRGLNVLQGSGLCNEAGQVIADLSFVTAATSEPGMLNTTA--AEDNGEPGDISTFRWSKIKGLAENVRATYNREKDAFPYALTIRPNTTAESQARRRVRFANELLLLDLAISNLENATQHESVADTLRYQEESLLHLGHLGELMVAKFPFSPPKNDDRREDDYFNLPRLFGRAEVIFFLKELGKDKEGSNGNKEENGALKTANMTVIVDGFNAPISAGNFIDLCQRGFYNRLPLVTEKVRSGNKDDQEVELVVGGRYKTGFVDPITGKQRRVPLEVMRAEPEGNRPFYGQARNTGLFTRAPPLLSYRTPRAIGLLHPEQDGNGANSEFFWLQRDARCVETAKSLDGKFTLIGYVVGGGRENDILPFLDDSFQIESVQVSWGYDHLVRSRVGFIDILLQGDE 569
The following BLAST results are available for this feature:
BLAST of NO03G03320.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29777.12.000e-22873.24peptidyl-prolyl cis-trans isomerase cyclophilin ty... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO03G03320NO03G03320Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO03G03320.1NO03G03320.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO03G03320.1.cds1NO03G03320.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO03G03320.1 ID=NO03G03320.1|Name=NO03G03320.1|organism=Nannochloropsis oceanica|type=mRNA|length=1680bp
ATGCGTGGCCTCCTCCCAGCCCTGCTGCCTGTTTGCCTCCTCTTCTTTAT
CCTACCCGCATCGTCAGCCTTCATCCGCATGCCTCTCCCCTCCTCTACCT
CCACGTCGCGTAGAAGACATGATTCTTTCCCGGGCTTAGCACAGACAGCA
CCCTCAGAGGACCAGCCACCACCGCCATTATCGAAATCAACACCACTACC
CCCGTCACCCTACCGATCCCACCGCACCAGTCGAGTTGCGCAAAACTGGA
GCACTCTGAGCCGGCGTAGAGCCATAGGTGTAGCTTCCGCATTAGTCCCT
GCCCTGCTGACGATTGCCGCACCAACACCAGGCAAGAAGGGAGTTGCACA
AGCAGCGCTTGAAGAGTTCCCATGGGTGACCAAAGGCGGGCTCCTTGACG
GAGTACTACCCGAATCAGTGCTCGTCGAGTCCCTTCCCTTAGATAATCAA
GCCATCAAGAGCATGGGGCAAGCACTTAGTAGGATCAATGAGTTGCGGGG
GTTGAACGTGCTGCAAGGAACCGGGTTCTGTAACGAGGCAGGTCAAGTCC
AGGCGGACCTCAGTTTCGTCGCACCCGAGTCACACGCAACAGGAGCCAAC
GGAACAACGGCATTTGATGCAATGGAAAGCGCCAACGGTGAAGACATATC
AACCTTTCGTTGGGCAAAAATCAAAGGACTGGCTGAAAATGTACGTGCAA
CGTACAACAGGGAAAAGGACGCTTTTCCTTATGCCTTAACCATCCGACCC
AACACTACCGCCGAGTCGCAATCCCGGCGCCGGGCACGGTTTGCTAACGA
GCTATTGTTGCTAGATGATGCAATTGCAAGCTTGGAGAATGCGACAAAAA
GGGAAAGTGTATCGGATACGTTGAGGTACCAAGAGGAGTCTTTGCTGCAT
CTTGGGCATTTAGGCGAGTTGATGGTGGCCAAATTTCCTTTCTCTCCGCC
CAAGAATGATGATCGTCGAGAAGACGATTATTTTAATTTGCCGCGGTTGT
TTGGGCGGGCGGAGGCGACGTTCTTTGTGAGGGAATTGCCGAAAGAAAAT
GGTGCGAAGGATGACGAGCTCCGAATGGGAAATATCACTATTGTCGTCGA
CGGGTTCAATGCGCCCATTTCGGCGGGTAACTTTATAGACTTATGCCAGC
GGGGATTTTATAACCGATTGCCGCTGGTGAAGGAGAAGGTTCGGAGTGCG
AGTAAGGAGGGAGGCGAGGTGGAGCTGGTGGTGGGGGGGAGGTACAAGAC
AGGGTTTATTGACCCCATTACGGGAAAACAACGCCGGGTGCCCTTGGAAG
TAATGCGTGCGGAGGCGGAGGGGAACAAACCTTTTTATGGGCAGGCAAGA
AATACTGGGATATTCACACGGGCGCCGCCTTTGTTGAGCTATCGGACCCC
ACGAGCGGTGGGCTTGCTACACCCAGAGCAGGACGGAAACGGCGCGAATA
GCGAATTTTTTTGGTTGAAAGATGACGCGCGGTGTGTGGATTCGGCGAAG
GGGCTTGACGGAAAATTTACATTGATTGGTTATGTGGTGGGGGGGGGCAG
GGAGGATGACCTGTTCCCGTATTTGAATGAGGGATTCCAGGTGGAGAGCG
TGCAGGTAGCGTGGGGGTATGATCATTTGGTCCGTTCCCGAGTAGGATTT
ATTGATATTTTGCTGCAGGGTGACGAGTAA
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protein sequence of NO03G03320.1

>NO03G03320.1-protein ID=NO03G03320.1-protein|Name=NO03G03320.1|organism=Nannochloropsis oceanica|type=polypeptide|length=560bp
MRGLLPALLPVCLLFFILPASSAFIRMPLPSSTSTSRRRHDSFPGLAQTA
PSEDQPPPPLSKSTPLPPSPYRSHRTSRVAQNWSTLSRRRAIGVASALVP
ALLTIAAPTPGKKGVAQAALEEFPWVTKGGLLDGVLPESVLVESLPLDNQ
AIKSMGQALSRINELRGLNVLQGTGFCNEAGQVQADLSFVAPESHATGAN
GTTAFDAMESANGEDISTFRWAKIKGLAENVRATYNREKDAFPYALTIRP
NTTAESQSRRRARFANELLLLDDAIASLENATKRESVSDTLRYQEESLLH
LGHLGELMVAKFPFSPPKNDDRREDDYFNLPRLFGRAEATFFVRELPKEN
GAKDDELRMGNITIVVDGFNAPISAGNFIDLCQRGFYNRLPLVKEKVRSA
SKEGGEVELVVGGRYKTGFIDPITGKQRRVPLEVMRAEAEGNKPFYGQAR
NTGIFTRAPPLLSYRTPRAVGLLHPEQDGNGANSEFFWLKDDARCVDSAK
GLDGKFTLIGYVVGGGREDDLFPYLNEGFQVESVQVAWGYDHLVRSRVGF
IDILLQGDE*
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mRNA from alignment at chr3:989491..991170+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO03G03320.1 ID=NO03G03320.1|Name=NO03G03320.1|organism=Nannochloropsis oceanica|type=mRNA|length=1680bp|location=Sequence derived from alignment at chr3:989491..991170+ (Nannochloropsis oceanica)
ATGCGTGGCCTCCTCCCAGCCCTGCTGCCTGTTTGCCTCCTCTTCTTTAT
CCTACCCGCATCGTCAGCCTTCATCCGCATGCCTCTCCCCTCCTCTACCT
CCACGTCGCGTAGAAGACATGATTCTTTCCCGGGCTTAGCACAGACAGCA
CCCTCAGAGGACCAGCCACCACCGCCATTATCGAAATCAACACCACTACC
CCCGTCACCCTACCGATCCCACCGCACCAGTCGAGTTGCGCAAAACTGGA
GCACTCTGAGCCGGCGTAGAGCCATAGGTGTAGCTTCCGCATTAGTCCCT
GCCCTGCTGACGATTGCCGCACCAACACCAGGCAAGAAGGGAGTTGCACA
AGCAGCGCTTGAAGAGTTCCCATGGGTGACCAAAGGCGGGCTCCTTGACG
GAGTACTACCCGAATCAGTGCTCGTCGAGTCCCTTCCCTTAGATAATCAA
GCCATCAAGAGCATGGGGCAAGCACTTAGTAGGATCAATGAGTTGCGGGG
GTTGAACGTGCTGCAAGGAACCGGGTTCTGTAACGAGGCAGGTCAAGTCC
AGGCGGACCTCAGTTTCGTCGCACCCGAGTCACACGCAACAGGAGCCAAC
GGAACAACGGCATTTGATGCAATGGAAAGCGCCAACGGTGAAGACATATC
AACCTTTCGTTGGGCAAAAATCAAAGGACTGGCTGAAAATGTACGTGCAA
CGTACAACAGGGAAAAGGACGCTTTTCCTTATGCCTTAACCATCCGACCC
AACACTACCGCCGAGTCGCAATCCCGGCGCCGGGCACGGTTTGCTAACGA
GCTATTGTTGCTAGATGATGCAATTGCAAGCTTGGAGAATGCGACAAAAA
GGGAAAGTGTATCGGATACGTTGAGGTACCAAGAGGAGTCTTTGCTGCAT
CTTGGGCATTTAGGCGAGTTGATGGTGGCCAAATTTCCTTTCTCTCCGCC
CAAGAATGATGATCGTCGAGAAGACGATTATTTTAATTTGCCGCGGTTGT
TTGGGCGGGCGGAGGCGACGTTCTTTGTGAGGGAATTGCCGAAAGAAAAT
GGTGCGAAGGATGACGAGCTCCGAATGGGAAATATCACTATTGTCGTCGA
CGGGTTCAATGCGCCCATTTCGGCGGGTAACTTTATAGACTTATGCCAGC
GGGGATTTTATAACCGATTGCCGCTGGTGAAGGAGAAGGTTCGGAGTGCG
AGTAAGGAGGGAGGCGAGGTGGAGCTGGTGGTGGGGGGGAGGTACAAGAC
AGGGTTTATTGACCCCATTACGGGAAAACAACGCCGGGTGCCCTTGGAAG
TAATGCGTGCGGAGGCGGAGGGGAACAAACCTTTTTATGGGCAGGCAAGA
AATACTGGGATATTCACACGGGCGCCGCCTTTGTTGAGCTATCGGACCCC
ACGAGCGGTGGGCTTGCTACACCCAGAGCAGGACGGAAACGGCGCGAATA
GCGAATTTTTTTGGTTGAAAGATGACGCGCGGTGTGTGGATTCGGCGAAG
GGGCTTGACGGAAAATTTACATTGATTGGTTATGTGGTGGGGGGGGGCAG
GGAGGATGACCTGTTCCCGTATTTGAATGAGGGATTCCAGGTGGAGAGCG
TGCAGGTAGCGTGGGGGTATGATCATTTGGTCCGTTCCCGAGTAGGATTT
ATTGATATTTTGCTGCAGGGTGACGAGTAA
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Coding sequence (CDS) from alignment at chr3:989491..991170+

>NO03G03320.1 ID=NO03G03320.1|Name=NO03G03320.1|organism=Nannochloropsis oceanica|type=CDS|length=1680bp|location=Sequence derived from alignment at chr3:989491..991170+ (Nannochloropsis oceanica)
ATGCGTGGCCTCCTCCCAGCCCTGCTGCCTGTTTGCCTCCTCTTCTTTAT
CCTACCCGCATCGTCAGCCTTCATCCGCATGCCTCTCCCCTCCTCTACCT
CCACGTCGCGTAGAAGACATGATTCTTTCCCGGGCTTAGCACAGACAGCA
CCCTCAGAGGACCAGCCACCACCGCCATTATCGAAATCAACACCACTACC
CCCGTCACCCTACCGATCCCACCGCACCAGTCGAGTTGCGCAAAACTGGA
GCACTCTGAGCCGGCGTAGAGCCATAGGTGTAGCTTCCGCATTAGTCCCT
GCCCTGCTGACGATTGCCGCACCAACACCAGGCAAGAAGGGAGTTGCACA
AGCAGCGCTTGAAGAGTTCCCATGGGTGACCAAAGGCGGGCTCCTTGACG
GAGTACTACCCGAATCAGTGCTCGTCGAGTCCCTTCCCTTAGATAATCAA
GCCATCAAGAGCATGGGGCAAGCACTTAGTAGGATCAATGAGTTGCGGGG
GTTGAACGTGCTGCAAGGAACCGGGTTCTGTAACGAGGCAGGTCAAGTCC
AGGCGGACCTCAGTTTCGTCGCACCCGAGTCACACGCAACAGGAGCCAAC
GGAACAACGGCATTTGATGCAATGGAAAGCGCCAACGGTGAAGACATATC
AACCTTTCGTTGGGCAAAAATCAAAGGACTGGCTGAAAATGTACGTGCAA
CGTACAACAGGGAAAAGGACGCTTTTCCTTATGCCTTAACCATCCGACCC
AACACTACCGCCGAGTCGCAATCCCGGCGCCGGGCACGGTTTGCTAACGA
GCTATTGTTGCTAGATGATGCAATTGCAAGCTTGGAGAATGCGACAAAAA
GGGAAAGTGTATCGGATACGTTGAGGTACCAAGAGGAGTCTTTGCTGCAT
CTTGGGCATTTAGGCGAGTTGATGGTGGCCAAATTTCCTTTCTCTCCGCC
CAAGAATGATGATCGTCGAGAAGACGATTATTTTAATTTGCCGCGGTTGT
TTGGGCGGGCGGAGGCGACGTTCTTTGTGAGGGAATTGCCGAAAGAAAAT
GGTGCGAAGGATGACGAGCTCCGAATGGGAAATATCACTATTGTCGTCGA
CGGGTTCAATGCGCCCATTTCGGCGGGTAACTTTATAGACTTATGCCAGC
GGGGATTTTATAACCGATTGCCGCTGGTGAAGGAGAAGGTTCGGAGTGCG
AGTAAGGAGGGAGGCGAGGTGGAGCTGGTGGTGGGGGGGAGGTACAAGAC
AGGGTTTATTGACCCCATTACGGGAAAACAACGCCGGGTGCCCTTGGAAG
TAATGCGTGCGGAGGCGGAGGGGAACAAACCTTTTTATGGGCAGGCAAGA
AATACTGGGATATTCACACGGGCGCCGCCTTTGTTGAGCTATCGGACCCC
ACGAGCGGTGGGCTTGCTACACCCAGAGCAGGACGGAAACGGCGCGAATA
GCGAATTTTTTTGGTTGAAAGATGACGCGCGGTGTGTGGATTCGGCGAAG
GGGCTTGACGGAAAATTTACATTGATTGGTTATGTGGTGGGGGGGGGCAG
GGAGGATGACCTGTTCCCGTATTTGAATGAGGGATTCCAGGTGGAGAGCG
TGCAGGTAGCGTGGGGGTATGATCATTTGGTCCGTTCCCGAGTAGGATTT
ATTGATATTTTGCTGCAGGGTGACGAGTAA
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Synonyms
Publications