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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| chr3 | genome | chr3:989114..993146 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO03G03310.2 vs.
Match: EWM29746.1 (uncharacterized protein Naga_100022g8 [Nannochloropsis gaditana]) HSP 1 Score: 353.6 bits (906), Expect = 3.900e-94 Identity = 167/191 (87.43%), Postives = 179/191 (93.72%), Query Frame = 0
Query: 1 MYSAIDTSKVRCLNESEFGACLHPFKPYSRRREAEPCLDSHDDDPELLLFVPFTRVVKLKSINIIGGHAGEGTAPTKIKLFMNRDDIDFSNCGELPAAQELELVANAASMGDGGGIDYPLKVSKFQNVDSLTIFFSENEGSDVTSVSYVGFKGEVTTARHGVVECVYESAPQAADHKQDAGEFLLPDVSGN 192
M++AIDTSKVRCLNE+E GACLHPFK Y++RRE EP LDSHDDDPELLLFVPFTR+VKLKSINIIGGHAGEGTAPTKIKLF+NRDDIDF NC EL AAQELELVANAA+MGDGGGIDYPLKVSKFQNV SLTIFFSEN G DVTSVSYVGFKGE+T+ RHGVVECVYESAPQAADHKQDAGE L+PDV+GN
Sbjct: 35 MFAAIDTSKVRCLNENEIGACLHPFKLYNKRREPEPRLDSHDDDPELLLFVPFTRIVKLKSINIIGGHAGEGTAPTKIKLFVNRDDIDFGNCNELMAAQELELVANAAAMGDGGGIDYPLKVSKFQNVSSLTIFFSENGGGDVTSVSYVGFKGEITSVRHGVVECVYESAPQAADHKQDAGEHLMPDVAGN 225
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO03G03310.2 ID=NO03G03310.2|Name=NO03G03310.2|organism=Nannochloropsis oceanica|type=mRNA|length=3903bp
CAAAAAGTGGCATGGGCCGTGAGTAGTGAGTGAGTTTGGCTATGGGCCAG
TAAGGCCGGTCTCCTTTGTCAAAATGCACGGTTCTGATTAAAGAGCGAGC
ATTTGCTGACATCCTTGCATGCATTCATAATTTAAGTACTTTCTTGGGGG
GGGCGCCGATCAAAAAAGCGAATCGCCTGCATTTCGTAAGTCGTTGTGAG
TCACACACACATCGTGACATCATCACATTAATAGCAGAACTCTGTTGAAA
AGCACAACATACTGCCTTCCTGTTTTGCTTCTCACACCCACAACACATCC
CCCTGCCCACCCCAGCATCGTTAAGGGTGCTAGATCACACTAGGAGAGCA
GGAGGAATGAGCTGCCGGGGTGAGCACATTGATTCCTGTGGGCACGGCCA
CGACCACGGTCACGGAGAAGAATGGTGAGCGAGCGCTGGAAGTATCATGA
CTTAGCGTCGAGAAGGACATAAGTGGTGGTAGAGTGCTTGTTTGCAGCGT
GCGGAGTAGGGATTTTGTGTATACTTGTTTCTATCAGTGGCATCGTGCGT
CTCTTTAGGGAAGAGCCGCGGTCAGCCTCCTCCTTTGCCTCCTCTCTCTC
CCCTTCACCAATCTTACACTCCTCATTCATTCGTTCCTGTAACACAGCGA
CCATGAGGCCGAGGACCCCGATGGGCAGTCCATGTATTCAGCTATTGATA
CGAGCAAGGTCCGCTGTTTAAACGAGAGTGAGTTCGGTGCGTGCCTGCAT
CCTTTCAAGCCCTACAGTCGACGCCGGGAGGCCGAACCCTGCCTAGACAG
CCACGACGACGACCCGGAGCTACTGCTCTTTGTGCCGTTTACCCGCGTTG
TCAAACTCAAGAGCATCAATATAATTGGGGGCCATGCAGGTGAGGGCACA
GCACCGACCAAGATCAAACTCTTCATGAATCGAGACGACATCGATTTCAG
CAACTGTGGGGAGCTACCTGCGGCACAAGAATTGGAGCTGGTAGCGAACG
CGGCCTCTATGGGAGATGGGGGTGGAATCGATTATCCTTTAAAAGTGAGC
AAGTTTCAGAATGTTGACAGCTTGACCATTTTCTTTAGTGAAAATGAGGG
GAGTGATGTGACGTCGGTGTCGTATGTGGGGTTTAAAGGCGAGGTGACGA
CGGCGCGGCATGGGGTGGTGGAATGTGTATACGAGTCGGCGCCTCAGGCG
GCGGATCACAAGCAGGATGCGGGGGAATTTTTATTGCCGGATGTGTCAGG
AAATTAAGATGATAAAAAACAGTAAAACGAGACGGCTGGAAGCGCAAAAA
AATGACATGTCGTACTTGTAGATACATCAAAATGGAGCTAAACGAAAAGA
AAGAGACGAAGAGGGTGCGGAGACAAAGAGAGTGTGCATGTATGAGTGTG
TGTGGATGAGCGGGTTTTACTCCACGCCTTATTTTCTCGAAGACTGGTTT
CAGTTTTTCGTTTCCTTTCATTAAATATATTTGGGTTTTGGTTTAGTCGT
GCCTAGGCTGGAAAGTGGCCGTCGATGGCGCAAGATATGGAGGGATGCAC
AGGAGGCTCTCTCATTAAAATGCTGCAGCCCTCATCGTTGTAACTTCCTT
GCTTGCTTCTGTACCGTGCCGATATAACATAGAATTATTTCGTTCACTAT
CGTAAACAAATGGTTTTCAATCAGGAGACCACCCCCAAAAGACACCTCTG
CTCCAACCCTGTGAGCAGAGCCCTCCTTCCTTACCTCTTGCTCCTCCCCT
TCCTCCTTTTCATCTCCACCAAATATATCAACACAAAGGCAATTTTTTTA
CCCAGCAAGCTACCTATCCCTTCCCTCCTTTACGTCCCTAGGGTCTTTAC
TCGTCACCCTGCAGCAAAATATCAATAAATCCTACTCGGGAACGGACCAA
ATGATCATACCCCCACGCTACCTGCACGCTCTCCACCTGGAATCCCTCAT
TCAAATACGGGAACAGGTCATCCTCCCTGCCCCCCCCCACCACATAACCA
ATCAATGTAAATTTTCCGTCAAGCCCCTTCGCCGAATCCACACACCGCGC
GTCATCTTTCAACCAAAAAAATTCGCTATTCGCGCCGTTTCCGTCCTGCT
CTGGGTGTAGCAAGCCCACCGCTCGTGGGGTCCGATAGCTCAACAAAGGC
GGCGCCCGTGTGAATATCCCAGTATTTCTTGCCTGCCCATAAAAAGGTTT
GTTCCCCTCCGCCTCCGCACGCATTACTTCCAAGGGCACCCGGCGTTGTT
TTCCCGTAATGGGGTCAATAAACCCTGTCTTGTACCTCCCCCCCACCACC
AGCTCCACCTCGCCTCCCTCCTTACTCGCACTCCGAACCTTCTCCTTCAC
CAGCGGCAATCGGTTATAAAATCCCCGCTGGCATAAGTCTATAAAGTTAC
CCGCCGAAATGGGCGCATTGAACCCGTCGACGACAATAGTGATATTTCCC
ATTCGGAGCTCGTCATCCTTCGCACCATTTTCTTTCGGCAATTCCCTCAC
AAAGAACGTCGCCTCCGCCCGCCCAAACAACCGCGGCAAATTAAAATAAT
CGTCTTCTCGACGATCATCATTCTTGGGCGGAGAGAAAGGAAATTTGGCC
ACCATCAACTCGCCTAAATGCCCAAGATGCAGCAAAGACTCCTCTTGGTA
CCTCAACGTATCCGATACACTTTCCCTTTTTGTCGCATTCTCCAAGCTTG
CAATTGCATCATCTAGCAACAATAGCTCGTTAGCAAACCGTGCCCGGCGC
CGGGATTGCGACTCGGCGGTAGTGTTGGGTCGGATGGTTAAGGCATAAGG
AAAAGCGTCCTTTTCCCTGTTGTACGTTGCACGTACATTTTCAGCCAGTC
CTTTGATTTTTGCCCAACGAAAGGTTGATATGTCTTCACCGTTGGCGCTT
TCCATTGCATCAAATGCCGTTGTTCCGTTGGCTCCTGTTGCGTGTGACTC
GGGTGCGACGAAACTGAGGTCCGCCTGGACTTGACCTGCCTCGTTACAGA
ACCCGGTTCCTTGCAGCACGTTCAACCCCCGCAACTCATTGATCCTACTA
AGTGCTTGCCCCATGCTCTTGATGGCTTGATTATCTAAGGGAAGGGACTC
GACGAGCACTGATTCGGGTAGTACTCCGTCAAGGAGCCCGCCTTTGGTCA
CCCATGGGAACTCTTCAAGCGCTGCTTGTGCAACTCCCTTCTTGCCTGGT
GTTGGTGCGGCAATCGTCAGCAGGGCAGGGACTAATGCGGAAGCTACACC
TATGGCTCTACGCCGGCTCAGAGTGCTCCAGTTTTGCGCAACTCGACTGG
TGCGGTGGGATCGGTAGGGTGACGGGGGTAGTGGTGTTGATTTCGATAAT
GGCGGTGGTGGCTGGTCCTCTGAGGGTGCTGTCTGTGCTAAGCCCGGGAA
AGAATCATGTCTTCTACGCGACGTGGAGGTAGAGGAGGGGAGAGGCATGC
GGATGAAGGCTGACGATGCGGGTAGGATAAAGAAGAGGAGGCAAACAGGC
AGCAGGGCTGGGAGGAGGCCACGCATGGCTGCTTGAAAAGAGCGCCGTGG
AATGTAATGGAGACGCTTCGCGAAATGCTACCCAGACTCCTGCTGTTGCT
ACTGGTTGTGCATTTAGAACTTCCCGCTGCCTCCTGTACACGTGGTGTGT
GTGGGTCGCCGTGCATTAGGTGTTGCGTGGGACCAGAGAAGTGCGCTTGC
TTCAATGAGCTGGGATACGACATGCTATTTTGATGACCCTACTTGTCGAC
CCATCTAAGTCAAAGAAAGGCAGCGAAGCAGGAGGCGAGCACAAGGAGGG
GAGACCGAACTAATGCTTCACAAGCTCATGCGGGACTGGCGGGCGTGGAT
GGATAAAGCTATGCATTTGACATACAAATGGGAGTACTTCTATCGCGAAT
CGC back to topprotein sequence of NO03G03310.2 >NO03G03310.2-protein ID=NO03G03310.2-protein|Name=NO03G03310.2|organism=Nannochloropsis oceanica|type=polypeptide|length=192bp
MYSAIDTSKVRCLNESEFGACLHPFKPYSRRREAEPCLDSHDDDPELLLF
VPFTRVVKLKSINIIGGHAGEGTAPTKIKLFMNRDDIDFSNCGELPAAQE
LELVANAASMGDGGGIDYPLKVSKFQNVDSLTIFFSENEGSDVTSVSYVG
FKGEVTTARHGVVECVYESAPQAADHKQDAGEFLLPDVSGN* back to topmRNA from alignment at chr3:989114..993146- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO03G03310.2 ID=NO03G03310.2|Name=NO03G03310.2|organism=Nannochloropsis oceanica|type=mRNA|length=4033bp|location=Sequence derived from alignment at chr3:989114..993146- (Nannochloropsis oceanica)
CAAAAAGTGGCATGGGCCGTGAGTAGTGAGTGAGTTTGGCTATGGGCCAG
TAAGGCCGGTCTCCTTTGTCAAAATGCACGGTTCTGATTAAAGAGCGAGC
ATTTGCTGACATCCTTGCATGCATTCATAATTTAAGTACTTTCTTGGGGG
GGGCGCCGATCAAAAAAGCGAATCGCCTGCATTTCGTAAGTCGTTGTGAG
TCACACACACATCGTGACATCATCACATTAATAGCAGAACTCTGTTGAAA
AGCACAACATACTGCCTTCCTGTTTTGCTTCTCACACCCACAACACATCC
CCCTGCCCACCCCAGCATCGTTAAGGGTGCTAGATCACACTAGGAGAGCA
GGAGGAATGAGCTGCCGGGGTGAGCACATTGATTCCTGTGGGCACGGCCA
CGACCACGGTCACGGAGAAGAATGGTGAGCGAGCGCTGGAAGTATCATGA
CTTAGCGTCGAGAAGGACATAAGTGGTGGTAGAGTGCTTGTTTGCAGCGT
GCGGAGTAGGGATTTTGTGTATACTTGTTTCTATCAGTGGCATCGTGCGT
CTCTTTAGGGAAGAGCCGCGGTCAGCCTCCTCCTTTGCCTCCTCTCTCTC
CCCTTCACCAATCTTACACTCCTCATTCATTCGTTCCTGTAACACAGCGA
CCATGAGGCCGAGGACCCCGATGGGCAGTCCATGTATTCAGCTATTGATA
CGAGCAAGGTCCGCTGTTTAAACGAGAGTGAGTTCGGTGCGTGCCTGCAT
CCTTTCAAGCCCTACAGTCGACGCCGGGAGGCCGAACCCTGCCTAGACAG
CCACGACGACGACCCGGAGCTACTGCTCTTTGTGCCGTTTACCCGCGTTG
TCAAACTCAAGAGCATCAATATAATTGGGGGCCATGCAGGTGAGGGCACA
GCACCGACCAAGATCAAACTGTAAGTAGGAAGGGTTGAGTTTTTTAATGC
GGACCTCTGATGTTGTAGCGCTTCTTCCTTTTCTCGTTCTCTCCCTACTT
CTCTTATTCCCATGCCATTCCTTTGTCTACCCCATTTTAACTCCTCTTAG
CTTCATGAATCGAGACGACATCGATTTCAGCAACTGTGGGGAGCTACCTG
CGGCACAAGAATTGGAGCTGGTAGCGAACGCGGCCTCTATGGGAGATGGG
GGTGGAATCGATTATCCTTTAAAAGTGAGCAAGTTTCAGAATGTTGACAG
CTTGACCATTTTCTTTAGTGAAAATGAGGGGAGTGATGTGACGTCGGTGT
CGTATGTGGGGTTTAAAGGCGAGGTGACGACGGCGCGGCATGGGGTGGTG
GAATGTGTATACGAGTCGGCGCCTCAGGCGGCGGATCACAAGCAGGATGC
GGGGGAATTTTTATTGCCGGATGTGTCAGGAAATTAAGATGATAAAAAAC
AGTAAAACGAGACGGCTGGAAGCGCAAAAAAATGACATGTCGTACTTGTA
GATACATCAAAATGGAGCTAAACGAAAAGAAAGAGACGAAGAGGGTGCGG
AGACAAAGAGAGTGTGCATGTATGAGTGTGTGTGGATGAGCGGGTTTTAC
TCCACGCCTTATTTTCTCGAAGACTGGTTTCAGTTTTTCGTTTCCTTTCA
TTAAATATATTTGGGTTTTGGTTTAGTCGTGCCTAGGCTGGAAAGTGGCC
GTCGATGGCGCAAGATATGGAGGGATGCACAGGAGGCTCTCTCATTAAAA
TGCTGCAGCCCTCATCGTTGTAACTTCCTTGCTTGCTTCTGTACCGTGCC
GATATAACATAGAATTATTTCGTTCACTATCGTAAACAAATGGTTTTCAA
TCAGGAGACCACCCCCAAAAGACACCTCTGCTCCAACCCTGTGAGCAGAG
CCCTCCTTCCTTACCTCTTGCTCCTCCCCTTCCTCCTTTTCATCTCCACC
AAATATATCAACACAAAGGCAATTTTTTTACCCAGCAAGCTACCTATCCC
TTCCCTCCTTTACGTCCCTAGGGTCTTTACTCGTCACCCTGCAGCAAAAT
ATCAATAAATCCTACTCGGGAACGGACCAAATGATCATACCCCCACGCTA
CCTGCACGCTCTCCACCTGGAATCCCTCATTCAAATACGGGAACAGGTCA
TCCTCCCTGCCCCCCCCCACCACATAACCAATCAATGTAAATTTTCCGTC
AAGCCCCTTCGCCGAATCCACACACCGCGCGTCATCTTTCAACCAAAAAA
ATTCGCTATTCGCGCCGTTTCCGTCCTGCTCTGGGTGTAGCAAGCCCACC
GCTCGTGGGGTCCGATAGCTCAACAAAGGCGGCGCCCGTGTGAATATCCC
AGTATTTCTTGCCTGCCCATAAAAAGGTTTGTTCCCCTCCGCCTCCGCAC
GCATTACTTCCAAGGGCACCCGGCGTTGTTTTCCCGTAATGGGGTCAATA
AACCCTGTCTTGTACCTCCCCCCCACCACCAGCTCCACCTCGCCTCCCTC
CTTACTCGCACTCCGAACCTTCTCCTTCACCAGCGGCAATCGGTTATAAA
ATCCCCGCTGGCATAAGTCTATAAAGTTACCCGCCGAAATGGGCGCATTG
AACCCGTCGACGACAATAGTGATATTTCCCATTCGGAGCTCGTCATCCTT
CGCACCATTTTCTTTCGGCAATTCCCTCACAAAGAACGTCGCCTCCGCCC
GCCCAAACAACCGCGGCAAATTAAAATAATCGTCTTCTCGACGATCATCA
TTCTTGGGCGGAGAGAAAGGAAATTTGGCCACCATCAACTCGCCTAAATG
CCCAAGATGCAGCAAAGACTCCTCTTGGTACCTCAACGTATCCGATACAC
TTTCCCTTTTTGTCGCATTCTCCAAGCTTGCAATTGCATCATCTAGCAAC
AATAGCTCGTTAGCAAACCGTGCCCGGCGCCGGGATTGCGACTCGGCGGT
AGTGTTGGGTCGGATGGTTAAGGCATAAGGAAAAGCGTCCTTTTCCCTGT
TGTACGTTGCACGTACATTTTCAGCCAGTCCTTTGATTTTTGCCCAACGA
AAGGTTGATATGTCTTCACCGTTGGCGCTTTCCATTGCATCAAATGCCGT
TGTTCCGTTGGCTCCTGTTGCGTGTGACTCGGGTGCGACGAAACTGAGGT
CCGCCTGGACTTGACCTGCCTCGTTACAGAACCCGGTTCCTTGCAGCACG
TTCAACCCCCGCAACTCATTGATCCTACTAAGTGCTTGCCCCATGCTCTT
GATGGCTTGATTATCTAAGGGAAGGGACTCGACGAGCACTGATTCGGGTA
GTACTCCGTCAAGGAGCCCGCCTTTGGTCACCCATGGGAACTCTTCAAGC
GCTGCTTGTGCAACTCCCTTCTTGCCTGGTGTTGGTGCGGCAATCGTCAG
CAGGGCAGGGACTAATGCGGAAGCTACACCTATGGCTCTACGCCGGCTCA
GAGTGCTCCAGTTTTGCGCAACTCGACTGGTGCGGTGGGATCGGTAGGGT
GACGGGGGTAGTGGTGTTGATTTCGATAATGGCGGTGGTGGCTGGTCCTC
TGAGGGTGCTGTCTGTGCTAAGCCCGGGAAAGAATCATGTCTTCTACGCG
ACGTGGAGGTAGAGGAGGGGAGAGGCATGCGGATGAAGGCTGACGATGCG
GGTAGGATAAAGAAGAGGAGGCAAACAGGCAGCAGGGCTGGGAGGAGGCC
ACGCATGGCTGCTTGAAAAGAGCGCCGTGGAATGTAATGGAGACGCTTCG
CGAAATGCTACCCAGACTCCTGCTGTTGCTACTGGTTGTGCATTTAGAAC
TTCCCGCTGCCTCCTGTACACGTGGTGTGTGTGGGTCGCCGTGCATTAGG
TGTTGCGTGGGACCAGAGAAGTGCGCTTGCTTCAATGAGCTGGGATACGA
CATGCTATTTTGATGACCCTACTTGTCGACCCATCTAAGTCAAAGAAAGG
CAGCGAAGCAGGAGGCGAGCACAAGGAGGGGAGACCGAACTAATGCTTCA
CAAGCTCATGCGGGACTGGCGGGCGTGGATGGATAAAGCTATGCATTTGA
CATACAAATGGGAGTACTTCTATCGCGAATCGC back to topCoding sequence (CDS) from alignment at chr3:989114..993146- >NO03G03310.2 ID=NO03G03310.2|Name=NO03G03310.2|organism=Nannochloropsis oceanica|type=CDS|length=576bp|location=Sequence derived from alignment at chr3:989114..993146- (Nannochloropsis oceanica)
ATGTATTCAGCTATTGATACGAGCAAGGTCCGCTGTTTAAACGAGAGTGA
GTTCGGTGCGTGCCTGCATCCTTTCAAGCCCTACAGTCGACGCCGGGAGG
CCGAACCCTGCCTAGACAGCCACGACGACGACCCGGAGCTACTGCTCTTT
GTGCCGTTTACCCGCGTTGTCAAACTCAAGAGCATCAATATAATTGGGGG
CCATGCAGGTGAGGGCACAGCACCGACCAAGATCAAACTCTTCATGAATC
GAGACGACATCGATTTCAGCAACTGTGGGGAGCTACCTGCGGCACAAGAA
TTGGAGCTGGTAGCGAACGCGGCCTCTATGGGAGATGGGGGTGGAATCGA
TTATCCTTTAAAAGTGAGCAAGTTTCAGAATGTTGACAGCTTGACCATTT
TCTTTAGTGAAAATGAGGGGAGTGATGTGACGTCGGTGTCGTATGTGGGG
TTTAAAGGCGAGGTGACGACGGCGCGGCATGGGGTGGTGGAATGTGTATA
CGAGTCGGCGCCTCAGGCGGCGGATCACAAGCAGGATGCGGGGGAATTTT
TATTGCCGGATGTGTCAGGAAATTAA back to top
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