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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr3 | genome | chr3:972985..976009 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO03G03270.1 vs.
Match: EWM29738.1 (kelch-like protein 17 [Nannochloropsis gaditana]) HSP 1 Score: 898.3 bits (2320), Expect = 1.300e-257 Identity = 433/576 (75.17%), Postives = 493/576 (85.59%), Query Frame = 0
Query: 1 MFQLMRRLRDNGALCDVIVRGDKVEVKAHRLVLAAASEYFRACLTGPMQESSDKVIALSGIDDEALGELINFAYCGRVSLTEETVLELLVAANRLQMPQVVTQCCDFLLQRMDCGNCLTILGIANTYHCSHMRTKAEAYIHRHFESVYLGEEFLAMSLEQLVQLLASDAVSVSSEEIIFRAAVRWMTHAFETRRAHILPLLRTVRLQLVPTSFIADVIHQHDLVQQCPEAQNLLLQAYRWHNSARSDARRQAFHFVRQQAIRRVIYAIGGDDGHDDRNPYCTVMSLDMQMGMWRSVAPLQQKRSVCGAAALGGKIYVVGGYNGERAVETVEEFDPSTNSWRNVASLSQRRCSCGCAVLDGLLYVVGGVCGPLALSEVERYDPVVDEWTRISPMQDGRSGCGVAELGGLIYAVGGISGNGETVCTAECFDPKTQRWQSVQNMHEARRSFGLAAIGGLLYACGGNDGVNDLNSLEVYNPRTNRWKPSGPMRYARMYCSVAVLDGKLYAVGGLDGTTTLDVVEMYDPERGAWCEVLPRLDRSVCGCGLAVMDCVVRPLIGQGKEGEEAKGGRRVKEGIS 577
M Q M LRD GALCDV+VRGDK+ +KAHR+VLAAASEYFRACL GPMQESSDKVI LSG+DD AL EL+++AYCGRV L E+TVLE+LVAANRLQ+PQVV QCCDFL++RMD NCLTILGIAN +HC+HMR KAEAY+HRHFESVYLGEEFL M L++LVQLL++D+VSV+SEE IF AAVRW++ +TRR H+L LLRTVRLQLVPT FIADVIHQHDLVQ CPEA+ LLLQAY WHNSA D R QA+ +VR +AIR VIY IGGDDGHDDRNPY V+SL+ + WR V+PLQQKRSVCGAA L GK+YVVGGY+GERAVETVEEFDP+TN+WR VA+LSQRRCSCGCAV+DGLLY VGGVCGPLAL+EVERYDPV D+WT + MQDGRSGCGVAELGGL+YAVGGI+ NG+TVCTAECFDP TQRWQSVQ+MHE RRSFGLAA+GGLLYACGGNDGVNDLN+LEVYNP TNRWK PMR+ARMYCSV VLD KLYAVGGLDGTT+L+VVE++DP RG W E+LP+LD VCGCGLAVMDCV KE ++ GG + +S
Sbjct: 160 MLQTMNSLRDQGALCDVVVRGDKLAIKAHRVVLAAASEYFRACLLGPMQESSDKVIHLSGMDDGALKELVSYAYCGRVRLAEDTVLEILVAANRLQVPQVVEQCCDFLIRRMDSSNCLTILGIANMFHCAHMRIKAEAYLHRHFESVYLGEEFLQMPLDKLVQLLSNDSVSVTSEETIFNAAVRWISADADTRRGHMLALLRTVRLQLVPTFFIADVIHQHDLVQCCPEAERLLLQAYHWHNSALQDLREQAYRYVRGRAIRPVIYVIGGDDGHDDRNPYSDVISLNTHLSAWRKVSPLQQKRSVCGAATLRGKMYVVGGYDGERAVETVEEFDPTTNTWRYVANLSQRRCSCGCAVIDGLLYAVGGVCGPLALNEVERYDPVTDQWTLVPAMQDGRSGCGVAELGGLLYAVGGINCNGDTVCTAECFDPSTQRWQSVQSMHETRRSFGLAALGGLLYACGGNDGVNDLNTLEVYNPLTNRWKVLVPMRHARMYCSVVVLDEKLYAVGGLDGTTSLNVVEVFDPSRGVWEEILPKLDHHVCGCGLAVMDCVAPEKELDVKEKIKSIGGYADQNNLS 735
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO03G03270.1 ID=NO03G03270.1|Name=NO03G03270.1|organism=Nannochloropsis oceanica|type=mRNA|length=2921bp ACAGATCTCTCCCACCATCTCTTCATCCTGCGGGTGCCGTGGTCAGGCGT AACAAGGCACCCCCAAGGCGTGAATCGAAGGCACATACACTTACCGCGCG GCCGTCCAGTGCATTTTGACTTTTAAAAGACGATTGTATCCACATTCACG CGCGTGCAAAACCATGAGCCGCATCGGCGGTCACCAAGGCGAGGGTGGTG CAAGCAGCGGTGAAGGTAGTTGCGGCCGCGGAGGTGGCCGAGTAACCATC ACGACGGAGCCCCCCACGATTGATTCCTCTGTCCGCTTGGAGGACGGAGA ACAAGGAAACGACGACATGATTTCCTCGCCCTTGCCTCGAGGTTTGGCAT CCCCCACCAGCGCGGCCGAAGCTACAGCAGCAGAAGCAGTAGATGTGCTG TCTTATAACTCAAGCCTGTGTCGGAAACGAAGGCGGGCGGCAGGCCGCAA TGACAAGACTCTGCTCGACGACGGTGGCGGGGGGGGGGGAGTGAGGACGG AGCCAATGCCTCGTCTTCCTCCCCCTTGTCCTCCTCCTCTTACTTGTCCC GAAGCCGCTCCCTACCCGTGTTGGTGGCGACACGACAGCACCACTATCAC CATCAGCAGAAACAATTATTATTGCAGCCAACACCGACATACTTGCCGGC CACGGGGGAGTATGCGTCTGAGATGTTTCAATTAATGCGACGCTTGCGAG ACAATGGAGCATTGTGCGATGTGATCGTGCGTGGAGATAAAGTGGAAGTA AAGGCACATCGCTTAGTATTGGCGGCGGCGAGTGAGTATTTCCGGGCTTG TTTGACGGGACCGATGCAGGAGAGCTCGGATAAAGTGATCGCGCTTTCGG GGATAGATGATGAGGCCTTGGGTGAGTTGATTAATTTCGCCTATTGTGGC CGGGTGTCCCTGACGGAGGAGACAGTGTTGGAGCTGCTGGTGGCTGCCAA CAGGCTACAGATGCCGCAGGTGGTTACACAATGTTGTGATTTTCTGTTGC AGCGGATGGACTGTGGGAACTGTTTGACGATTTTGGGGATCGCGAATACG TATCATTGTTCGCATATGCGGACGAAGGCCGAGGCTTACATCCACCGGCA CTTTGAATCGGTATATTTGGGCGAGGAATTTTTAGCCATGTCGCTTGAGC AACTTGTTCAGCTTTTGGCCAGTGACGCAGTGAGTGTATCGTCGGAAGAG ATTATTTTTCGGGCGGCAGTCCGGTGGATGACCCATGCCTTTGAAACACG CCGCGCCCACATCCTGCCCCTCCTCCGAACCGTCCGCCTGCAGCTCGTCC CTACCTCCTTTATTGCCGATGTCATCCACCAACATGACCTCGTCCAACAG TGCCCGGAAGCTCAAAATCTCCTCCTGCAAGCGTATAGATGGCATAATTC TGCCCGTTCAGACGCACGAAGGCAAGCGTTTCATTTTGTTCGACAACAGG CGATCCGTCGGGTGATTTATGCGATTGGTGGCGATGACGGACACGACGAC CGCAACCCCTACTGCACCGTCATGAGTTTGGACATGCAGATGGGGATGTG GCGTAGCGTGGCACCGCTGCAGCAAAAGCGGTCGGTGTGTGGAGCGGCGG CGTTGGGGGGTAAGATTTATGTGGTGGGGGGTTACAATGGCGAGAGAGCT GTAGAGACTGTCGAGGAGTTCGATCCAAGCACAAATAGCTGGAGGAATGT CGCTAGTCTGAGTCAGAGACGCTGTTCGTGTGGTTGTGCTGTGTTGGATG GGCTGCTTTATGTGGTGGGAGGGGTATGTGGGCCACTGGCTTTGAGTGAG GTGGAGAGGTATGACCCTGTGGTGGATGAATGGACAAGGATCTCCCCGAT GCAAGATGGCAGGTCGGGGTGTGGGGTGGCGGAGTTGGGAGGGCTGATAT ACGCTGTGGGGGGGATAAGTGGGAATGGGGAGACCGTTTGTACGGCGGAA TGTTTTGATCCCAAGACGCAACGGTGGCAGAGTGTGCAAAACATGCATGA GGCGAGGAGGAGTTTTGGGTTGGCGGCGATAGGGGGCTTGTTGTACGCAT GTGGGGGGAATGATGGAGTGAATGATCTGAATTCGTTGGAGGTGTACAAT CCGAGAACAAATCGATGGAAGCCCTCAGGGCCGATGAGGTATGCAAGGAT GTATTGCTCCGTGGCGGTTTTGGATGGGAAACTTTACGCCGTAGGAGGGC TAGATGGCACGACCACCCTGGATGTGGTGGAGATGTATGACCCGGAAAGG GGCGCGTGGTGCGAGGTGCTGCCCAGGCTGGATCGTTCTGTGTGTGGGTG TGGGTTGGCTGTGATGGATTGTGTAGTGCGACCACTTATAGGGCAAGGGA AGGAGGGGGAGGAGGCGAAGGGGGGAAGGAGGGTGAAGGAGGGGATTTCG GACAGGAGGAGAAGAGTGAGGGAGGAGGGGGGGGGGAGGAAGAGGCGGGG GGGGGAGGAGGAGAAGGATGAGGAAGGGGAGGGTGAAGGAGAATAAGATG GAGGACGACGAGGACGACGAGAAGTGAGGACAAATGTGGCTGAGGCGATG GGTAGGAGGGGGGTGGCGGGGATGGAGCGGGGAATGCTTAAATTATCTGT TGTGATTTTTGTACAGAGATAGGATTTTCATTGTTATGTAGTCTCAACAC GTGCGGGCAGATGGTGTGTGTGCTTGTGACATGCCATACACGAATGGTCG CACGAGGCGAAATAGGGAGTGAGTGTACATATGACAAAGGGAAGGAGGAG CGCGAGAACGGATAAGAGAAAAATTGTGTGTGAAGAGTCAGAAAAGCAAG CCAGAGCGCCAGTGAAAGTTTTGCGATCAAGTCGTTGTGACTTCGTTGTC ATATTTTGCTTGAATATGGCAGAGATAGAAACAAAAACACCAGAAGAAAA ATACATGAATGCATACGCGAC back to topprotein sequence of NO03G03270.1 >NO03G03270.1-protein ID=NO03G03270.1-protein|Name=NO03G03270.1|organism=Nannochloropsis oceanica|type=polypeptide|length=608bp MFQLMRRLRDNGALCDVIVRGDKVEVKAHRLVLAAASEYFRACLTGPMQE SSDKVIALSGIDDEALGELINFAYCGRVSLTEETVLELLVAANRLQMPQV VTQCCDFLLQRMDCGNCLTILGIANTYHCSHMRTKAEAYIHRHFESVYLG EEFLAMSLEQLVQLLASDAVSVSSEEIIFRAAVRWMTHAFETRRAHILPL LRTVRLQLVPTSFIADVIHQHDLVQQCPEAQNLLLQAYRWHNSARSDARR QAFHFVRQQAIRRVIYAIGGDDGHDDRNPYCTVMSLDMQMGMWRSVAPLQ QKRSVCGAAALGGKIYVVGGYNGERAVETVEEFDPSTNSWRNVASLSQRR CSCGCAVLDGLLYVVGGVCGPLALSEVERYDPVVDEWTRISPMQDGRSGC GVAELGGLIYAVGGISGNGETVCTAECFDPKTQRWQSVQNMHEARRSFGL AAIGGLLYACGGNDGVNDLNSLEVYNPRTNRWKPSGPMRYARMYCSVAVL DGKLYAVGGLDGTTTLDVVEMYDPERGAWCEVLPRLDRSVCGCGLAVMDC VVRPLIGQGKEGEEAKGGRRVKEGISDRRRRVREEGGGRKRRGGEEEKDE EGEGEGE* back to topmRNA from alignment at chr3:972985..976009+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO03G03270.1 ID=NO03G03270.1|Name=NO03G03270.1|organism=Nannochloropsis oceanica|type=mRNA|length=3025bp|location=Sequence derived from alignment at chr3:972985..976009+ (Nannochloropsis oceanica) ACAGATCTCTCCCACCATCTCTTCATCCTGCGGGTGCCGTGGTCAGGCGT
AACAAGGCACCCCCAAGGCGTGAATCGAAGGCACATACACTTACCGCGCG
GCCGTCCAGTGCATTTTGACTTTTAAAAGACGATTGTATCCACATTCACG
CGCGTGCAAAACCATGAGCCGCATCGGCGGTCACCAAGGCGAGGGTGGTG
CAAGCAGCGGTGAAGGTAGTTGCGGCCGCGGAGGTGGCCGAGTAACCATC
ACGACGGAGCCCCCCACGATTGATGTGAGTCTTTTGATGCTGTCCCACCA
AACATAATTGCACCTCTGCAACCCACTAATATGCGTCTTTCTCTTCCCTC
TCTCGCACAATTTTGAACGCACCTACAGTCCTCTGTCCGCTTGGAGGACG
GAGAACAAGGAAACGACGACATGATTTCCTCGCCCTTGCCTCGAGGTTTG
GCATCCCCCACCAGCGCGGCCGAAGCTACAGCAGCAGAAGCAGTAGATGT
GCTGTCTTATAACTCAAGCCTGTGTCGGAAACGAAGGCGGGCGGCAGGCC
GCAATGACAAGACTCTGCTCGACGACGGTGGCGGGGGGGGGGGAGTGAGG
ACGGAGCCAATGCCTCGTCTTCCTCCCCCTTGTCCTCCTCCTCTTACTTG
TCCCGAAGCCGCTCCCTACCCGTGTTGGTGGCGACACGACAGCACCACTA
TCACCATCAGCAGAAACAATTATTATTGCAGCCAACACCGACATACTTGC
CGGCCACGGGGGAGTATGCGTCTGAGATGTTTCAATTAATGCGACGCTTG
CGAGACAATGGAGCATTGTGCGATGTGATCGTGCGTGGAGATAAAGTGGA
AGTAAAGGCACATCGCTTAGTATTGGCGGCGGCGAGTGAGTATTTCCGGG
CTTGTTTGACGGGACCGATGCAGGAGAGCTCGGATAAAGTGATCGCGCTT
TCGGGGATAGATGATGAGGCCTTGGGTGAGTTGATTAATTTCGCCTATTG
TGGCCGGGTGTCCCTGACGGAGGAGACAGTGTTGGAGCTGCTGGTGGCTG
CCAACAGGCTACAGATGCCGCAGGTGGTTACACAATGTTGTGATTTTCTG
TTGCAGCGGATGGACTGTGGGAACTGTTTGACGATTTTGGGGATCGCGAA
TACGTATCATTGTTCGCATATGCGGACGAAGGCCGAGGCTTACATCCACC
GGCACTTTGAATCGGTATATTTGGGCGAGGAATTTTTAGCCATGTCGCTT
GAGCAACTTGTTCAGCTTTTGGCCAGTGACGCAGTGAGTGTATCGTCGGA
AGAGATTATTTTTCGGGCGGCAGTCCGGTGGATGACCCATGCCTTTGAAA
CACGCCGCGCCCACATCCTGCCCCTCCTCCGAACCGTCCGCCTGCAGCTC
GTCCCTACCTCCTTTATTGCCGATGTCATCCACCAACATGACCTCGTCCA
ACAGTGCCCGGAAGCTCAAAATCTCCTCCTGCAAGCGTATAGATGGCATA
ATTCTGCCCGTTCAGACGCACGAAGGCAAGCGTTTCATTTTGTTCGACAA
CAGGCGATCCGTCGGGTGATTTATGCGATTGGTGGCGATGACGGACACGA
CGACCGCAACCCCTACTGCACCGTCATGAGTTTGGACATGCAGATGGGGA
TGTGGCGTAGCGTGGCACCGCTGCAGCAAAAGCGGTCGGTGTGTGGAGCG
GCGGCGTTGGGGGGTAAGATTTATGTGGTGGGGGGTTACAATGGCGAGAG
AGCTGTAGAGACTGTCGAGGAGTTCGATCCAAGCACAAATAGCTGGAGGA
ATGTCGCTAGTCTGAGTCAGAGACGCTGTTCGTGTGGTTGTGCTGTGTTG
GATGGGCTGCTTTATGTGGTGGGAGGGGTATGTGGGCCACTGGCTTTGAG
TGAGGTGGAGAGGTATGACCCTGTGGTGGATGAATGGACAAGGATCTCCC
CGATGCAAGATGGCAGGTCGGGGTGTGGGGTGGCGGAGTTGGGAGGGCTG
ATATACGCTGTGGGGGGGATAAGTGGGAATGGGGAGACCGTTTGTACGGC
GGAATGTTTTGATCCCAAGACGCAACGGTGGCAGAGTGTGCAAAACATGC
ATGAGGCGAGGAGGAGTTTTGGGTTGGCGGCGATAGGGGGCTTGTTGTAC
GCATGTGGGGGGAATGATGGAGTGAATGATCTGAATTCGTTGGAGGTGTA
CAATCCGAGAACAAATCGATGGAAGCCCTCAGGGCCGATGAGGTATGCAA
GGATGTATTGCTCCGTGGCGGTTTTGGATGGGAAACTTTACGCCGTAGGA
GGGCTAGATGGCACGACCACCCTGGATGTGGTGGAGATGTATGACCCGGA
AAGGGGCGCGTGGTGCGAGGTGCTGCCCAGGCTGGATCGTTCTGTGTGTG
GGTGTGGGTTGGCTGTGATGGATTGTGTAGTGCGACCACTTATAGGGCAA
GGGAAGGAGGGGGAGGAGGCGAAGGGGGGAAGGAGGGTGAAGGAGGGGAT
TTCGGACAGGAGGAGAAGAGTGAGGGAGGAGGGGGGGGGGAGGAAGAGGC
GGGGGGGGGAGGAGGAGAAGGATGAGGAAGGGGAGGGTGAAGGAGAATAA
GATGGAGGACGACGAGGACGACGAGAAGTGAGGACAAATGTGGCTGAGGC
GATGGGTAGGAGGGGGGTGGCGGGGATGGAGCGGGGAATGCTTAAATTAT
CTGTTGTGATTTTTGTACAGAGATAGGATTTTCATTGTTATGTAGTCTCA
ACACGTGCGGGCAGATGGTGTGTGTGCTTGTGACATGCCATACACGAATG
GTCGCACGAGGCGAAATAGGGAGTGAGTGTACATATGACAAAGGGAAGGA
GGAGCGCGAGAACGGATAAGAGAAAAATTGTGTGTGAAGAGTCAGAAAAG
CAAGCCAGAGCGCCAGTGAAAGTTTTGCGATCAAGTCGTTGTGACTTCGT
TGTCATATTTTGCTTGAATATGGCAGAGATAGAAACAAAAACACCAGAAG
AAAAATACATGAATGCATACGCGAC back to topCoding sequence (CDS) from alignment at chr3:972985..976009+ >NO03G03270.1 ID=NO03G03270.1|Name=NO03G03270.1|organism=Nannochloropsis oceanica|type=CDS|length=1824bp|location=Sequence derived from alignment at chr3:972985..976009+ (Nannochloropsis oceanica) ATGTTTCAATTAATGCGACGCTTGCGAGACAATGGAGCATTGTGCGATGT GATCGTGCGTGGAGATAAAGTGGAAGTAAAGGCACATCGCTTAGTATTGG CGGCGGCGAGTGAGTATTTCCGGGCTTGTTTGACGGGACCGATGCAGGAG AGCTCGGATAAAGTGATCGCGCTTTCGGGGATAGATGATGAGGCCTTGGG TGAGTTGATTAATTTCGCCTATTGTGGCCGGGTGTCCCTGACGGAGGAGA CAGTGTTGGAGCTGCTGGTGGCTGCCAACAGGCTACAGATGCCGCAGGTG GTTACACAATGTTGTGATTTTCTGTTGCAGCGGATGGACTGTGGGAACTG TTTGACGATTTTGGGGATCGCGAATACGTATCATTGTTCGCATATGCGGA CGAAGGCCGAGGCTTACATCCACCGGCACTTTGAATCGGTATATTTGGGC GAGGAATTTTTAGCCATGTCGCTTGAGCAACTTGTTCAGCTTTTGGCCAG TGACGCAGTGAGTGTATCGTCGGAAGAGATTATTTTTCGGGCGGCAGTCC GGTGGATGACCCATGCCTTTGAAACACGCCGCGCCCACATCCTGCCCCTC CTCCGAACCGTCCGCCTGCAGCTCGTCCCTACCTCCTTTATTGCCGATGT CATCCACCAACATGACCTCGTCCAACAGTGCCCGGAAGCTCAAAATCTCC TCCTGCAAGCGTATAGATGGCATAATTCTGCCCGTTCAGACGCACGAAGG CAAGCGTTTCATTTTGTTCGACAACAGGCGATCCGTCGGGTGATTTATGC GATTGGTGGCGATGACGGACACGACGACCGCAACCCCTACTGCACCGTCA TGAGTTTGGACATGCAGATGGGGATGTGGCGTAGCGTGGCACCGCTGCAG CAAAAGCGGTCGGTGTGTGGAGCGGCGGCGTTGGGGGGTAAGATTTATGT GGTGGGGGGTTACAATGGCGAGAGAGCTGTAGAGACTGTCGAGGAGTTCG ATCCAAGCACAAATAGCTGGAGGAATGTCGCTAGTCTGAGTCAGAGACGC TGTTCGTGTGGTTGTGCTGTGTTGGATGGGCTGCTTTATGTGGTGGGAGG GGTATGTGGGCCACTGGCTTTGAGTGAGGTGGAGAGGTATGACCCTGTGG TGGATGAATGGACAAGGATCTCCCCGATGCAAGATGGCAGGTCGGGGTGT GGGGTGGCGGAGTTGGGAGGGCTGATATACGCTGTGGGGGGGATAAGTGG GAATGGGGAGACCGTTTGTACGGCGGAATGTTTTGATCCCAAGACGCAAC GGTGGCAGAGTGTGCAAAACATGCATGAGGCGAGGAGGAGTTTTGGGTTG GCGGCGATAGGGGGCTTGTTGTACGCATGTGGGGGGAATGATGGAGTGAA TGATCTGAATTCGTTGGAGGTGTACAATCCGAGAACAAATCGATGGAAGC CCTCAGGGCCGATGAGGTATGCAAGGATGTATTGCTCCGTGGCGGTTTTG GATGGGAAACTTTACGCCGTAGGAGGGCTAGATGGCACGACCACCCTGGA TGTGGTGGAGATGTATGACCCGGAAAGGGGCGCGTGGTGCGAGGTGCTGC CCAGGCTGGATCGTTCTGTGTGTGGGTGTGGGTTGGCTGTGATGGATTGT GTAGTGCGACCACTTATAGGGCAAGGGAAGGAGGGGGAGGAGGCGAAGGG GGGAAGGAGGGTGAAGGAGGGGATTTCGGACAGGAGGAGAAGAGTGAGGG AGGAGGGGGGGGGGAGGAAGAGGCGGGGGGGGGAGGAGGAGAAGGATGAG GAAGGGGAGGGTGAAGGAGAATAA back to top
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