NO03G03230.1, NO03G03230.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO03G03230.1
Unique NameNO03G03230.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1155
Alignment locationchr3:958719..960114 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:958719..960114 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO03G03230.1 vs.
Match: EWM29749.1 (mitochondrial carrier family [Nannochloropsis gaditana])

HSP 1 Score: 461.5 bits (1186), Expect = 2.600e-126
Identity = 248/403 (61.54%), Postives = 305/403 (75.68%), Query Frame = 0
Query:    6 PSAFAEATGGAIGALWTTLLFHPLDVAKLRLQAEADAEEDEKGLGGREEDEEGKTDERLPVVMEQGTSTSASSSSASSSYTPPGDGAM----KKGPKTFLGEALVVLKQPDLWYAGLGLKLQLSILSTFVYFYVYSSLKRSFARVFKRPVTFLPNLLLASLAGVVNILITMPLDTIVTRLQVAPRGQRPSFQEMVRLLWEEQQQQRQPASQKQ------------ALLQITRRLSRFWHGLLPALLLTSNPAINYAAYDAMKALIPLPSQRKYHNVKETFLIGILSKFLATILTYPLIRAKVMMMSEGKG--------GIKGGKDEEPEVSLMTLSPSFMLAQERKGLGSILRQLVKQGGLRELYVGLDGQIINTALKNATLLNTKDRVSRITSYIMRHFASF 385
            PSAFAEA GGAIGALWTTLLF+PLDVAKLRLQAEAD+EE            EG+ DE   V  E+G +   ++     +       A+    KKGP+TFLGE LVVLKQP+LWYAGLGLKLQLS+LSTF+YFYVY++LKR F R FKRPVTFLPNL LAS+AGVVN+L+TMPLDT+VTRLQVAP G+RPS  EM+RL+WEE    R+P  +               ++ + RRL+RFWHG LPALLLTSNPAINYAAYDAMK L+PLP  R++HNV+ETFLIG+LSKFLAT++TYPLIRAKV+MMS+ K         G+    +E+ E   + LSP  +LAQER+GL SIL+QL+++GG+RELYVGLDGQ++NTALKNATLLNTKDR+SR+TS+++R F ++
Sbjct:    8 PSAFAEAMGGAIGALWTTLLFYPLDVAKLRLQAEADSEE------------EGRKDEEYDVGREKGCTPKVNTDICEDASRLDAPDALTTVQKKGPRTFLGEVLVVLKQPELWYAGLGLKLQLSVLSTFIYFYVYTALKRVFTRAFKRPVTFLPNLALASMAGVVNVLLTMPLDTLVTRLQVAPAGRRPSLGEMLRLVWEEDGPDREPVVKPSGHEAGAYGVGMGGVMPVLRRLARFWHGCLPALLLTSNPAINYAAYDAMKTLVPLPQGRRHHNVRETFLIGMLSKFLATLITYPLIRAKVIMMSDTKRAHYLETHFGVNDHSEEDAESIPLGLSPRLLLAQERQGLCSILKQLIREGGVRELYVGLDGQVLNTALKNATLLNTKDRISRVTSFLLRRFFAY 398          
The following BLAST results are available for this feature:
BLAST of NO03G03230.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29749.12.600e-12661.54mitochondrial carrier family [Nannochloropsis gadi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO03G03230NO03G03230Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO03G03230.1NO03G03230.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO03G03230.1.cds1NO03G03230.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO03G03230.1.cds2NO03G03230.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO03G03230.1 ID=NO03G03230.1|Name=NO03G03230.1|organism=Nannochloropsis oceanica|type=mRNA|length=1155bp
ATGGTGCGCGTTCCTCCCTCTGCCTTTGCCGAGGCCACGGGCGGCGCCAT
TGGTGCGCTATGGACAACGCTGCTGTTTCATCCCCTAGATGTCGCCAAGC
TCCGCCTCCAAGCAGAGGCCGACGCAGAGGAGGATGAGAAAGGGTTGGGG
GGTAGGGAAGAGGACGAGGAGGGCAAGACGGACGAGCGATTGCCCGTGGT
GATGGAGCAAGGCACCAGCACCAGTGCGAGTAGCAGCAGTGCTTCCTCGA
GTTACACGCCTCCTGGTGATGGTGCAATGAAGAAGGGGCCCAAGACCTTT
TTGGGAGAGGCATTGGTGGTGCTCAAGCAACCCGACTTGTGGTACGCGGG
ACTAGGCTTGAAACTTCAACTATCCATCCTTTCCACCTTCGTTTACTTCT
ACGTCTACAGTTCCCTTAAACGCAGCTTCGCACGCGTATTCAAGCGTCCC
GTCACCTTCCTCCCCAATCTTCTCCTTGCCTCTCTGGCTGGAGTGGTGAA
CATTTTAATCACCATGCCACTGGACACAATAGTCACTCGCCTCCAAGTCG
CTCCTCGAGGGCAACGTCCCTCTTTCCAAGAAATGGTGCGTTTATTATGG
GAGGAGCAGCAGCAACAACGGCAGCCGGCTTCGCAAAAGCAAGCCTTGCT
TCAAATTACTCGTCGACTCTCCCGCTTCTGGCACGGCCTCCTTCCTGCCC
TCCTCCTTACATCCAATCCGGCCATTAATTACGCTGCCTACGATGCAATG
AAGGCGCTAATTCCCCTCCCTTCTCAACGGAAATACCACAACGTCAAAGA
AACGTTTTTAATCGGAATTCTCTCTAAATTCCTTGCCACGATACTTACAT
ATCCTCTCATCCGGGCAAAAGTCATGATGATGTCTGAGGGGAAAGGTGGT
ATAAAGGGAGGCAAAGATGAAGAGCCTGAAGTCAGCTTGATGACGTTGTC
CCCTAGCTTTATGCTGGCGCAGGAGAGGAAGGGTTTAGGAAGTATTTTGA
GACAGTTGGTGAAGCAGGGAGGGTTGCGGGAGCTCTATGTGGGCTTAGAT
GGGCAAATTATAAATACGGCATTGAAGAATGCGACACTGTTGAATACGAA
GGATAGGGTTAGTCGGATCACGAGCTATATCATGCGGCATTTCGCGTCGT
TCTAG
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protein sequence of NO03G03230.1

>NO03G03230.1-protein ID=NO03G03230.1-protein|Name=NO03G03230.1|organism=Nannochloropsis oceanica|type=polypeptide|length=385bp
MVRVPPSAFAEATGGAIGALWTTLLFHPLDVAKLRLQAEADAEEDEKGLG
GREEDEEGKTDERLPVVMEQGTSTSASSSSASSSYTPPGDGAMKKGPKTF
LGEALVVLKQPDLWYAGLGLKLQLSILSTFVYFYVYSSLKRSFARVFKRP
VTFLPNLLLASLAGVVNILITMPLDTIVTRLQVAPRGQRPSFQEMVRLLW
EEQQQQRQPASQKQALLQITRRLSRFWHGLLPALLLTSNPAINYAAYDAM
KALIPLPSQRKYHNVKETFLIGILSKFLATILTYPLIRAKVMMMSEGKGG
IKGGKDEEPEVSLMTLSPSFMLAQERKGLGSILRQLVKQGGLRELYVGLD
GQIINTALKNATLLNTKDRVSRITSYIMRHFASF*
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mRNA from alignment at chr3:958719..960114+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO03G03230.1 ID=NO03G03230.1|Name=NO03G03230.1|organism=Nannochloropsis oceanica|type=mRNA|length=1396bp|location=Sequence derived from alignment at chr3:958719..960114+ (Nannochloropsis oceanica)
ATGGTGCGCGTTCCTCCCTCTGCCTTTGCCGAGGCCACGGGCGGCGCCAT TGGTGCGCTATGGACAACGCTGCTGTTTCATCCCCTAGATGTCGCCAAGC TCCGCCTCCAAGCAGAGGCCGACGCAGAGGAGGATGAGAAAGGGTTGGGG GGTAGGGAAGAGGACGAGGAGGGCAAGACGGACGAGCGATTGCCCGTGGT GATGGAGCAAGGCACCAGCACCAGTGCGAGTAGCAGCAGTGCTTCCTCGA GTTACACGCCTCCTGGTGATGGTGCAATGAAGAAGGGGCCCAAGACCTTT TTGGGAGAGGCATTGGTGGTGCTCAAGCAACCCGACTTGTGGTACGCGGG ACTAGGTATGTTAAAATGGGTAGGATGGTTTAGTTGGGTCTCGTGTTTTG TTTGTTGGTTCAATTGACTGAATGAGATGTAGTTCTCTGTGTTTCTTGAC AGTTTTTATCGTATCTCCTTGCAATTGTCTTTCGCAGCGAGCAATTATCG CTAAGTGTGAGAGGGATTGCTGACTATGCTGATACTCCTTCTTCCTCCTC CCACTACTCCTCCTCCTCCTCCTCCTTTCGCTCAATCAATCTACAGGCTT GAAACTTCAACTATCCATCCTTTCCACCTTCGTTTACTTCTACGTCTACA GTTCCCTTAAACGCAGCTTCGCACGCGTATTCAAGCGTCCCGTCACCTTC CTCCCCAATCTTCTCCTTGCCTCTCTGGCTGGAGTGGTGAACATTTTAAT CACCATGCCACTGGACACAATAGTCACTCGCCTCCAAGTCGCTCCTCGAG GGCAACGTCCCTCTTTCCAAGAAATGGTGCGTTTATTATGGGAGGAGCAG CAGCAACAACGGCAGCCGGCTTCGCAAAAGCAAGCCTTGCTTCAAATTAC TCGTCGACTCTCCCGCTTCTGGCACGGCCTCCTTCCTGCCCTCCTCCTTA CATCCAATCCGGCCATTAATTACGCTGCCTACGATGCAATGAAGGCGCTA ATTCCCCTCCCTTCTCAACGGAAATACCACAACGTCAAAGAAACGTTTTT AATCGGAATTCTCTCTAAATTCCTTGCCACGATACTTACATATCCTCTCA TCCGGGCAAAAGTCATGATGATGTCTGAGGGGAAAGGTGGTATAAAGGGA GGCAAAGATGAAGAGCCTGAAGTCAGCTTGATGACGTTGTCCCCTAGCTT TATGCTGGCGCAGGAGAGGAAGGGTTTAGGAAGTATTTTGAGACAGTTGG TGAAGCAGGGAGGGTTGCGGGAGCTCTATGTGGGCTTAGATGGGCAAATT ATAAATACGGCATTGAAGAATGCGACACTGTTGAATACGAAGGATAGGGT TAGTCGGATCACGAGCTATATCATGCGGCATTTCGCGTCGTTCTAG
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Coding sequence (CDS) from alignment at chr3:958719..960114+

>NO03G03230.1 ID=NO03G03230.1|Name=NO03G03230.1|organism=Nannochloropsis oceanica|type=CDS|length=1155bp|location=Sequence derived from alignment at chr3:958719..960114+ (Nannochloropsis oceanica)
ATGGTGCGCGTTCCTCCCTCTGCCTTTGCCGAGGCCACGGGCGGCGCCAT
TGGTGCGCTATGGACAACGCTGCTGTTTCATCCCCTAGATGTCGCCAAGC
TCCGCCTCCAAGCAGAGGCCGACGCAGAGGAGGATGAGAAAGGGTTGGGG
GGTAGGGAAGAGGACGAGGAGGGCAAGACGGACGAGCGATTGCCCGTGGT
GATGGAGCAAGGCACCAGCACCAGTGCGAGTAGCAGCAGTGCTTCCTCGA
GTTACACGCCTCCTGGTGATGGTGCAATGAAGAAGGGGCCCAAGACCTTT
TTGGGAGAGGCATTGGTGGTGCTCAAGCAACCCGACTTGTGGTACGCGGG
ACTAGGCTTGAAACTTCAACTATCCATCCTTTCCACCTTCGTTTACTTCT
ACGTCTACAGTTCCCTTAAACGCAGCTTCGCACGCGTATTCAAGCGTCCC
GTCACCTTCCTCCCCAATCTTCTCCTTGCCTCTCTGGCTGGAGTGGTGAA
CATTTTAATCACCATGCCACTGGACACAATAGTCACTCGCCTCCAAGTCG
CTCCTCGAGGGCAACGTCCCTCTTTCCAAGAAATGGTGCGTTTATTATGG
GAGGAGCAGCAGCAACAACGGCAGCCGGCTTCGCAAAAGCAAGCCTTGCT
TCAAATTACTCGTCGACTCTCCCGCTTCTGGCACGGCCTCCTTCCTGCCC
TCCTCCTTACATCCAATCCGGCCATTAATTACGCTGCCTACGATGCAATG
AAGGCGCTAATTCCCCTCCCTTCTCAACGGAAATACCACAACGTCAAAGA
AACGTTTTTAATCGGAATTCTCTCTAAATTCCTTGCCACGATACTTACAT
ATCCTCTCATCCGGGCAAAAGTCATGATGATGTCTGAGGGGAAAGGTGGT
ATAAAGGGAGGCAAAGATGAAGAGCCTGAAGTCAGCTTGATGACGTTGTC
CCCTAGCTTTATGCTGGCGCAGGAGAGGAAGGGTTTAGGAAGTATTTTGA
GACAGTTGGTGAAGCAGGGAGGGTTGCGGGAGCTCTATGTGGGCTTAGAT
GGGCAAATTATAAATACGGCATTGAAGAATGCGACACTGTTGAATACGAA
GGATAGGGTTAGTCGGATCACGAGCTATATCATGCGGCATTTCGCGTCGT
TCTAG
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Synonyms
Publications