NO03G03150.1, NO03G03150.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO03G03150.1
Unique NameNO03G03150.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length575
Alignment locationchr3:940936..941742 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:940936..941742 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO03G03150.1 vs.
Match: EWM29722.1 (hypothetical protein Naga_100022g24 [Nannochloropsis gaditana])

HSP 1 Score: 80.5 bits (197), Expect = 2.700e-12
Identity = 46/84 (54.76%), Postives = 54/84 (64.29%), Query Frame = 0 
Query:    1 MWSQNDHPSHREGGRQRERGADKFGGDKRLGGDRWHNSRSFLDQDG--GMDITLGEGHQPAGEKLVHKDFYNNFGDDFDLRDLS 83
            MWS  D+   REGGRQR RG       K    +RW  SR FL++DG  GMD+  G+G+   GEK VHK FYNNFGD F+LRDLS
Sbjct:    1 MWSTTDYAPPREGGRQRVRGFKVSSTGKDSSAERWQ-SRGFLEEDGASGMDLAAGDGYL-GGEKQVHKGFYNNFGDIFNLRDLS 82
The following BLAST results are available for this feature:
BLAST of NO03G03150.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29722.12.700e-1254.76hypothetical protein Naga_100022g24 [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO03G03150NO03G03150Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO03G03150.1NO03G03150.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO03G03150.1.cds1NO03G03150.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO03G03150.1.cds2NO03G03150.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO03G03150.1 ID=NO03G03150.1|Name=NO03G03150.1|organism=Nannochloropsis oceanica|type=mRNA|length=575bp
ACAGGCGCCTCGAACCAGCTGCCAGCATTATGTGGAGTCAGAATGATCAC
CCATCCCACCGTGAAGGTGGGCGGCAGCGGGAACGAGGGGCGGACAAGTT
CGGTGGGGACAAACGACTGGGCGGAGACCGGTGGCATAATAGCCGCTCCT
TTCTTGACCAAGACGGCGGCATGGACATAACGCTTGGCGAGGGCCACCAG
CCAGCCGGGGAAAAGCTGGTGCACAAGGACTTTTACAACAACTTTGGGGA
CGATTTCGACCTACGCGACCTTTCCTAAGGGTGGCGGCAGGGGCACCATT
ATTCTTGGAGAAGCAGTCAAGTGCGTACGAGAAAGAGGGAAGGAGGGAAA
AAGAGTAACGAAGGGGTGTGTCTGTGAATTGGAGATGGGGTCAAGAGCGA
GTAAGAACAAGAGAAGGAGGAGTTAAGGTTAACAAAACATGTGCATGTGT
GCATAGTAAATGGGAATAAAAGTCATCAAAGAGAGAAAAGAAACAGCGAA
GCGAGAGGAAAATCCCAACTCAGAGCACGGATGGACCACACGGGATTCAT
AGTAGTGTCTTGCATATGTGCACAT
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protein sequence of NO03G03150.1

>NO03G03150.1-protein ID=NO03G03150.1-protein|Name=NO03G03150.1|organism=Nannochloropsis oceanica|type=polypeptide|length=83bp
MWSQNDHPSHREGGRQRERGADKFGGDKRLGGDRWHNSRSFLDQDGGMDI
TLGEGHQPAGEKLVHKDFYNNFGDDFDLRDLS*
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mRNA from alignment at chr3:940936..941742-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO03G03150.1 ID=NO03G03150.1|Name=NO03G03150.1|organism=Nannochloropsis oceanica|type=mRNA|length=807bp|location=Sequence derived from alignment at chr3:940936..941742- (Nannochloropsis oceanica)
ACAGGCGCCTCGAACCAGCTGCCAGCATTATGTGGAGTCAGAATGATCAC
CCATCCCACCGTGAAGGTGGGCGGCAGCGGGAACGAGGGGCGGACAAGTT
CGGTGGGGACAAACGACTGGGCGGAGACCGGTGGCATAATAGCCGCTCCT
TTCTTGACCAAGACGGCGGCATGGACATAACGCTTGGCGAGGGCCACCAG
CCAGCCGGGGAAAAGCTGGTGCACAAGGACTTTTACAACAACTTTGGGGA
CGATGTGCGTACCGCATACACGGGGGGAAGGCGGGGAAGGGGGAAAAGGG
GGGAAGGAGAGAGGGGGTCGGTAAAGTGATAGGGAAAGGTAGGAAGGTTG
TTTCGTTTTCATCGAAGGGCACGTTCGACATGCTTATCACATGTGAGACA
CTCTCTCCGTATTCTTCTGTCAATGCTGACATAAAATATCACTTACCATA
CTCTCTTCTATTCCCCTATTAACACTGCACACGCAGTTCGACCTACGCGA
CCTTTCCTAAGGGTGGCGGCAGGGGCACCATTATTCTTGGAGAAGCAGTC
AAGTGCGTACGAGAAAGAGGGAAGGAGGGAAAAAGAGTAACGAAGGGGTG
TGTCTGTGAATTGGAGATGGGGTCAAGAGCGAGTAAGAACAAGAGAAGGA
GGAGTTAAGGTTAACAAAACATGTGCATGTGTGCATAGTAAATGGGAATA
AAAGTCATCAAAGAGAGAAAAGAAACAGCGAAGCGAGAGGAAAATCCCAA
CTCAGAGCACGGATGGACCACACGGGATTCATAGTAGTGTCTTGCATATG
TGCACAT
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Coding sequence (CDS) from alignment at chr3:940936..941742-

>NO03G03150.1 ID=NO03G03150.1|Name=NO03G03150.1|organism=Nannochloropsis oceanica|type=CDS|length=249bp|location=Sequence derived from alignment at chr3:940936..941742- (Nannochloropsis oceanica)
ATGTGGAGTCAGAATGATCACCCATCCCACCGTGAAGGTGGGCGGCAGCG
GGAACGAGGGGCGGACAAGTTCGGTGGGGACAAACGACTGGGCGGAGACC
GGTGGCATAATAGCCGCTCCTTTCTTGACCAAGACGGCGGCATGGACATA
ACGCTTGGCGAGGGCCACCAGCCAGCCGGGGAAAAGCTGGTGCACAAGGA
CTTTTACAACAACTTTGGGGACGATTTCGACCTACGCGACCTTTCCTAA
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Synonyms
Publications