NO03G03130.1, NO03G03130.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO03G03130.1
Unique NameNO03G03130.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2488
Alignment locationchr3:934982..937587 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:934982..937587 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO03G03130.1 vs.
Match: EWM29728.1 (retinal pigment epithelial membrane protein [Nannochloropsis gaditana])

HSP 1 Score: 951.8 bits (2459), Expect = 9.700e-274
Identity = 457/573 (79.76%), Postives = 509/573 (88.83%), Query Frame = 0
Query:   10 LLLAFSSSLADGFRLPRLLGASASSPSPTALEAT-TATSTPNPQDLAGTTGTWNYEGWIKGFETARTETSYEIKDIVEGSIPKDLTGTLFRNGHAKFDVEGLEIAHPFDGDGMISAVTFKDGRAFFRNRFVETEGYKREKQSKKIEYRGTFGTQKPGGWIRNIFDTRRKNVANTNVIFWGNRLLALWEGGLPHLMDPMTLQTFGESRLAKVLKSNQNLCAHPRYDPATDRYVFFSTDPDPRKTKVTLYEFDRDFKLVAERSEDMEGFSLLHDMVITPSYYVFFKAPLTLQPLSWLLGLTGVASCIKFQDSQPAVAYLIPRSSPSKPMIPIPVDPHFSFHFSNAYDDASTGETVVDIIRVPKLYLTDTNGVTGNPIWKTVNYEQNVPKSTLWRYRLNPSLATHTKQELWSVYCDFPSIPVSRTGQQYRYTYLAAGRDPILPTPVGVVAKFDVEKGELVDAWTAEPNEFISETVVVPKDKGGKEG-AAEDDVYLMTYVFNGDTCLSQILIFDAQSLGKGPLARLQLNSNIPLSLHGTWAPDAVYEGEDILRKFKCYSGVSRFGKIESGMAPIFEF 581
            L+L F  SL  GFR P L      SP P++L A   ATST + ++LAGTTGTWN EGWIKGFETAR+ETSYE+KDI EGSIP D+ GTLFRNGHAKFDV GLEIAHPFDGDGMISA+TF+DGRAFFRNRFVETEGYKRE++S+KIEYRGTFGTQKPGGW+ NIFD RRKNVANTNVIFWGNRLLALWEGGLPHLMDP+TLQT GESRLA VLK NQNLCAHPRYDPATDRYVFFSTDPDPRKTK+TLYEFD DFKLVAERSE+++GFSLLHDMVITPSYYVFFKAPL LQPL WLLG TGVASCI+FQD QPAVAYLIPR++PS+PM+ IPVDPHFSFHFSNA+DD+STGE VVDIIRVPKLYLTDT GVTG+PIW++V+YE++VPKSTLWRYRLNP+ ATHTK ELW +YCDFPSIP SRTGQ YRYTYLAAGRDP +PTPVGVVAKFDVE G LVD+W AEP EFISETVVVP+    + G   ED+ YLMTYVFNG+T LSQ+LIFD Q LGKGP+ARLQL+SNIPLSLHGTWAP+AVY+GE+ILRKF  ++G+ +F K+ESGMAPIFEF
Sbjct:   12 LVLCFGISL--GFRPPSLF-----SPMPSSLTALQAATSTTDSRNLAGTTGTWNREGWIKGFETARSETSYEVKDIKEGSIPTDIRGTLFRNGHAKFDVNGLEIAHPFDGDGMISALTFQDGRAFFRNRFVETEGYKREQKSQKIEYRGTFGTQKPGGWLANIFDMRRKNVANTNVIFWGNRLLALWEGGLPHLMDPITLQTLGESRLANVLKRNQNLCAHPRYDPATDRYVFFSTDPDPRKTKITLYEFDTDFKLVAERSENLQGFSLLHDMVITPSYYVFFKAPLDLQPLPWLLGRTGVASCIRFQDDQPAVAYLIPRNNPSRPMVEIPVDPHFSFHFSNAFDDSSTGEVVVDIIRVPKLYLTDTKGVTGDPIWRSVDYERDVPKSTLWRYRLNPAQATHTKAELWDLYCDFPSIPASRTGQPYRYTYLAAGRDPTVPTPVGVVAKFDVECGRLVDSWRAEPQEFISETVVVPRQGHEERGEGLEDEGYLMTYVFNGETSLSQVLIFDVQKLGKGPVARLQLDSNIPLSLHGTWAPEAVYDGEEILRKFTLFTGLKKFEKVESGMAPIFEF 577          
The following BLAST results are available for this feature:
BLAST of NO03G03130.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29728.19.700e-27479.76retinal pigment epithelial membrane protein [Nanno... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO03G03130NO03G03130Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO03G03130.1NO03G03130.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO03G03130.1.cds1NO03G03130.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO03G03130.1.cds2NO03G03130.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO03G03130.1 ID=NO03G03130.1|Name=NO03G03130.1|organism=Nannochloropsis oceanica|type=mRNA|length=2488bp
ATCCCTATCCGTACGTATAGCTGTAATGGTGAGGGGTTTGGCGCAATCGT
TTGCTTCATTTAGAAAGGAAGGGTGGGAATGGGAGTGTATGCAGCTAAGG
AGAGGGGAGGTCGACATGCGTGTTCCAACATTGGAAGCACCATTTTGTGG
ACGCGCTGCAGCATTTTTACTACCACCAAGTCCCGCTCCACCTCCTCCTA
TACAATACAGCCGCAAATCTAGCGCTTGAAGTGGGCTTATTTTCCTTCGT
AGGGTTCTCCGACCCCCCATCTCCTTTGCTTCGACAGATTGTGCGAGGAG
GTCGAACGCTAACTCGGCAGCCGCACTGTACGACCCAGCTGAAGCATCCC
CCATCACGCCCATCCACCCAATCACAGCACCATGGCACGTTATATGCTCA
TCCCAGCACTCTTGTTGGCCTTTTCGTCGAGTCTGGCCGACGGCTTTCGA
TTGCCCCGCCTTTTGGGAGCATCAGCATCGTCCCCTTCCCCCACAGCCCT
GGAGGCCACCACGGCCACCTCGACCCCGAACCCGCAAGACCTGGCTGGTA
CCACCGGCACATGGAACTATGAGGGCTGGATCAAAGGCTTTGAGACTGCG
CGCACGGAGACATCGTACGAGATCAAGGACATTGTGGAGGGCAGCATTCC
CAAGGATCTGACTGGCACCCTTTTCCGTAATGGCCACGCGAAGTTCGATG
TGGAGGGGTTAGAAATTGCTCACCCTTTCGACGGCGACGGAATGATAAGT
GCCGTGACTTTTAAGGACGGTCGGGCCTTTTTCCGCAACCGCTTTGTTGA
GACTGAGGGGTACAAGCGGGAGAAGCAGAGCAAAAAGATTGAATACCGTG
GCACATTTGGCACTCAAAAGCCGGGGGGATGGATCAGGAACATCTTTGAC
ACCCGCCGGAAAAATGTAGCGAATACAAATGTCATCTTTTGGGGAAATCG
CCTGCTGGCGTTGTGGGAGGGCGGGCTTCCGCATTTGATGGACCCAATGA
CCTTACAGACATTCGGAGAGTCCCGTCTCGCCAAGGTGTTGAAAAGCAAC
CAGAACCTGTGTGCCCACCCTCGGTACGACCCGGCCACGGACCGCTATGT
ATTTTTTTCGACTGACCCTGACCCGCGTAAGACCAAGGTGACCCTGTACG
AATTCGACAGGGATTTCAAATTGGTCGCCGAACGTTCGGAGGACATGGAA
GGTTTCTCCCTCCTCCACGACATGGTCATCACCCCCTCCTACTACGTCTT
CTTCAAAGCCCCCCTCACCCTCCAGCCCCTGTCCTGGCTCCTCGGCCTCA
CGGGCGTTGCCTCCTGTATCAAATTCCAGGACTCCCAACCCGCCGTCGCC
TACCTCATTCCTCGCTCCTCTCCCTCCAAGCCCATGATCCCCATCCCCGT
CGATCCGCACTTCTCCTTCCACTTCTCCAACGCCTACGACGACGCCTCCA
CCGGCGAGACTGTCGTTGATATCATCCGCGTCCCCAAGCTCTACCTCACC
GACACCAACGGCGTCACGGGCAATCCCATCTGGAAAACTGTCAACTACGA
GCAAAATGTTCCCAAATCGACCCTCTGGCGGTACAGGCTCAACCCCTCTC
TCGCCACCCACACCAAGCAAGAGCTTTGGAGCGTCTACTGTGACTTCCCC
TCCATCCCTGTGTCCCGTACCGGCCAACAGTATCGATATACCTATCTCGC
GGCTGGACGAGACCCTATTTTACCGACACCTGTAGGGGTGGTGGCAAAAT
TCGACGTGGAGAAAGGAGAGTTGGTTGACGCCTGGACAGCCGAGCCCAAC
GAATTTATCAGCGAGACAGTGGTGGTGCCGAAGGACAAGGGCGGGAAAGA
GGGAGCGGCGGAAGACGACGTATATCTGATGACATACGTCTTTAATGGCG
ATACTTGTTTGTCGCAGATCTTGATCTTTGACGCGCAGAGCTTGGGGAAA
GGCCCGTTGGCGCGACTGCAGTTGAACTCCAATATCCCCTTGTCACTGCA
CGGGACGTGGGCGCCAGATGCGGTGTATGAGGGAGAGGACATCCTGAGAA
AATTCAAATGCTACTCGGGTGTATCCCGCTTCGGTAAGATTGAGTCAGGC
ATGGCGCCAATTTTTGAATTCTAGGCCGTGAGGAGGGATCAGAGGTCAGG
CATGGCGCCGATTTTTGATTTTTGATTTCTAGGTTGTGAGGAGGGATAAG
AGGTGCCATTGTTAGTAGCTGGCTGGGGTGTGTGTTGCTGTTGTTGCTGT
TGTTGTTGGTGTCATTGTTGTTGTTGTACTTAGAGAAAATATCTGGAAGT
GATGTTTTACTTGGCACGACACGTCTTTCTTTCTTGTAAAAAAGAGATAT
ATGCGCGTGTGTGTGATAGAATATGCAAAAGCGGAATTAGAGAGGAAGAG
AGGACAGATGGCGAGAGAGGGGAATGAAGGACGATGTATCAGTAGGGGAA
GGTAGTTAAAAAAAGCAAACAAGCAAATTTATTTTTTC
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protein sequence of NO03G03130.1

>NO03G03130.1-protein ID=NO03G03130.1-protein|Name=NO03G03130.1|organism=Nannochloropsis oceanica|type=polypeptide|length=581bp
MARYMLIPALLLAFSSSLADGFRLPRLLGASASSPSPTALEATTATSTPN
PQDLAGTTGTWNYEGWIKGFETARTETSYEIKDIVEGSIPKDLTGTLFRN
GHAKFDVEGLEIAHPFDGDGMISAVTFKDGRAFFRNRFVETEGYKREKQS
KKIEYRGTFGTQKPGGWIRNIFDTRRKNVANTNVIFWGNRLLALWEGGLP
HLMDPMTLQTFGESRLAKVLKSNQNLCAHPRYDPATDRYVFFSTDPDPRK
TKVTLYEFDRDFKLVAERSEDMEGFSLLHDMVITPSYYVFFKAPLTLQPL
SWLLGLTGVASCIKFQDSQPAVAYLIPRSSPSKPMIPIPVDPHFSFHFSN
AYDDASTGETVVDIIRVPKLYLTDTNGVTGNPIWKTVNYEQNVPKSTLWR
YRLNPSLATHTKQELWSVYCDFPSIPVSRTGQQYRYTYLAAGRDPILPTP
VGVVAKFDVEKGELVDAWTAEPNEFISETVVVPKDKGGKEGAAEDDVYLM
TYVFNGDTCLSQILIFDAQSLGKGPLARLQLNSNIPLSLHGTWAPDAVYE
GEDILRKFKCYSGVSRFGKIESGMAPIFEF*
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mRNA from alignment at chr3:934982..937587-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO03G03130.1 ID=NO03G03130.1|Name=NO03G03130.1|organism=Nannochloropsis oceanica|type=mRNA|length=2606bp|location=Sequence derived from alignment at chr3:934982..937587- (Nannochloropsis oceanica)
ATCCCTATCCGTACGTATAGCTGTAATGGTGAGGGGTTTGGCGCAATCGT TTGCTTCATTTAGAAAGGAAGGGTGGGAATGGGAGTGTATGCAGCTAAGG AGAGGGGAGGTCGACATGCGTGTTCCAACATTGGAAGCACCATTTTGTGG ACGCGCTGCAGCATTTTTACTACCACCAAGTCCCGCTCCACCTCCTCCTA TACAATACAGCCGCAAATCTAGCGCTTGAAGTGGGCTTATTTTCCTTCGT AGGGTTCTCCGACCCCCCATCTCCTTTGCTTCGACAGATTGTGCGAGGAG GTCGAACGCTAACTCGGCAGCCGCACTGTACGACCCAGCTGAAGCATCCC CCATCACGCCCATCCACCCAATCACAGCACCATGGCACGTTATATGCTCA TCCCAGCACTCTTGTTGGCCTTTTCGTCGAGTCTGGCCGACGGCTTTCGA TTGCCCCGCCTTTTGGGAGCATCAGCATCGTCCCCTTCCCCCACAGCCCT GGAGGCCACCACGGCCACCTCGACCCCGAACCCGCAAGACCTGGCTGGTA CCACCGGCACATGGAACTATGAGGGCTGGATCAAAGGCTTTGAGACTGCG CGCACGGAGACATCGTACGAGATCAAGGACATTGTGGAGGGCAGCATTCC CAAGGATCTGACTGGCACCCTTTTCCGTAATGGCCACGCGAAGTTCGATG TGGAGGGGTTAGAAATTGCTCACCCTTTCGACGGCGACGGAATGATAAGT GCCGTGACTTTTAAGGACGGTCGGGCCTTTTTCCGCAACCGCTTTGTTGA GACTGAGGGGTACAAGCGGGAGAAGCAGAGCAAAAAGATTGAATACCGTG GCACATTTGGCACTCAAAAGCCGGGGGGATGGATCAGGAACATCTTTGAC ACCCGCCGGAAAAATGTAGCGAATACAAATGTCATCTTTTGGGGAAATCG CCTGCTGGCGTTGTGGGAGGGCGGGCTTCCGCATTTGATGGACCCAATGA CCTTACAGACATTCGGAGAGTCCCGTCTCGCCAAGGTGTTGAAAAGCAAC CAGAACCTGTGTGCCCACCCTCGGTACGACCCGGCCACGGACCGCTATGT ATTTTTTTCGACTGACCCTGACCCGCGTAAGACCAAGGTGACCCTGTACG AATTCGACAGGGATTTCAAGTGAGTAGAATGGTGGGAAGGGAGAGTAGGA GAGAGGGGAGGTAGCTTACTTCATGAATCCGTAACGCATACCTCACACAG AGAGACTCATTGTCTCTTCCCCCCACCCTTACCGCAGATTGGTCGCCGAA CGTTCGGAGGACATGGAAGGTTTCTCCCTCCTCCACGACATGGTCATCAC CCCCTCCTACTACGTCTTCTTCAAAGCCCCCCTCACCCTCCAGCCCCTGT CCTGGCTCCTCGGCCTCACGGGCGTTGCCTCCTGTATCAAATTCCAGGAC TCCCAACCCGCCGTCGCCTACCTCATTCCTCGCTCCTCTCCCTCCAAGCC CATGATCCCCATCCCCGTCGATCCGCACTTCTCCTTCCACTTCTCCAACG CCTACGACGACGCCTCCACCGGCGAGACTGTCGTTGATATCATCCGCGTC CCCAAGCTCTACCTCACCGACACCAACGGCGTCACGGGCAATCCCATCTG GAAAACTGTCAACTACGAGCAAAATGTTCCCAAATCGACCCTCTGGCGGT ACAGGCTCAACCCCTCTCTCGCCACCCACACCAAGCAAGAGCTTTGGAGC GTCTACTGTGACTTCCCCTCCATCCCTGTGTCCCGTACCGGCCAACAGTA TCGATATACCTATCTCGCGGCTGGACGAGACCCTATTTTACCGACACCTG TAGGGGTGGTGGCAAAATTCGACGTGGAGAAAGGAGAGTTGGTTGACGCC TGGACAGCCGAGCCCAACGAATTTATCAGCGAGACAGTGGTGGTGCCGAA GGACAAGGGCGGGAAAGAGGGAGCGGCGGAAGACGACGTATATCTGATGA CATACGTCTTTAATGGCGATACTTGTTTGTCGCAGATCTTGATCTTTGAC GCGCAGAGCTTGGGGAAAGGCCCGTTGGCGCGACTGCAGTTGAACTCCAA TATCCCCTTGTCACTGCACGGGACGTGGGCGCCAGATGCGGTGTATGAGG GAGAGGACATCCTGAGAAAATTCAAATGCTACTCGGGTGTATCCCGCTTC GGTAAGATTGAGTCAGGCATGGCGCCAATTTTTGAATTCTAGGCCGTGAG GAGGGATCAGAGGTCAGGCATGGCGCCGATTTTTGATTTTTGATTTCTAG GTTGTGAGGAGGGATAAGAGGTGCCATTGTTAGTAGCTGGCTGGGGTGTG TGTTGCTGTTGTTGCTGTTGTTGTTGGTGTCATTGTTGTTGTTGTACTTA GAGAAAATATCTGGAAGTGATGTTTTACTTGGCACGACACGTCTTTCTTT CTTGTAAAAAAGAGATATATGCGCGTGTGTGTGATAGAATATGCAAAAGC GGAATTAGAGAGGAAGAGAGGACAGATGGCGAGAGAGGGGAATGAAGGAC GATGTATCAGTAGGGGAAGGTAGTTAAAAAAAGCAAACAAGCAAATTTAT TTTTTC
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Coding sequence (CDS) from alignment at chr3:934982..937587-

>NO03G03130.1 ID=NO03G03130.1|Name=NO03G03130.1|organism=Nannochloropsis oceanica|type=CDS|length=1743bp|location=Sequence derived from alignment at chr3:934982..937587- (Nannochloropsis oceanica)
ATGGCACGTTATATGCTCATCCCAGCACTCTTGTTGGCCTTTTCGTCGAG
TCTGGCCGACGGCTTTCGATTGCCCCGCCTTTTGGGAGCATCAGCATCGT
CCCCTTCCCCCACAGCCCTGGAGGCCACCACGGCCACCTCGACCCCGAAC
CCGCAAGACCTGGCTGGTACCACCGGCACATGGAACTATGAGGGCTGGAT
CAAAGGCTTTGAGACTGCGCGCACGGAGACATCGTACGAGATCAAGGACA
TTGTGGAGGGCAGCATTCCCAAGGATCTGACTGGCACCCTTTTCCGTAAT
GGCCACGCGAAGTTCGATGTGGAGGGGTTAGAAATTGCTCACCCTTTCGA
CGGCGACGGAATGATAAGTGCCGTGACTTTTAAGGACGGTCGGGCCTTTT
TCCGCAACCGCTTTGTTGAGACTGAGGGGTACAAGCGGGAGAAGCAGAGC
AAAAAGATTGAATACCGTGGCACATTTGGCACTCAAAAGCCGGGGGGATG
GATCAGGAACATCTTTGACACCCGCCGGAAAAATGTAGCGAATACAAATG
TCATCTTTTGGGGAAATCGCCTGCTGGCGTTGTGGGAGGGCGGGCTTCCG
CATTTGATGGACCCAATGACCTTACAGACATTCGGAGAGTCCCGTCTCGC
CAAGGTGTTGAAAAGCAACCAGAACCTGTGTGCCCACCCTCGGTACGACC
CGGCCACGGACCGCTATGTATTTTTTTCGACTGACCCTGACCCGCGTAAG
ACCAAGGTGACCCTGTACGAATTCGACAGGGATTTCAAATTGGTCGCCGA
ACGTTCGGAGGACATGGAAGGTTTCTCCCTCCTCCACGACATGGTCATCA
CCCCCTCCTACTACGTCTTCTTCAAAGCCCCCCTCACCCTCCAGCCCCTG
TCCTGGCTCCTCGGCCTCACGGGCGTTGCCTCCTGTATCAAATTCCAGGA
CTCCCAACCCGCCGTCGCCTACCTCATTCCTCGCTCCTCTCCCTCCAAGC
CCATGATCCCCATCCCCGTCGATCCGCACTTCTCCTTCCACTTCTCCAAC
GCCTACGACGACGCCTCCACCGGCGAGACTGTCGTTGATATCATCCGCGT
CCCCAAGCTCTACCTCACCGACACCAACGGCGTCACGGGCAATCCCATCT
GGAAAACTGTCAACTACGAGCAAAATGTTCCCAAATCGACCCTCTGGCGG
TACAGGCTCAACCCCTCTCTCGCCACCCACACCAAGCAAGAGCTTTGGAG
CGTCTACTGTGACTTCCCCTCCATCCCTGTGTCCCGTACCGGCCAACAGT
ATCGATATACCTATCTCGCGGCTGGACGAGACCCTATTTTACCGACACCT
GTAGGGGTGGTGGCAAAATTCGACGTGGAGAAAGGAGAGTTGGTTGACGC
CTGGACAGCCGAGCCCAACGAATTTATCAGCGAGACAGTGGTGGTGCCGA
AGGACAAGGGCGGGAAAGAGGGAGCGGCGGAAGACGACGTATATCTGATG
ACATACGTCTTTAATGGCGATACTTGTTTGTCGCAGATCTTGATCTTTGA
CGCGCAGAGCTTGGGGAAAGGCCCGTTGGCGCGACTGCAGTTGAACTCCA
ATATCCCCTTGTCACTGCACGGGACGTGGGCGCCAGATGCGGTGTATGAG
GGAGAGGACATCCTGAGAAAATTCAAATGCTACTCGGGTGTATCCCGCTT
CGGTAAGATTGAGTCAGGCATGGCGCCAATTTTTGAATTCTAG
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Synonyms
Publications