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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr3 | genome | chr3:934982..937587 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO03G03130.1 vs.
Match: EWM29728.1 (retinal pigment epithelial membrane protein [Nannochloropsis gaditana]) HSP 1 Score: 951.8 bits (2459), Expect = 9.700e-274 Identity = 457/573 (79.76%), Postives = 509/573 (88.83%), Query Frame = 0
Query: 10 LLLAFSSSLADGFRLPRLLGASASSPSPTALEAT-TATSTPNPQDLAGTTGTWNYEGWIKGFETARTETSYEIKDIVEGSIPKDLTGTLFRNGHAKFDVEGLEIAHPFDGDGMISAVTFKDGRAFFRNRFVETEGYKREKQSKKIEYRGTFGTQKPGGWIRNIFDTRRKNVANTNVIFWGNRLLALWEGGLPHLMDPMTLQTFGESRLAKVLKSNQNLCAHPRYDPATDRYVFFSTDPDPRKTKVTLYEFDRDFKLVAERSEDMEGFSLLHDMVITPSYYVFFKAPLTLQPLSWLLGLTGVASCIKFQDSQPAVAYLIPRSSPSKPMIPIPVDPHFSFHFSNAYDDASTGETVVDIIRVPKLYLTDTNGVTGNPIWKTVNYEQNVPKSTLWRYRLNPSLATHTKQELWSVYCDFPSIPVSRTGQQYRYTYLAAGRDPILPTPVGVVAKFDVEKGELVDAWTAEPNEFISETVVVPKDKGGKEG-AAEDDVYLMTYVFNGDTCLSQILIFDAQSLGKGPLARLQLNSNIPLSLHGTWAPDAVYEGEDILRKFKCYSGVSRFGKIESGMAPIFEF 581
L+L F SL GFR P L SP P++L A ATST + ++LAGTTGTWN EGWIKGFETAR+ETSYE+KDI EGSIP D+ GTLFRNGHAKFDV GLEIAHPFDGDGMISA+TF+DGRAFFRNRFVETEGYKRE++S+KIEYRGTFGTQKPGGW+ NIFD RRKNVANTNVIFWGNRLLALWEGGLPHLMDP+TLQT GESRLA VLK NQNLCAHPRYDPATDRYVFFSTDPDPRKTK+TLYEFD DFKLVAERSE+++GFSLLHDMVITPSYYVFFKAPL LQPL WLLG TGVASCI+FQD QPAVAYLIPR++PS+PM+ IPVDPHFSFHFSNA+DD+STGE VVDIIRVPKLYLTDT GVTG+PIW++V+YE++VPKSTLWRYRLNP+ ATHTK ELW +YCDFPSIP SRTGQ YRYTYLAAGRDP +PTPVGVVAKFDVE G LVD+W AEP EFISETVVVP+ + G ED+ YLMTYVFNG+T LSQ+LIFD Q LGKGP+ARLQL+SNIPLSLHGTWAP+AVY+GE+ILRKF ++G+ +F K+ESGMAPIFEF
Sbjct: 12 LVLCFGISL--GFRPPSLF-----SPMPSSLTALQAATSTTDSRNLAGTTGTWNREGWIKGFETARSETSYEVKDIKEGSIPTDIRGTLFRNGHAKFDVNGLEIAHPFDGDGMISALTFQDGRAFFRNRFVETEGYKREQKSQKIEYRGTFGTQKPGGWLANIFDMRRKNVANTNVIFWGNRLLALWEGGLPHLMDPITLQTLGESRLANVLKRNQNLCAHPRYDPATDRYVFFSTDPDPRKTKITLYEFDTDFKLVAERSENLQGFSLLHDMVITPSYYVFFKAPLDLQPLPWLLGRTGVASCIRFQDDQPAVAYLIPRNNPSRPMVEIPVDPHFSFHFSNAFDDSSTGEVVVDIIRVPKLYLTDTKGVTGDPIWRSVDYERDVPKSTLWRYRLNPAQATHTKAELWDLYCDFPSIPASRTGQPYRYTYLAAGRDPTVPTPVGVVAKFDVECGRLVDSWRAEPQEFISETVVVPRQGHEERGEGLEDEGYLMTYVFNGETSLSQVLIFDVQKLGKGPVARLQLDSNIPLSLHGTWAPEAVYDGEEILRKFTLFTGLKKFEKVESGMAPIFEF 577
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO03G03130.1 ID=NO03G03130.1|Name=NO03G03130.1|organism=Nannochloropsis oceanica|type=mRNA|length=2488bp ATCCCTATCCGTACGTATAGCTGTAATGGTGAGGGGTTTGGCGCAATCGT TTGCTTCATTTAGAAAGGAAGGGTGGGAATGGGAGTGTATGCAGCTAAGG AGAGGGGAGGTCGACATGCGTGTTCCAACATTGGAAGCACCATTTTGTGG ACGCGCTGCAGCATTTTTACTACCACCAAGTCCCGCTCCACCTCCTCCTA TACAATACAGCCGCAAATCTAGCGCTTGAAGTGGGCTTATTTTCCTTCGT AGGGTTCTCCGACCCCCCATCTCCTTTGCTTCGACAGATTGTGCGAGGAG GTCGAACGCTAACTCGGCAGCCGCACTGTACGACCCAGCTGAAGCATCCC CCATCACGCCCATCCACCCAATCACAGCACCATGGCACGTTATATGCTCA TCCCAGCACTCTTGTTGGCCTTTTCGTCGAGTCTGGCCGACGGCTTTCGA TTGCCCCGCCTTTTGGGAGCATCAGCATCGTCCCCTTCCCCCACAGCCCT GGAGGCCACCACGGCCACCTCGACCCCGAACCCGCAAGACCTGGCTGGTA CCACCGGCACATGGAACTATGAGGGCTGGATCAAAGGCTTTGAGACTGCG CGCACGGAGACATCGTACGAGATCAAGGACATTGTGGAGGGCAGCATTCC CAAGGATCTGACTGGCACCCTTTTCCGTAATGGCCACGCGAAGTTCGATG TGGAGGGGTTAGAAATTGCTCACCCTTTCGACGGCGACGGAATGATAAGT GCCGTGACTTTTAAGGACGGTCGGGCCTTTTTCCGCAACCGCTTTGTTGA GACTGAGGGGTACAAGCGGGAGAAGCAGAGCAAAAAGATTGAATACCGTG GCACATTTGGCACTCAAAAGCCGGGGGGATGGATCAGGAACATCTTTGAC ACCCGCCGGAAAAATGTAGCGAATACAAATGTCATCTTTTGGGGAAATCG CCTGCTGGCGTTGTGGGAGGGCGGGCTTCCGCATTTGATGGACCCAATGA CCTTACAGACATTCGGAGAGTCCCGTCTCGCCAAGGTGTTGAAAAGCAAC CAGAACCTGTGTGCCCACCCTCGGTACGACCCGGCCACGGACCGCTATGT ATTTTTTTCGACTGACCCTGACCCGCGTAAGACCAAGGTGACCCTGTACG AATTCGACAGGGATTTCAAATTGGTCGCCGAACGTTCGGAGGACATGGAA GGTTTCTCCCTCCTCCACGACATGGTCATCACCCCCTCCTACTACGTCTT CTTCAAAGCCCCCCTCACCCTCCAGCCCCTGTCCTGGCTCCTCGGCCTCA CGGGCGTTGCCTCCTGTATCAAATTCCAGGACTCCCAACCCGCCGTCGCC TACCTCATTCCTCGCTCCTCTCCCTCCAAGCCCATGATCCCCATCCCCGT CGATCCGCACTTCTCCTTCCACTTCTCCAACGCCTACGACGACGCCTCCA CCGGCGAGACTGTCGTTGATATCATCCGCGTCCCCAAGCTCTACCTCACC GACACCAACGGCGTCACGGGCAATCCCATCTGGAAAACTGTCAACTACGA GCAAAATGTTCCCAAATCGACCCTCTGGCGGTACAGGCTCAACCCCTCTC TCGCCACCCACACCAAGCAAGAGCTTTGGAGCGTCTACTGTGACTTCCCC TCCATCCCTGTGTCCCGTACCGGCCAACAGTATCGATATACCTATCTCGC GGCTGGACGAGACCCTATTTTACCGACACCTGTAGGGGTGGTGGCAAAAT TCGACGTGGAGAAAGGAGAGTTGGTTGACGCCTGGACAGCCGAGCCCAAC GAATTTATCAGCGAGACAGTGGTGGTGCCGAAGGACAAGGGCGGGAAAGA GGGAGCGGCGGAAGACGACGTATATCTGATGACATACGTCTTTAATGGCG ATACTTGTTTGTCGCAGATCTTGATCTTTGACGCGCAGAGCTTGGGGAAA GGCCCGTTGGCGCGACTGCAGTTGAACTCCAATATCCCCTTGTCACTGCA CGGGACGTGGGCGCCAGATGCGGTGTATGAGGGAGAGGACATCCTGAGAA AATTCAAATGCTACTCGGGTGTATCCCGCTTCGGTAAGATTGAGTCAGGC ATGGCGCCAATTTTTGAATTCTAGGCCGTGAGGAGGGATCAGAGGTCAGG CATGGCGCCGATTTTTGATTTTTGATTTCTAGGTTGTGAGGAGGGATAAG AGGTGCCATTGTTAGTAGCTGGCTGGGGTGTGTGTTGCTGTTGTTGCTGT TGTTGTTGGTGTCATTGTTGTTGTTGTACTTAGAGAAAATATCTGGAAGT GATGTTTTACTTGGCACGACACGTCTTTCTTTCTTGTAAAAAAGAGATAT ATGCGCGTGTGTGTGATAGAATATGCAAAAGCGGAATTAGAGAGGAAGAG AGGACAGATGGCGAGAGAGGGGAATGAAGGACGATGTATCAGTAGGGGAA GGTAGTTAAAAAAAGCAAACAAGCAAATTTATTTTTTC back to topprotein sequence of NO03G03130.1 >NO03G03130.1-protein ID=NO03G03130.1-protein|Name=NO03G03130.1|organism=Nannochloropsis oceanica|type=polypeptide|length=581bp MARYMLIPALLLAFSSSLADGFRLPRLLGASASSPSPTALEATTATSTPN PQDLAGTTGTWNYEGWIKGFETARTETSYEIKDIVEGSIPKDLTGTLFRN GHAKFDVEGLEIAHPFDGDGMISAVTFKDGRAFFRNRFVETEGYKREKQS KKIEYRGTFGTQKPGGWIRNIFDTRRKNVANTNVIFWGNRLLALWEGGLP HLMDPMTLQTFGESRLAKVLKSNQNLCAHPRYDPATDRYVFFSTDPDPRK TKVTLYEFDRDFKLVAERSEDMEGFSLLHDMVITPSYYVFFKAPLTLQPL SWLLGLTGVASCIKFQDSQPAVAYLIPRSSPSKPMIPIPVDPHFSFHFSN AYDDASTGETVVDIIRVPKLYLTDTNGVTGNPIWKTVNYEQNVPKSTLWR YRLNPSLATHTKQELWSVYCDFPSIPVSRTGQQYRYTYLAAGRDPILPTP VGVVAKFDVEKGELVDAWTAEPNEFISETVVVPKDKGGKEGAAEDDVYLM TYVFNGDTCLSQILIFDAQSLGKGPLARLQLNSNIPLSLHGTWAPDAVYE GEDILRKFKCYSGVSRFGKIESGMAPIFEF* back to topmRNA from alignment at chr3:934982..937587- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO03G03130.1 ID=NO03G03130.1|Name=NO03G03130.1|organism=Nannochloropsis oceanica|type=mRNA|length=2606bp|location=Sequence derived from alignment at chr3:934982..937587- (Nannochloropsis oceanica) ATCCCTATCCGTACGTATAGCTGTAATGGTGAGGGGTTTGGCGCAATCGT
TTGCTTCATTTAGAAAGGAAGGGTGGGAATGGGAGTGTATGCAGCTAAGG
AGAGGGGAGGTCGACATGCGTGTTCCAACATTGGAAGCACCATTTTGTGG
ACGCGCTGCAGCATTTTTACTACCACCAAGTCCCGCTCCACCTCCTCCTA
TACAATACAGCCGCAAATCTAGCGCTTGAAGTGGGCTTATTTTCCTTCGT
AGGGTTCTCCGACCCCCCATCTCCTTTGCTTCGACAGATTGTGCGAGGAG
GTCGAACGCTAACTCGGCAGCCGCACTGTACGACCCAGCTGAAGCATCCC
CCATCACGCCCATCCACCCAATCACAGCACCATGGCACGTTATATGCTCA
TCCCAGCACTCTTGTTGGCCTTTTCGTCGAGTCTGGCCGACGGCTTTCGA
TTGCCCCGCCTTTTGGGAGCATCAGCATCGTCCCCTTCCCCCACAGCCCT
GGAGGCCACCACGGCCACCTCGACCCCGAACCCGCAAGACCTGGCTGGTA
CCACCGGCACATGGAACTATGAGGGCTGGATCAAAGGCTTTGAGACTGCG
CGCACGGAGACATCGTACGAGATCAAGGACATTGTGGAGGGCAGCATTCC
CAAGGATCTGACTGGCACCCTTTTCCGTAATGGCCACGCGAAGTTCGATG
TGGAGGGGTTAGAAATTGCTCACCCTTTCGACGGCGACGGAATGATAAGT
GCCGTGACTTTTAAGGACGGTCGGGCCTTTTTCCGCAACCGCTTTGTTGA
GACTGAGGGGTACAAGCGGGAGAAGCAGAGCAAAAAGATTGAATACCGTG
GCACATTTGGCACTCAAAAGCCGGGGGGATGGATCAGGAACATCTTTGAC
ACCCGCCGGAAAAATGTAGCGAATACAAATGTCATCTTTTGGGGAAATCG
CCTGCTGGCGTTGTGGGAGGGCGGGCTTCCGCATTTGATGGACCCAATGA
CCTTACAGACATTCGGAGAGTCCCGTCTCGCCAAGGTGTTGAAAAGCAAC
CAGAACCTGTGTGCCCACCCTCGGTACGACCCGGCCACGGACCGCTATGT
ATTTTTTTCGACTGACCCTGACCCGCGTAAGACCAAGGTGACCCTGTACG
AATTCGACAGGGATTTCAAGTGAGTAGAATGGTGGGAAGGGAGAGTAGGA
GAGAGGGGAGGTAGCTTACTTCATGAATCCGTAACGCATACCTCACACAG
AGAGACTCATTGTCTCTTCCCCCCACCCTTACCGCAGATTGGTCGCCGAA
CGTTCGGAGGACATGGAAGGTTTCTCCCTCCTCCACGACATGGTCATCAC
CCCCTCCTACTACGTCTTCTTCAAAGCCCCCCTCACCCTCCAGCCCCTGT
CCTGGCTCCTCGGCCTCACGGGCGTTGCCTCCTGTATCAAATTCCAGGAC
TCCCAACCCGCCGTCGCCTACCTCATTCCTCGCTCCTCTCCCTCCAAGCC
CATGATCCCCATCCCCGTCGATCCGCACTTCTCCTTCCACTTCTCCAACG
CCTACGACGACGCCTCCACCGGCGAGACTGTCGTTGATATCATCCGCGTC
CCCAAGCTCTACCTCACCGACACCAACGGCGTCACGGGCAATCCCATCTG
GAAAACTGTCAACTACGAGCAAAATGTTCCCAAATCGACCCTCTGGCGGT
ACAGGCTCAACCCCTCTCTCGCCACCCACACCAAGCAAGAGCTTTGGAGC
GTCTACTGTGACTTCCCCTCCATCCCTGTGTCCCGTACCGGCCAACAGTA
TCGATATACCTATCTCGCGGCTGGACGAGACCCTATTTTACCGACACCTG
TAGGGGTGGTGGCAAAATTCGACGTGGAGAAAGGAGAGTTGGTTGACGCC
TGGACAGCCGAGCCCAACGAATTTATCAGCGAGACAGTGGTGGTGCCGAA
GGACAAGGGCGGGAAAGAGGGAGCGGCGGAAGACGACGTATATCTGATGA
CATACGTCTTTAATGGCGATACTTGTTTGTCGCAGATCTTGATCTTTGAC
GCGCAGAGCTTGGGGAAAGGCCCGTTGGCGCGACTGCAGTTGAACTCCAA
TATCCCCTTGTCACTGCACGGGACGTGGGCGCCAGATGCGGTGTATGAGG
GAGAGGACATCCTGAGAAAATTCAAATGCTACTCGGGTGTATCCCGCTTC
GGTAAGATTGAGTCAGGCATGGCGCCAATTTTTGAATTCTAGGCCGTGAG
GAGGGATCAGAGGTCAGGCATGGCGCCGATTTTTGATTTTTGATTTCTAG
GTTGTGAGGAGGGATAAGAGGTGCCATTGTTAGTAGCTGGCTGGGGTGTG
TGTTGCTGTTGTTGCTGTTGTTGTTGGTGTCATTGTTGTTGTTGTACTTA
GAGAAAATATCTGGAAGTGATGTTTTACTTGGCACGACACGTCTTTCTTT
CTTGTAAAAAAGAGATATATGCGCGTGTGTGTGATAGAATATGCAAAAGC
GGAATTAGAGAGGAAGAGAGGACAGATGGCGAGAGAGGGGAATGAAGGAC
GATGTATCAGTAGGGGAAGGTAGTTAAAAAAAGCAAACAAGCAAATTTAT
TTTTTC back to topCoding sequence (CDS) from alignment at chr3:934982..937587- >NO03G03130.1 ID=NO03G03130.1|Name=NO03G03130.1|organism=Nannochloropsis oceanica|type=CDS|length=1743bp|location=Sequence derived from alignment at chr3:934982..937587- (Nannochloropsis oceanica) ATGGCACGTTATATGCTCATCCCAGCACTCTTGTTGGCCTTTTCGTCGAG TCTGGCCGACGGCTTTCGATTGCCCCGCCTTTTGGGAGCATCAGCATCGT CCCCTTCCCCCACAGCCCTGGAGGCCACCACGGCCACCTCGACCCCGAAC CCGCAAGACCTGGCTGGTACCACCGGCACATGGAACTATGAGGGCTGGAT CAAAGGCTTTGAGACTGCGCGCACGGAGACATCGTACGAGATCAAGGACA TTGTGGAGGGCAGCATTCCCAAGGATCTGACTGGCACCCTTTTCCGTAAT GGCCACGCGAAGTTCGATGTGGAGGGGTTAGAAATTGCTCACCCTTTCGA CGGCGACGGAATGATAAGTGCCGTGACTTTTAAGGACGGTCGGGCCTTTT TCCGCAACCGCTTTGTTGAGACTGAGGGGTACAAGCGGGAGAAGCAGAGC AAAAAGATTGAATACCGTGGCACATTTGGCACTCAAAAGCCGGGGGGATG GATCAGGAACATCTTTGACACCCGCCGGAAAAATGTAGCGAATACAAATG TCATCTTTTGGGGAAATCGCCTGCTGGCGTTGTGGGAGGGCGGGCTTCCG CATTTGATGGACCCAATGACCTTACAGACATTCGGAGAGTCCCGTCTCGC CAAGGTGTTGAAAAGCAACCAGAACCTGTGTGCCCACCCTCGGTACGACC CGGCCACGGACCGCTATGTATTTTTTTCGACTGACCCTGACCCGCGTAAG ACCAAGGTGACCCTGTACGAATTCGACAGGGATTTCAAATTGGTCGCCGA ACGTTCGGAGGACATGGAAGGTTTCTCCCTCCTCCACGACATGGTCATCA CCCCCTCCTACTACGTCTTCTTCAAAGCCCCCCTCACCCTCCAGCCCCTG TCCTGGCTCCTCGGCCTCACGGGCGTTGCCTCCTGTATCAAATTCCAGGA CTCCCAACCCGCCGTCGCCTACCTCATTCCTCGCTCCTCTCCCTCCAAGC CCATGATCCCCATCCCCGTCGATCCGCACTTCTCCTTCCACTTCTCCAAC GCCTACGACGACGCCTCCACCGGCGAGACTGTCGTTGATATCATCCGCGT CCCCAAGCTCTACCTCACCGACACCAACGGCGTCACGGGCAATCCCATCT GGAAAACTGTCAACTACGAGCAAAATGTTCCCAAATCGACCCTCTGGCGG TACAGGCTCAACCCCTCTCTCGCCACCCACACCAAGCAAGAGCTTTGGAG CGTCTACTGTGACTTCCCCTCCATCCCTGTGTCCCGTACCGGCCAACAGT ATCGATATACCTATCTCGCGGCTGGACGAGACCCTATTTTACCGACACCT GTAGGGGTGGTGGCAAAATTCGACGTGGAGAAAGGAGAGTTGGTTGACGC CTGGACAGCCGAGCCCAACGAATTTATCAGCGAGACAGTGGTGGTGCCGA AGGACAAGGGCGGGAAAGAGGGAGCGGCGGAAGACGACGTATATCTGATG ACATACGTCTTTAATGGCGATACTTGTTTGTCGCAGATCTTGATCTTTGA CGCGCAGAGCTTGGGGAAAGGCCCGTTGGCGCGACTGCAGTTGAACTCCA ATATCCCCTTGTCACTGCACGGGACGTGGGCGCCAGATGCGGTGTATGAG GGAGAGGACATCCTGAGAAAATTCAAATGCTACTCGGGTGTATCCCGCTT CGGTAAGATTGAGTCAGGCATGGCGCCAATTTTTGAATTCTAG back to top
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