NO03G03110.4, NO03G03110.4 (mRNA) Nannochloropsis oceanica

Overview
NameNO03G03110.4
Unique NameNO03G03110.4
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2684
Alignment locationchr3:929187..932251 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:929187..932251 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO03G03110.4 vs.
Match: EWM29755.1 (aspartate-semialdehyde dehydrogenase [Nannochloropsis gaditana])

HSP 1 Score: 320.9 bits (821), Expect = 4.500e-84
Identity = 171/217 (78.80%), Postives = 183/217 (84.33%), Query Frame = 0
Query:    1 MRAVLPVMCLFLSYASAFMPTMPASALRATTTTSAWRRRTGVALTPMMTAVDGGKLKVGIVGATGAVGEEIVKVLGNRQFPVSELHLYASARSAGKSVPTPFGSVTIEEFELGNARGLDVIFLAVGGDFSLKYAHKLSEGDGPVVIDNSSAFRMDPDVPLVVPEINHKTAKGKKLIANPNCTTAIGLMALFPLHVAYGIKKVIMSTYQAASGAGAEG 218
            MRA++ V  L++  A AFMPT   SA RA   TSA RRR G  LTPMM    G  LKVGIVGATGAVGEEIVKVLG+R FPVSELHLYASARSAGKSV TPFGSV+IEEF+L  ARGLDVIFLAVGGDFS +YA KLS  DGPVVIDNSSAFR+DP VPL+VPEIN + AKGKKLIANPNCTTAIGLMALFPLHVA+GIKKVIMSTYQAASGAGAEG
Sbjct:   39 MRALIAVFSLYICSAMAFMPTTLPSASRACVRTSAGRRRAGTRLTPMMAVDQGSTLKVGIVGATGAVGEEIVKVLGHRNFPVSELHLYASARSAGKSVATPFGSVSIEEFDLDKARGLDVIFLAVGGDFSKEYAIKLSATDGPVVIDNSSAFRLDPSVPLIVPEINQQAAKGKKLIANPNCTTAIGLMALFPLHVAFGIKKVIMSTYQAASGAGAEG 255          
The following BLAST results are available for this feature:
BLAST of NO03G03110.4 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29755.14.500e-8478.80aspartate-semialdehyde dehydrogenase [Nannochlorop... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO03G03110NO03G03110Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO03G03110.4NO03G03110.4-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO03G03110.4.cds1NO03G03110.4.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO03G03110.4.cds2NO03G03110.4.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO03G03110.4 ID=NO03G03110.4|Name=NO03G03110.4|organism=Nannochloropsis oceanica|type=mRNA|length=2684bp
GCTCATTATTTTGCCTTTATACTGTGATGGCGGCTTTTGTAGCAATGCAG
GATGGAAGGCCGCTCTGATTTTAAGTATCTTTTCCATCATCGCAGCAGCA
GCACCATCAGCACCAGCCCAACATCATCCATCTATTACCCTATTTTGCCG
GAAATGACCCCGCACATTTGTGTCCATCGTAGAGGTGGTACACAAATACC
GCGCTCTATTCCCTTCGAATCTGCTGCGAACGATTTTAGCGCATTTTGCT
CACCCACCTCACATTACACTCCCTCCCCCCAGGCCAGGCCACTGTCGCCG
TCGCTGGTTCTTCGCCGCTGCTGCAACCACAGCCACAACGCCCCCTTGAA
CCATGCGTGCGGTTCTACCTGTCATGTGCTTGTTTCTATCCTATGCTTCA
GCCTTTATGCCGACTATGCCTGCCAGCGCGTTACGAGCCACCACCACCAC
CTCCGCATGGCGAAGGCGGACGGGAGTTGCGCTGACGCCCATGATGACCG
CGGTTGACGGGGGTAAGCTCAAGGTAGGAATTGTGGGGGCGACGGGCGCA
GTAGGAGAGGAGATTGTGAAGGTGCTGGGCAATCGGCAATTCCCCGTGTC
TGAGCTTCATTTGTACGCCTCGGCGCGTTCCGCGGGTAAGAGCGTGCCGA
CGCCGTTTGGGTCTGTGACCATCGAGGAGTTTGAGCTCGGCAATGCGAGA
GGATTGGACGTGATTTTCCTGGCGGTCGGTGGGGACTTCTCATTGAAGTA
CGCACACAAGCTCTCGGAGGGGGACGGGCCTGTTGTAATCGACAATTCAT
CTGCTTTTCGAATGGATCCTGACGTCCCGCTGGTGGTGCCGGAGATCAAC
CACAAGACGGCAAAAGGGAAGAAACTTATTGCCAACCCGAATTGTACGAC
GGCGATCGGGTTGATGGCTCTTTTCCCGCTGCATGTGGCCTATGGAATTA
AAAAGGTGATTATGTCGACGTACCAGGCGGCGTCGGGTGCCGGGGCCGAA
GGTGCGTGGTGTTGGGAGGGCAGAGGTGGAAAAAGAGGATATATACCGAT
ACCCTTATATATTCTTGTTGTCGTTGGCGGCGACACATGGAACATGAAAG
CGGGAGTTATGCCTCCTAATCACTCGCATTCAGGACCCTCCCTCCCCTTC
TCCGCCCACCATCCCCTCCCCAGGCATGGACGAGCTCAAGACGGGCATCG
CCAGCTTTGTCAAAGGCCAGCCGATCAAGAACGAGTTCTTCGCCTACCCC
CTCCCCTTCAACGTCATTCCTCACATTGACGTCTTCCAGGAAAATGGGTA
CACGAAGGAGGAGATGAAAGTCACTTGGGAGGCACGCAAGATCTTGGGGG
TTCCCGATTTGGCTGTTAGGTAGGGAGAGAAGGGGAGGAGGGGGGGAGGG
GTTTGTGGTTTCGAAGCTCTGTGCGTGCGCTGTATTTTGCCTGTACCTCG
TTTCTGCCTCCTCGGACGTTCGCAATTGATATCACACGTACCCCTCCACT
CTTCTTTGCCTTTTTTCTGGGCTGACCCCTTCCATTCCTCAAGTTGCACT
GCAGTCCGCATCCCCACCCTGCGGGCTCACTCAGAGGCCATTGTCATCGA
GACCGAAAAGCCCGTCACGCCCGAAGGCGCCCGAGAGGTCCTTGGGAACT
TTCCGGGACTCAAGGTGGTGGATGACACAAGCACGAAGCAATACCCTATG
CCCTTGACAGCCACCAACCACTACGACGTGGAGGTGGGCCGCATTCGTCA
GAACATCGTCTTTGGGGACCACGGCCTGGAGCTGTTTGTGTGTGGGGATC
AGCTTTTACGCGGGGCTGCATTAAATGCTGTGATAATTGCTGAGATGCTG
TAGAGTGATGAGGAAAGACGAGAGGGAAGGGTTATGGGGCGGGGAATATT
GAGGTTTGACACAGACTACACAGAGTAAGGATATAAAACATTTGCAAAAG
CACGCATAAGTGGCTGTAAAGACATTGCCCATCGTCGGAAAGAGGAAAAC
AGAACATCGTTAAAAAAAAAAAAAAAGAAGCACAAAGCGTTCTTACCTAA
TGCCCGGTTTGTCCCTATGGCTACACAAAACTGAAATGGTTCTGCTCCAA
CGAACCATAACTCATCGTAAATTTAGGTAAACGACGAAATTTGGCGTGGT
CTGACCTTCGTTAGTATGATCTGTGGCGTTTTTTTTTAGGATTGGCTTTT
TATGAGGCGATGTGGTGCCCACGAGGAGGAAAAACAAGAGTGCAAAAGAG
ATGACTTACAGCCAGTCAATGACACATGTTGTTACCACGATCGCATCTAC
TTTGAGGTGGACAAGAGATTTGAATATGTGAAGGTCAGGAAGAAGGAAGA
GAAGGGTCCCAGCGTGAACAGGGTCGCAGGTGCGGGTGCTTGTTCTTCCT
ACATTCAAGCCAAAAATCAATCAAAAAAGACTAGATATCGAGACAAAAGA
CTACAGACTTCCAATTTATACTGGGTAAAGATCATTCACAGGTCTTTGAA
AGCCATGTTCACTCCTCCATAGGAGGGCGACAGGAGAGAGGCAAGAGGGA
GAGGGGTGGAGAAACGATTGAAAGACTCTTCCACTTGGAAATCAAAAACA
ATTCCAAAAAGGTCGGAAGTGACTGGTAATGAAGTTTCATGCATATGCGT
TTGCTTATGTCGTTGTACGAGCTTTGAATTCGCT
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protein sequence of NO03G03110.4

>NO03G03110.4-protein ID=NO03G03110.4-protein|Name=NO03G03110.4|organism=Nannochloropsis oceanica|type=polypeptide|length=309bp
MRAVLPVMCLFLSYASAFMPTMPASALRATTTTSAWRRRTGVALTPMMTA
VDGGKLKVGIVGATGAVGEEIVKVLGNRQFPVSELHLYASARSAGKSVPT
PFGSVTIEEFELGNARGLDVIFLAVGGDFSLKYAHKLSEGDGPVVIDNSS
AFRMDPDVPLVVPEINHKTAKGKKLIANPNCTTAIGLMALFPLHVAYGIK
KVIMSTYQAASGAGAEGAWCWEGRGGKRGYIPIPLYILVVVGGDTWNMKA
GVMPPNHSHSGPSLPFSAHHPLPRHGRAQDGHRQLCQRPADQERVLRLPP
PLQRHSSH*
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mRNA from alignment at chr3:929187..932251+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO03G03110.4 ID=NO03G03110.4|Name=NO03G03110.4|organism=Nannochloropsis oceanica|type=mRNA|length=3065bp|location=Sequence derived from alignment at chr3:929187..932251+ (Nannochloropsis oceanica)
GCTCATTATTTTGCCTTTATACTGTGATGGCGGCTTTTGTAGCAATGCAG GATGGAAGGCCGCTCTGATTTTAAGTATCTTTTCCATCATCGCAGCAGCA GCACCATCAGCACCAGCCCAACATCATCCATCTATTACCCTATTTTGCCG GAAATGACCCCGCACATTTGTGTCCATCGTAGAGGTGGTACACAAATACC GCGCTCTATTCCCTTCGAATCTGCTGCGAACGATTTTAGCGCATTTTGCT CACCCACCTCACATTACACTCCCTCCCCCCAGGCCAGGCCACTGTCGCCG TCGCTGGTTCTTCGCCGCTGCTGCAACCACAGCCACAACGCCCCCTTGAA CCATGCGTGCGGTTCTACCTGTCATGTGCTTGTTTCTATCCTATGCTTCA GCCTTTATGCCGACTATGCCTGCCAGCGCGTTACGAGGTGAGTTCCTCGT TACCCGTCCTTTTCTCCCCTAAGTCCCTACTTTCAATACCTTGCCCTGTC CTTATTTCCCCGCTGCATCAACTTACACACACACGCCCACTTACACACTC TCCCCAAATACAGCCACCACCACCACCTCCGCATGGCGAAGGCGGACGGG AGTTGCGCTGACGCCCATGATGACCGCGGTTGACGGGGGTAAGCTCAAGG TAGGAATTGTGGGGGCGACGGGCGCAGTAGGAGAGGAGATTGTGAAGGTG CTGGGCAATCGGCAATTCCCCGTGTCTGAGCTTCATTTGTACGCCTCGGC GCGTTCCGCGGGTAAGAGCGTGCCGACGCCGTTTGGGTCTGTGACCATCG AGGAGTTTGAGCTCGGCAATGCGAGAGGATTGGACGTGATTTTCCTGGCG GTCGGTGGGGACTTCTCATTGAAGTACGCACACAAGCTCTCGGAGGGGGA CGGGCCTGTTGTAATCGACAATTCATCTGCTTTTCGAATGGATCCTGACG TCCCGCTGGTGGTGCCGGAGATCAACCACAAGACGGCAAAAGGGAAGAAA CTTATTGCCAACCCGAATTGTACGACGGCGATCGGGTTGATGGCTCTTTT CCCGCTGCATGTGGCCTATGGAATTAAAAAGGTGATTATGTCGACGTACC AGGCGGCGTCGGGTGCCGGGGCCGAAGGTGCGTGGTGTTGGGAGGGCAGA GGTGGAAAAAGAGGATATATACCGATACCCTTATATATTCTTGTTGTCGT TGGCGGCGACACATGGAACATGAAAGCGGGAGTTATGCCTCCTAATCACT CGCATTCAGGACCCTCCCTCCCCTTCTCCGCCCACCATCCCCTCCCCAGG CATGGACGAGCTCAAGACGGGCATCGCCAGCTTTGTCAAAGGCCAGCCGA TCAAGAACGAGTTCTTCGCCTACCCCCTCCCCTTCAACGTCATTCCTCAC ATTGACGTCTTCCAGGAAAATGGGTACACGAAGGAGGAGATGAAAGTCAC TTGGGAGGCACGCAAGATCTTGGGGGTTCCCGATTTGGCTGTTAGGTAGG GAGAGAAGGGGAGGAGGGGGGGAGGGGTTTGTGGTTTCGAAGCTCTGTGC GTGCGCTGTATTTTGCCTGTACCTCGTTTCTGCCTCCTCGGACGTTCGCA ATTGATATCACACGTACCCCTCCACTCTTCTTTGCCTTTTTTCTGGGCTG ACCCCTTCCATTCCTCAAGTTGCACTGCAGTCCGCATCCCCACCCTGCGG GCTCACTCAGAGGCCATTGTCATCGAGACCGAAAAGCCCGTCACGCCCGA AGGCGCCCGAGAGGTCCTTGGGAACTTTCCGGGACTCAAGGTGGTGGATG ACACAAGCACGAAGCAATACCCTATGCCCTTGACAGCCACCAACCACTAC GACGTGGAGGTGGGCCGCATTCGTCAGAACATCGTCTTTGGGGACCACGG CCTGGAGCTGTTTGTGTGTGGGGATCAGGTGCGTTTTCGAGGGAGGGAGG GAGGGAGGGAAGGAGGGGGTGGGAAAAGGGAGGGAGGGAGGATGGGAGAG AGGTGAGCATGGGAGGGAAGGAAGGAGGAAAGCATGGGCGCCATTTGCAA GCACAAACACACATACATACATACATACACACACACATATATATAATATA TATATATATATATATAATTGCATACATAGTGCTCATTTCCTGCCCGCAAA ATATATGCGCATGCACTTACATTTCTTTTACAGCTTTTACGCGGGGCTGC ATTAAATGCTGTGATAATTGCTGAGATGCTGTAGAGTGATGAGGAAAGAC GAGAGGGAAGGGTTATGGGGCGGGGAATATTGAGGTTTGACACAGACTAC ACAGAGTAAGGATATAAAACATTTGCAAAAGCACGCATAAGTGGCTGTAA AGACATTGCCCATCGTCGGAAAGAGGAAAACAGAACATCGTTAAAAAAAA AAAAAAAGAAGCACAAAGCGTTCTTACCTAATGCCCGGTTTGTCCCTATG GCTACACAAAACTGAAATGGTTCTGCTCCAACGAACCATAACTCATCGTA AATTTAGGTAAACGACGAAATTTGGCGTGGTCTGACCTTCGTTAGTATGA TCTGTGGCGTTTTTTTTTAGGATTGGCTTTTTATGAGGCGATGTGGTGCC CACGAGGAGGAAAAACAAGAGTGCAAAAGAGATGACTTACAGCCAGTCAA TGACACATGTTGTTACCACGATCGCATCTACTTTGAGGTGGACAAGAGAT TTGAATATGTGAAGGTCAGGAAGAAGGAAGAGAAGGGTCCCAGCGTGAAC AGGGTCGCAGGTGCGGGTGCTTGTTCTTCCTACATTCAAGCCAAAAATCA ATCAAAAAAGACTAGATATCGAGACAAAAGACTACAGACTTCCAATTTAT ACTGGGTAAAGATCATTCACAGGTCTTTGAAAGCCATGTTCACTCCTCCA TAGGAGGGCGACAGGAGAGAGGCAAGAGGGAGAGGGGTGGAGAAACGATT GAAAGACTCTTCCACTTGGAAATCAAAAACAATTCCAAAAAGGTCGGAAG TGACTGGTAATGAAGTTTCATGCATATGCGTTTGCTTATGTCGTTGTACG AGCTTTGAATTCGCT
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Coding sequence (CDS) from alignment at chr3:929187..932251+

>NO03G03110.4 ID=NO03G03110.4|Name=NO03G03110.4|organism=Nannochloropsis oceanica|type=CDS|length=927bp|location=Sequence derived from alignment at chr3:929187..932251+ (Nannochloropsis oceanica)
ATGCGTGCGGTTCTACCTGTCATGTGCTTGTTTCTATCCTATGCTTCAGC
CTTTATGCCGACTATGCCTGCCAGCGCGTTACGAGCCACCACCACCACCT
CCGCATGGCGAAGGCGGACGGGAGTTGCGCTGACGCCCATGATGACCGCG
GTTGACGGGGGTAAGCTCAAGGTAGGAATTGTGGGGGCGACGGGCGCAGT
AGGAGAGGAGATTGTGAAGGTGCTGGGCAATCGGCAATTCCCCGTGTCTG
AGCTTCATTTGTACGCCTCGGCGCGTTCCGCGGGTAAGAGCGTGCCGACG
CCGTTTGGGTCTGTGACCATCGAGGAGTTTGAGCTCGGCAATGCGAGAGG
ATTGGACGTGATTTTCCTGGCGGTCGGTGGGGACTTCTCATTGAAGTACG
CACACAAGCTCTCGGAGGGGGACGGGCCTGTTGTAATCGACAATTCATCT
GCTTTTCGAATGGATCCTGACGTCCCGCTGGTGGTGCCGGAGATCAACCA
CAAGACGGCAAAAGGGAAGAAACTTATTGCCAACCCGAATTGTACGACGG
CGATCGGGTTGATGGCTCTTTTCCCGCTGCATGTGGCCTATGGAATTAAA
AAGGTGATTATGTCGACGTACCAGGCGGCGTCGGGTGCCGGGGCCGAAGG
TGCGTGGTGTTGGGAGGGCAGAGGTGGAAAAAGAGGATATATACCGATAC
CCTTATATATTCTTGTTGTCGTTGGCGGCGACACATGGAACATGAAAGCG
GGAGTTATGCCTCCTAATCACTCGCATTCAGGACCCTCCCTCCCCTTCTC
CGCCCACCATCCCCTCCCCAGGCATGGACGAGCTCAAGACGGGCATCGCC
AGCTTTGTCAAAGGCCAGCCGATCAAGAACGAGTTCTTCGCCTACCCCCT
CCCCTTCAACGTCATTCCTCACATTGA
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Synonyms
Publications