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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr3 | genome | chr3:929187..932251 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO03G03110.4 vs.
Match: EWM29755.1 (aspartate-semialdehyde dehydrogenase [Nannochloropsis gaditana]) HSP 1 Score: 320.9 bits (821), Expect = 4.500e-84 Identity = 171/217 (78.80%), Postives = 183/217 (84.33%), Query Frame = 0
Query: 1 MRAVLPVMCLFLSYASAFMPTMPASALRATTTTSAWRRRTGVALTPMMTAVDGGKLKVGIVGATGAVGEEIVKVLGNRQFPVSELHLYASARSAGKSVPTPFGSVTIEEFELGNARGLDVIFLAVGGDFSLKYAHKLSEGDGPVVIDNSSAFRMDPDVPLVVPEINHKTAKGKKLIANPNCTTAIGLMALFPLHVAYGIKKVIMSTYQAASGAGAEG 218
MRA++ V L++ A AFMPT SA RA TSA RRR G LTPMM G LKVGIVGATGAVGEEIVKVLG+R FPVSELHLYASARSAGKSV TPFGSV+IEEF+L ARGLDVIFLAVGGDFS +YA KLS DGPVVIDNSSAFR+DP VPL+VPEIN + AKGKKLIANPNCTTAIGLMALFPLHVA+GIKKVIMSTYQAASGAGAEG
Sbjct: 39 MRALIAVFSLYICSAMAFMPTTLPSASRACVRTSAGRRRAGTRLTPMMAVDQGSTLKVGIVGATGAVGEEIVKVLGHRNFPVSELHLYASARSAGKSVATPFGSVSIEEFDLDKARGLDVIFLAVGGDFSKEYAIKLSATDGPVVIDNSSAFRLDPSVPLIVPEINQQAAKGKKLIANPNCTTAIGLMALFPLHVAFGIKKVIMSTYQAASGAGAEG 255
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO03G03110.4 ID=NO03G03110.4|Name=NO03G03110.4|organism=Nannochloropsis oceanica|type=mRNA|length=2684bp GCTCATTATTTTGCCTTTATACTGTGATGGCGGCTTTTGTAGCAATGCAG GATGGAAGGCCGCTCTGATTTTAAGTATCTTTTCCATCATCGCAGCAGCA GCACCATCAGCACCAGCCCAACATCATCCATCTATTACCCTATTTTGCCG GAAATGACCCCGCACATTTGTGTCCATCGTAGAGGTGGTACACAAATACC GCGCTCTATTCCCTTCGAATCTGCTGCGAACGATTTTAGCGCATTTTGCT CACCCACCTCACATTACACTCCCTCCCCCCAGGCCAGGCCACTGTCGCCG TCGCTGGTTCTTCGCCGCTGCTGCAACCACAGCCACAACGCCCCCTTGAA CCATGCGTGCGGTTCTACCTGTCATGTGCTTGTTTCTATCCTATGCTTCA GCCTTTATGCCGACTATGCCTGCCAGCGCGTTACGAGCCACCACCACCAC CTCCGCATGGCGAAGGCGGACGGGAGTTGCGCTGACGCCCATGATGACCG CGGTTGACGGGGGTAAGCTCAAGGTAGGAATTGTGGGGGCGACGGGCGCA GTAGGAGAGGAGATTGTGAAGGTGCTGGGCAATCGGCAATTCCCCGTGTC TGAGCTTCATTTGTACGCCTCGGCGCGTTCCGCGGGTAAGAGCGTGCCGA CGCCGTTTGGGTCTGTGACCATCGAGGAGTTTGAGCTCGGCAATGCGAGA GGATTGGACGTGATTTTCCTGGCGGTCGGTGGGGACTTCTCATTGAAGTA CGCACACAAGCTCTCGGAGGGGGACGGGCCTGTTGTAATCGACAATTCAT CTGCTTTTCGAATGGATCCTGACGTCCCGCTGGTGGTGCCGGAGATCAAC CACAAGACGGCAAAAGGGAAGAAACTTATTGCCAACCCGAATTGTACGAC GGCGATCGGGTTGATGGCTCTTTTCCCGCTGCATGTGGCCTATGGAATTA AAAAGGTGATTATGTCGACGTACCAGGCGGCGTCGGGTGCCGGGGCCGAA GGTGCGTGGTGTTGGGAGGGCAGAGGTGGAAAAAGAGGATATATACCGAT ACCCTTATATATTCTTGTTGTCGTTGGCGGCGACACATGGAACATGAAAG CGGGAGTTATGCCTCCTAATCACTCGCATTCAGGACCCTCCCTCCCCTTC TCCGCCCACCATCCCCTCCCCAGGCATGGACGAGCTCAAGACGGGCATCG CCAGCTTTGTCAAAGGCCAGCCGATCAAGAACGAGTTCTTCGCCTACCCC CTCCCCTTCAACGTCATTCCTCACATTGACGTCTTCCAGGAAAATGGGTA CACGAAGGAGGAGATGAAAGTCACTTGGGAGGCACGCAAGATCTTGGGGG TTCCCGATTTGGCTGTTAGGTAGGGAGAGAAGGGGAGGAGGGGGGGAGGG GTTTGTGGTTTCGAAGCTCTGTGCGTGCGCTGTATTTTGCCTGTACCTCG TTTCTGCCTCCTCGGACGTTCGCAATTGATATCACACGTACCCCTCCACT CTTCTTTGCCTTTTTTCTGGGCTGACCCCTTCCATTCCTCAAGTTGCACT GCAGTCCGCATCCCCACCCTGCGGGCTCACTCAGAGGCCATTGTCATCGA GACCGAAAAGCCCGTCACGCCCGAAGGCGCCCGAGAGGTCCTTGGGAACT TTCCGGGACTCAAGGTGGTGGATGACACAAGCACGAAGCAATACCCTATG CCCTTGACAGCCACCAACCACTACGACGTGGAGGTGGGCCGCATTCGTCA GAACATCGTCTTTGGGGACCACGGCCTGGAGCTGTTTGTGTGTGGGGATC AGCTTTTACGCGGGGCTGCATTAAATGCTGTGATAATTGCTGAGATGCTG TAGAGTGATGAGGAAAGACGAGAGGGAAGGGTTATGGGGCGGGGAATATT GAGGTTTGACACAGACTACACAGAGTAAGGATATAAAACATTTGCAAAAG CACGCATAAGTGGCTGTAAAGACATTGCCCATCGTCGGAAAGAGGAAAAC AGAACATCGTTAAAAAAAAAAAAAAAGAAGCACAAAGCGTTCTTACCTAA TGCCCGGTTTGTCCCTATGGCTACACAAAACTGAAATGGTTCTGCTCCAA CGAACCATAACTCATCGTAAATTTAGGTAAACGACGAAATTTGGCGTGGT CTGACCTTCGTTAGTATGATCTGTGGCGTTTTTTTTTAGGATTGGCTTTT TATGAGGCGATGTGGTGCCCACGAGGAGGAAAAACAAGAGTGCAAAAGAG ATGACTTACAGCCAGTCAATGACACATGTTGTTACCACGATCGCATCTAC TTTGAGGTGGACAAGAGATTTGAATATGTGAAGGTCAGGAAGAAGGAAGA GAAGGGTCCCAGCGTGAACAGGGTCGCAGGTGCGGGTGCTTGTTCTTCCT ACATTCAAGCCAAAAATCAATCAAAAAAGACTAGATATCGAGACAAAAGA CTACAGACTTCCAATTTATACTGGGTAAAGATCATTCACAGGTCTTTGAA AGCCATGTTCACTCCTCCATAGGAGGGCGACAGGAGAGAGGCAAGAGGGA GAGGGGTGGAGAAACGATTGAAAGACTCTTCCACTTGGAAATCAAAAACA ATTCCAAAAAGGTCGGAAGTGACTGGTAATGAAGTTTCATGCATATGCGT TTGCTTATGTCGTTGTACGAGCTTTGAATTCGCT back to topprotein sequence of NO03G03110.4 >NO03G03110.4-protein ID=NO03G03110.4-protein|Name=NO03G03110.4|organism=Nannochloropsis oceanica|type=polypeptide|length=309bp MRAVLPVMCLFLSYASAFMPTMPASALRATTTTSAWRRRTGVALTPMMTA VDGGKLKVGIVGATGAVGEEIVKVLGNRQFPVSELHLYASARSAGKSVPT PFGSVTIEEFELGNARGLDVIFLAVGGDFSLKYAHKLSEGDGPVVIDNSS AFRMDPDVPLVVPEINHKTAKGKKLIANPNCTTAIGLMALFPLHVAYGIK KVIMSTYQAASGAGAEGAWCWEGRGGKRGYIPIPLYILVVVGGDTWNMKA GVMPPNHSHSGPSLPFSAHHPLPRHGRAQDGHRQLCQRPADQERVLRLPP PLQRHSSH* back to topmRNA from alignment at chr3:929187..932251+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO03G03110.4 ID=NO03G03110.4|Name=NO03G03110.4|organism=Nannochloropsis oceanica|type=mRNA|length=3065bp|location=Sequence derived from alignment at chr3:929187..932251+ (Nannochloropsis oceanica) GCTCATTATTTTGCCTTTATACTGTGATGGCGGCTTTTGTAGCAATGCAG
GATGGAAGGCCGCTCTGATTTTAAGTATCTTTTCCATCATCGCAGCAGCA
GCACCATCAGCACCAGCCCAACATCATCCATCTATTACCCTATTTTGCCG
GAAATGACCCCGCACATTTGTGTCCATCGTAGAGGTGGTACACAAATACC
GCGCTCTATTCCCTTCGAATCTGCTGCGAACGATTTTAGCGCATTTTGCT
CACCCACCTCACATTACACTCCCTCCCCCCAGGCCAGGCCACTGTCGCCG
TCGCTGGTTCTTCGCCGCTGCTGCAACCACAGCCACAACGCCCCCTTGAA
CCATGCGTGCGGTTCTACCTGTCATGTGCTTGTTTCTATCCTATGCTTCA
GCCTTTATGCCGACTATGCCTGCCAGCGCGTTACGAGGTGAGTTCCTCGT
TACCCGTCCTTTTCTCCCCTAAGTCCCTACTTTCAATACCTTGCCCTGTC
CTTATTTCCCCGCTGCATCAACTTACACACACACGCCCACTTACACACTC
TCCCCAAATACAGCCACCACCACCACCTCCGCATGGCGAAGGCGGACGGG
AGTTGCGCTGACGCCCATGATGACCGCGGTTGACGGGGGTAAGCTCAAGG
TAGGAATTGTGGGGGCGACGGGCGCAGTAGGAGAGGAGATTGTGAAGGTG
CTGGGCAATCGGCAATTCCCCGTGTCTGAGCTTCATTTGTACGCCTCGGC
GCGTTCCGCGGGTAAGAGCGTGCCGACGCCGTTTGGGTCTGTGACCATCG
AGGAGTTTGAGCTCGGCAATGCGAGAGGATTGGACGTGATTTTCCTGGCG
GTCGGTGGGGACTTCTCATTGAAGTACGCACACAAGCTCTCGGAGGGGGA
CGGGCCTGTTGTAATCGACAATTCATCTGCTTTTCGAATGGATCCTGACG
TCCCGCTGGTGGTGCCGGAGATCAACCACAAGACGGCAAAAGGGAAGAAA
CTTATTGCCAACCCGAATTGTACGACGGCGATCGGGTTGATGGCTCTTTT
CCCGCTGCATGTGGCCTATGGAATTAAAAAGGTGATTATGTCGACGTACC
AGGCGGCGTCGGGTGCCGGGGCCGAAGGTGCGTGGTGTTGGGAGGGCAGA
GGTGGAAAAAGAGGATATATACCGATACCCTTATATATTCTTGTTGTCGT
TGGCGGCGACACATGGAACATGAAAGCGGGAGTTATGCCTCCTAATCACT
CGCATTCAGGACCCTCCCTCCCCTTCTCCGCCCACCATCCCCTCCCCAGG
CATGGACGAGCTCAAGACGGGCATCGCCAGCTTTGTCAAAGGCCAGCCGA
TCAAGAACGAGTTCTTCGCCTACCCCCTCCCCTTCAACGTCATTCCTCAC
ATTGACGTCTTCCAGGAAAATGGGTACACGAAGGAGGAGATGAAAGTCAC
TTGGGAGGCACGCAAGATCTTGGGGGTTCCCGATTTGGCTGTTAGGTAGG
GAGAGAAGGGGAGGAGGGGGGGAGGGGTTTGTGGTTTCGAAGCTCTGTGC
GTGCGCTGTATTTTGCCTGTACCTCGTTTCTGCCTCCTCGGACGTTCGCA
ATTGATATCACACGTACCCCTCCACTCTTCTTTGCCTTTTTTCTGGGCTG
ACCCCTTCCATTCCTCAAGTTGCACTGCAGTCCGCATCCCCACCCTGCGG
GCTCACTCAGAGGCCATTGTCATCGAGACCGAAAAGCCCGTCACGCCCGA
AGGCGCCCGAGAGGTCCTTGGGAACTTTCCGGGACTCAAGGTGGTGGATG
ACACAAGCACGAAGCAATACCCTATGCCCTTGACAGCCACCAACCACTAC
GACGTGGAGGTGGGCCGCATTCGTCAGAACATCGTCTTTGGGGACCACGG
CCTGGAGCTGTTTGTGTGTGGGGATCAGGTGCGTTTTCGAGGGAGGGAGG
GAGGGAGGGAAGGAGGGGGTGGGAAAAGGGAGGGAGGGAGGATGGGAGAG
AGGTGAGCATGGGAGGGAAGGAAGGAGGAAAGCATGGGCGCCATTTGCAA
GCACAAACACACATACATACATACATACACACACACATATATATAATATA
TATATATATATATATAATTGCATACATAGTGCTCATTTCCTGCCCGCAAA
ATATATGCGCATGCACTTACATTTCTTTTACAGCTTTTACGCGGGGCTGC
ATTAAATGCTGTGATAATTGCTGAGATGCTGTAGAGTGATGAGGAAAGAC
GAGAGGGAAGGGTTATGGGGCGGGGAATATTGAGGTTTGACACAGACTAC
ACAGAGTAAGGATATAAAACATTTGCAAAAGCACGCATAAGTGGCTGTAA
AGACATTGCCCATCGTCGGAAAGAGGAAAACAGAACATCGTTAAAAAAAA
AAAAAAAGAAGCACAAAGCGTTCTTACCTAATGCCCGGTTTGTCCCTATG
GCTACACAAAACTGAAATGGTTCTGCTCCAACGAACCATAACTCATCGTA
AATTTAGGTAAACGACGAAATTTGGCGTGGTCTGACCTTCGTTAGTATGA
TCTGTGGCGTTTTTTTTTAGGATTGGCTTTTTATGAGGCGATGTGGTGCC
CACGAGGAGGAAAAACAAGAGTGCAAAAGAGATGACTTACAGCCAGTCAA
TGACACATGTTGTTACCACGATCGCATCTACTTTGAGGTGGACAAGAGAT
TTGAATATGTGAAGGTCAGGAAGAAGGAAGAGAAGGGTCCCAGCGTGAAC
AGGGTCGCAGGTGCGGGTGCTTGTTCTTCCTACATTCAAGCCAAAAATCA
ATCAAAAAAGACTAGATATCGAGACAAAAGACTACAGACTTCCAATTTAT
ACTGGGTAAAGATCATTCACAGGTCTTTGAAAGCCATGTTCACTCCTCCA
TAGGAGGGCGACAGGAGAGAGGCAAGAGGGAGAGGGGTGGAGAAACGATT
GAAAGACTCTTCCACTTGGAAATCAAAAACAATTCCAAAAAGGTCGGAAG
TGACTGGTAATGAAGTTTCATGCATATGCGTTTGCTTATGTCGTTGTACG
AGCTTTGAATTCGCT back to topCoding sequence (CDS) from alignment at chr3:929187..932251+ >NO03G03110.4 ID=NO03G03110.4|Name=NO03G03110.4|organism=Nannochloropsis oceanica|type=CDS|length=927bp|location=Sequence derived from alignment at chr3:929187..932251+ (Nannochloropsis oceanica) ATGCGTGCGGTTCTACCTGTCATGTGCTTGTTTCTATCCTATGCTTCAGC CTTTATGCCGACTATGCCTGCCAGCGCGTTACGAGCCACCACCACCACCT CCGCATGGCGAAGGCGGACGGGAGTTGCGCTGACGCCCATGATGACCGCG GTTGACGGGGGTAAGCTCAAGGTAGGAATTGTGGGGGCGACGGGCGCAGT AGGAGAGGAGATTGTGAAGGTGCTGGGCAATCGGCAATTCCCCGTGTCTG AGCTTCATTTGTACGCCTCGGCGCGTTCCGCGGGTAAGAGCGTGCCGACG CCGTTTGGGTCTGTGACCATCGAGGAGTTTGAGCTCGGCAATGCGAGAGG ATTGGACGTGATTTTCCTGGCGGTCGGTGGGGACTTCTCATTGAAGTACG CACACAAGCTCTCGGAGGGGGACGGGCCTGTTGTAATCGACAATTCATCT GCTTTTCGAATGGATCCTGACGTCCCGCTGGTGGTGCCGGAGATCAACCA CAAGACGGCAAAAGGGAAGAAACTTATTGCCAACCCGAATTGTACGACGG CGATCGGGTTGATGGCTCTTTTCCCGCTGCATGTGGCCTATGGAATTAAA AAGGTGATTATGTCGACGTACCAGGCGGCGTCGGGTGCCGGGGCCGAAGG TGCGTGGTGTTGGGAGGGCAGAGGTGGAAAAAGAGGATATATACCGATAC CCTTATATATTCTTGTTGTCGTTGGCGGCGACACATGGAACATGAAAGCG GGAGTTATGCCTCCTAATCACTCGCATTCAGGACCCTCCCTCCCCTTCTC CGCCCACCATCCCCTCCCCAGGCATGGACGAGCTCAAGACGGGCATCGCC AGCTTTGTCAAAGGCCAGCCGATCAAGAACGAGTTCTTCGCCTACCCCCT CCCCTTCAACGTCATTCCTCACATTGA back to top
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