NO03G03070.1, NO03G03070.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO03G03070.1
Unique NameNO03G03070.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2270
Alignment locationchr3:919359..922564 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:919359..922564 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO03G03070.1 vs.
Match: EWM29732.1 (enolase [Nannochloropsis gaditana])

HSP 1 Score: 823.5 bits (2126), Expect = 3.300e-235
Identity = 419/480 (87.29%), Postives = 443/480 (92.29%), Query Frame = 0 
Query:   10 FLSLSMRTATALCFLLGSLSYSSAFVAPSAPNT----RARHTVSMAIKKIHAREIIDSRGNPTVEVDVTTDKGIFTASVPSGASTGVYEACELRDGGARYMGKGVLTAVKNVNDIIAPALVGKDETDQAALDQAMIDLDGTENKSKLGANAILGVSLAVAKAGAANKGLPLYKYFGALAGNTKFVLPVPAFNVINGGSHAGNKLAFQEFMILPTGASSFKEAMQIGAEVYHNLKGVIKKKYGQDATNVGDEGGFAPNIQSNKEGVELLMDAIHKSGYADKVVIGMDVASSEFRTKDDKYDLDFKSKDNDGSEKITGVQLGDFYKELARDFPIVSIEDPFDQDDWDSWIKFTTGVTKDLQVVGDDLTVTNPKKIQEAAEKGAANALLLKVNQIGSVTESIAAVKLAKQNGWGVMTSHRSGETEDHYIADLAVGLCTGQIKTGAPCRSERLAKYNQLLRIEEELGAGAEYAGKSYRKPAWMG 486
            F  LSMRT++ALC LLGSLSYSS+F+ PS  ++    R RH VSM IK IHAREIIDSRGNPTVEVDVTT+KG+F ASVPSGASTG+YEACELRDGG+R+MGKGVLTAV NVN IIAP LVG+DET Q ALDQAMIDLDGTENKSKLGANAILGVSLAVAKAGAA KG+PLYKYFG LAGNT FVLPVPAFNVINGGSHAGNKLAFQEFMILPTGASSFKEAMQIGAEVYHNLK VIKKKYGQDATNVGDEGGFAPNIQ+NKEGVELLMDAI  +GY DKVVIGMDVASSEFRTKDD YDLDFK+KDNDGS KITG QLG+FYKELAR+FPIVSIEDPFDQDDWDSW+KF T VTK+LQVVGDDLTVTNPKKIQEAA+K AANALLLKVNQIGSVTESIAAVKLAK+NGWG+MTSHRSGETED+YIADLAVGLC GQIKTGAPCRSERLAKYNQLLRIEEELGA A YAGKSYRKP WMG
Sbjct:   17 FQFLSMRTSSALCLLLGSLSYSSSFLTPSPLSSKVTARTRHIVSMTIKNIHAREIIDSRGNPTVEVDVTTEKGLFKASVPSGASTGIYEACELRDGGSRFMGKGVLTAVNNVNTIIAPKLVGQDETQQNALDQAMIDLDGTENKSKLGANAILGVSLAVAKAGAAAKGMPLYKYFGLLAGNTHFVLPVPAFNVINGGSHAGNKLAFQEFMILPTGASSFKEAMQIGAEVYHNLKSVIKKKYGQDATNVGDEGGFAPNIQNNKEGVELLMDAIKNAGYLDKVVIGMDVASSEFRTKDDMYDLDFKTKDNDGSSKITGEQLGEFYKELAREFPIVSIEDPFDQDDWDSWVKFNTAVTKELQVVGDDLTVTNPKKIQEAADKSAANALLLKVNQIGSVTESIAAVKLAKKNGWGIMTSHRSGETEDNYIADLAVGLCAGQIKTGAPCRSERLAKYNQLLRIEEELGADAVYAGKSYRKPVWMG 496
The following BLAST results are available for this feature:
BLAST of NO03G03070.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29732.13.300e-23587.29enolase [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO03G03070NO03G03070Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO03G03070.1NO03G03070.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO03G03070.1.cds1NO03G03070.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO03G03070.1.cds2NO03G03070.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO03G03070.1.cds3NO03G03070.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO03G03070.1.cds4NO03G03070.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO03G03070.1.cds5NO03G03070.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO03G03070.1.cds6NO03G03070.1.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO03G03070.1.cds7NO03G03070.1.cds7Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO03G03070.1 ID=NO03G03070.1|Name=NO03G03070.1|organism=Nannochloropsis oceanica|type=mRNA|length=2270bp
TCTTCATCACTCTGTCTCTGACATCTCGTGGCCTTATACACATAGCCTTA
TAGATTTTGCTCTTTTGATCCTTGTTAAGCCACTCTCTCCGAGAGACCTT
CATGGCACACACTTGATTCCACGTAGGCCATGCGCCTTGTCGCCTTGATG
CTGCAACCGAAACAACGGTTTTGATCCCACAGCCCTTCCTCCCGTGAAGA
TCACAAGCGTGTCGCGTCGCCCTAGTGCTGGTATGCCCGTCGGCTTATAA
CCCATGCGCCCCATTTCCAAACATAGATCCTTTTTGTCCCTCTCAATGAG
GACTGCGACTGCTCTGTGCTTCCTGCTGGGGTCTCTCTCCTACTCGTCCG
CTTTCGTCGCCCCGTCGGCACCCAACACCCGCGCCCGCCACACAGTCTCC
ATGGCTATTAAGAAGATTCACGCCCGCGAGATCATTGACTCCCGCGGAAA
CCCCACCGTGGAGGTGGATGTCACCACCGACAAGGGCATCTTCACGGCTT
CGGTTCCTTCCGGCGCCTCCACGGGAGTGTACGAGGCATGCGAGCTGCGC
GATGGAGGTGCCCGCTACATGGGCAAGGGCGTGCTTACCGCGGTCAAGAA
CGTGAACGACATTATCGCCCCCGCCCTGGTGGGGAAGGATGAGACGGATC
AAGCTGCCTTGGACCAAGCCATGATTGACTTGGATGGGACGGAAAACAAG
AGCAAACTCGGCGCGAACGCCATTCTTGGTGTCTCTCTGGCGGTGGCAAA
GGCCGGTGCCGCCAATAAGGGCCTCCCGCTCTACAAGTACTTTGGGGCGC
TTGCGGGGAACACGAAGTTTGTCTTACCTGTGCCTGCATTCAATGTGATC
AATGGTGGAAGCCACGCCGGGAATAAGCTTGCGTTTCAGGAGTTTATGAT
TTTGCCGACGGGCGCGTCGTCGTTTAAGGAGGCGATGCAAATTGGTGCCG
AAGTGTACCACAACCTGAAAGGGGTCATCAAGAAGAAGTACGGGCAGGAT
GCGACCAACGTGGGAGATGAAGGGGGGTTTGCCCCGAACATTCAAAGTAA
CAAGGAAGGGGTGGAGCTGTTGATGGATGCGATCCACAAGAGTGGGTATG
CGGATAAGGTTGTGATCGGCATGGATGTGGCCAGTTCTGAATTTAGGACC
AAGGATGATAAATACGACTTGGACTTCAAGAGCAAGGACAACGACGGGAG
TGAGAAGATCACGGGCGTGCAGCTGGGTGACTTCTACAAGGAGCTGGCCC
GGGACTTCCCCATTGTTTCCATCGAGGATCCCTTTGATCAGGATGACTGG
GACAGTTGGATCAAGTTCACGACGGGCGTGACGAAAGACCTGCAGGTGGT
GGGCGACGACTTGACCGTTACCAACCCGAAGAAGATCCAAGAGGCCGCCG
AGAAGGGCGCCGCTAACGCCTTGCTCCTGAAGGTGAATCAGATCGGTTCC
GTCACCGAGTCCATCGCCGCCGTCAAGCTGGCCAAGCAAAATGGGTGGGG
AGTCATGACCTCCCATCGCTCGGGCGAGACTGAGGACCACTACATTGCTG
ATTTAGCCGTGGGTTTGTGCACGGGGCAGATCAAGACGGGCGCGCCTTGC
CGATCTGAGCGCTTGGCGAAGTATAACCAGCTCCTGCGAATTGAGGAGGA
GCTGGGCGCGGGTGCTGAGTATGCGGGCAAATCTTATCGTAAGCCGGCCT
GGATGGGGAACTAAGAGTCACGTGTTTGTTGGAGGGAGGAAGAGTATGAG
AGAAGAAGGAAGAGGAATGTGGAAGATGAGCTTTTGTGTGGTGGTTTTAT
GCGCGAAGTTTGTGATGTGTGTCCGTGGCTATTTCTGTGTGGGTTTCTTT
TATTTGTTGTCTATATCTGACAACGGTTTCAGTTAATTAAGCTCCGAGCG
CTGCAAACCGACAGTCGGCAGCAATCAAAACGTGGCGACATATAGCAAAA
GCGGCAGCGAAATCGGTAGTATTCTAGGTCAGGAAAATGTGAGTTGAAAA
GGAAGACAGACGTCCAGCCGAGATAGTGGAGAGCAAGGGGTATGTAGGCT
CGGATAAATGTCAGACAACGAAGATCCTGTCACATTCAGGAAGGTAGTTG
AAACTAATTTCTAGCATTTTTGGGAGAGACGAAGAAGAAGAAATGAGGGT
CAAGGAGAACAAGAGGAAGAGAAATGAAGGTGGGTCTCCATCCTTTGGAA
GAATTTTCGCGTTTCAGGGAGAAAGAAAAGAAGGAAGAGGCAAGCGAAGA
GCTTCAGCGGTAGTGACGGT
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protein sequence of NO03G03070.1

>NO03G03070.1-protein ID=NO03G03070.1-protein|Name=NO03G03070.1|organism=Nannochloropsis oceanica|type=polypeptide|length=487bp
MRPISKHRSFLSLSMRTATALCFLLGSLSYSSAFVAPSAPNTRARHTVSM
AIKKIHAREIIDSRGNPTVEVDVTTDKGIFTASVPSGASTGVYEACELRD
GGARYMGKGVLTAVKNVNDIIAPALVGKDETDQAALDQAMIDLDGTENKS
KLGANAILGVSLAVAKAGAANKGLPLYKYFGALAGNTKFVLPVPAFNVIN
GGSHAGNKLAFQEFMILPTGASSFKEAMQIGAEVYHNLKGVIKKKYGQDA
TNVGDEGGFAPNIQSNKEGVELLMDAIHKSGYADKVVIGMDVASSEFRTK
DDKYDLDFKSKDNDGSEKITGVQLGDFYKELARDFPIVSIEDPFDQDDWD
SWIKFTTGVTKDLQVVGDDLTVTNPKKIQEAAEKGAANALLLKVNQIGSV
TESIAAVKLAKQNGWGVMTSHRSGETEDHYIADLAVGLCTGQIKTGAPCR
SERLAKYNQLLRIEEELGAGAEYAGKSYRKPAWMGN*
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mRNA from alignment at chr3:919359..922564-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO03G03070.1 ID=NO03G03070.1|Name=NO03G03070.1|organism=Nannochloropsis oceanica|type=mRNA|length=3206bp|location=Sequence derived from alignment at chr3:919359..922564- (Nannochloropsis oceanica)
TCTTCATCACTCTGTCTCTGACATCTCGTGGCCTTATACACATAGCCTTA
TAGATTTTGCTCTTTTGATCCTTGTTAAGCCACTCTCTCCGAGAGACCTT
CATGGCACACACTTGATTCCACGTAGGCCATGCGCCTTGTCGCCTTGATG
CTGCAACCGAAACAACGGTTTTGATCCCACAGCCCTTCCTCCCGTGAAGA
TCACAAGCGTGTCGCGTCGCCCTAGTGCTGGTATGCCCGTCGGCTTATAA
CCCATGCGCCCCATTTCCAAACATAGATCCTTTTTGTCCCTCTCAATGAG
GACTGCGACTGCTCTGTGCTTCCTGCTGGGGTCTCTCTCCTACTCGTCCG
GTACGTCCGACGTTATTGGCCTGTGAAACAAGAGCAAGAACCTTCGCGAA
ATGCCTGTCTGTGCTTTGGAAAGGGTTATGTGTCGTAGGGCAGCGCATCT
GTTGTTTCCTTCACATGCCTCTCCATGCGCAATACTGATACCCATCAGCG
CGAGACATGCGCGTTTCAACTTCTTGGCTCATGTCCGTGCTTTCCCTCCC
CACCACATTGCTCTTCCCCACAGCTTTCGTCGCCCCGTCGGCACCCAACA
CCCGCGCCCGCCACACAGTCTCCATGGTACGTTTAACGATGATTAATTAC
GTAACATCTTATTGTGACTGGGGCTCAACTTGCTGAGTCCACTCTCTCGT
CTATCCCCCCGCTGCAATGCAGGCTATTAAGAAGATTCACGCCCGCGAGA
TCATTGACTCCCGCGGAAACCCCACCGTGGAGGTGGATGTCACCACCGAC
AAGGGCATCTTCACGGCTTCGGTTCCTTCCGGCGCCTCCACGGGAGTGTA
CGAGGTATGTCCACCCACCATGGCCACGTGACCACATGGGTCACTTTTCA
GCGGGACTGGCGTGTCTTCGTCGATCTATATTCATTTTCCTCATTCTTGG
TGTGCGTCTGCGCTCGCTTGATCTCTCCGTCGCTCACTCCAACACTATTC
ATCTCCTTATTTTCTTCTAACTTGCCCTCTTCCACTACCATCCTCCTTCT
AGGCATGCGAGCTGCGCGATGGAGGTGCCCGCTACATGGGCAAGGGCGTG
CTTACCGCGGTCAAGAACGTGAACGACATTATCGCCCCCGCCCTGGTGGG
GAAGGATGAGACGGATCAAGCTGCCTTGGACCAAGCCATGATTGACTTGG
ATGGGACGGAAAACAAGAGCAAACTCGGCGCGAACGCCATTCTTGGTGTC
TCTCTGGCGGTGGCAAAGGCCGGTGCCGCCAATAAGGGCCTCCCGCTCTA
CAAGTACTTTGGGGCGCTTGCGGGGAACACGAAGTTTGTCTTACCTGTGC
CTGCATTCAATGTGATCAATGGTGGAAGCCACGCCGGGAATAAGCTTGCG
TTTCAGGAGTTTATGATTTTGCCGACGGGCGCGTCGTCGTTTAAGGAGGC
GATGCAAATTGGTGCCGAAGTGTACCACAACCTGAAAGGGGTCATCAAGA
AGAAGTACGGGCAGGATGCGACCAACGTGGGAGATGAAGGGGGGTTTGCC
CCGAACATTCAAAGTAACAAGGAAGGGGTGGAGCTGTTGATGGATGCGAT
CCACAAGAGTGGGTATGCGGATAAGGTTGTGATCGGCATGGATGTGGCCA
GTTCTGAATTTAGGACCAAGGATGATAAATACGACTTGGACTTCAAGGTG
CGTATTTCACGTCTACAGAACGCCATGTGTCATTGCGTTCGTTTCTAGTT
TAACCTCAGACTTCCTTCGCAACACAACAGAGCAAGGACAACGACGGGAG
TGAGAAGATCACGGGCGTGCAGCTGGGTGACTTCTACAAGGAGCTGGCCC
GGGACTTCCCCATTGTTTCCATCGAGGATCCCTTTGATCAGGTACATTCG
GCAAGATTTTTGAAGGCGTTCTTGTGTGTATGTGGTTGAGTTTGTGTCAG
CTGGCTTTGCTAGTGTGCTAGTGTCCCTCTCTCTTGACGCGGCGTCGGCA
CTTTCTATTTACTGATTTAAACCCCCCCTACGCCCCTTATCTTTCTTATC
TTAGGATGACTGGGACAGTTGGATCAAGTTCACGACGGGCGTGACGAAAG
ACCTGCAGGTGGTGGGCGACGACTTGACCGTTACCAACCCGAAGAAGATC
CAAGAGGCCGCCGAGAAGGGGTAAGTCTCAAACATGCATACTTCAAGCGA
CCAGAACGGATGTGTTGAATGAAATTTTGAATGATATGGTGGCTCAGAGC
TATCGATCTTGTCTGGACGCAGGGAGAGGCTACTGGCAAATGAATCAGTC
CTACCACTCACAAACTCTTCGCACCACCCTTCTGCCCACACAGCGCCGCT
AACGCCTTGCTCCTGAAGGTGAATCAGATCGGTTCCGTCACCGAGTCCAT
CGCCGCCGTCAAGCTGGCCAAGCAAAATGGGTGGGGAGTCATGACCTCCC
ATCGCTCGGGCGAGACTGAGGACCACTACATTGCTGATTTAGCCGTGGGT
TTGTGCACGGGGCAGATCAAGACGGGCGCGCCTTGCCGATCTGAGCGCTT
GGCGAAGTATAACCAGCTCCTGCGAATTGAGGAGGAGCTGGGCGCGGGTG
CTGAGTATGCGGGCAAATCTTATCGTAAGCCGGCCTGGATGGGGAACTAA
GAGTCACGTGTTTGTTGGAGGGAGGAAGAGTATGAGAGAAGAAGGAAGAG
GAATGTGGAAGATGAGCTTTTGTGTGGTGGTTTTATGCGCGAAGTTTGTG
ATGTGTGTCCGTGGCTATTTCTGTGTGGGTTTCTTTTATTTGTTGTCTAT
ATCTGACAACGGTTTCAGTTAATTAAGCTCCGAGCGCTGCAAACCGACAG
TCGGCAGCAATCAAAACGTGGCGACATATAGCAAAAGCGGCAGCGAAATC
GGTAGTATTCTAGGTCAGGAAAATGTGAGTTGAAAAGGAAGACAGACGTC
CAGCCGAGATAGTGGAGAGCAAGGGGTATGTAGGCTCGGATAAATGTCAG
ACAACGAAGATCCTGTCACATTCAGGAAGGTAGTTGAAACTAATTTCTAG
CATTTTTGGGAGAGACGAAGAAGAAGAAATGAGGGTCAAGGAGAACAAGA
GGAAGAGAAATGAAGGTGGGTCTCCATCCTTTGGAAGAATTTTCGCGTTT
CAGGGAGAAAGAAAAGAAGGAAGAGGCAAGCGAAGAGCTTCAGCGGTAGT
GACGGT
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Coding sequence (CDS) from alignment at chr3:919359..922564-

>NO03G03070.1 ID=NO03G03070.1|Name=NO03G03070.1|organism=Nannochloropsis oceanica|type=CDS|length=1461bp|location=Sequence derived from alignment at chr3:919359..922564- (Nannochloropsis oceanica)
ATGCGCCCCATTTCCAAACATAGATCCTTTTTGTCCCTCTCAATGAGGAC
TGCGACTGCTCTGTGCTTCCTGCTGGGGTCTCTCTCCTACTCGTCCGCTT
TCGTCGCCCCGTCGGCACCCAACACCCGCGCCCGCCACACAGTCTCCATG
GCTATTAAGAAGATTCACGCCCGCGAGATCATTGACTCCCGCGGAAACCC
CACCGTGGAGGTGGATGTCACCACCGACAAGGGCATCTTCACGGCTTCGG
TTCCTTCCGGCGCCTCCACGGGAGTGTACGAGGCATGCGAGCTGCGCGAT
GGAGGTGCCCGCTACATGGGCAAGGGCGTGCTTACCGCGGTCAAGAACGT
GAACGACATTATCGCCCCCGCCCTGGTGGGGAAGGATGAGACGGATCAAG
CTGCCTTGGACCAAGCCATGATTGACTTGGATGGGACGGAAAACAAGAGC
AAACTCGGCGCGAACGCCATTCTTGGTGTCTCTCTGGCGGTGGCAAAGGC
CGGTGCCGCCAATAAGGGCCTCCCGCTCTACAAGTACTTTGGGGCGCTTG
CGGGGAACACGAAGTTTGTCTTACCTGTGCCTGCATTCAATGTGATCAAT
GGTGGAAGCCACGCCGGGAATAAGCTTGCGTTTCAGGAGTTTATGATTTT
GCCGACGGGCGCGTCGTCGTTTAAGGAGGCGATGCAAATTGGTGCCGAAG
TGTACCACAACCTGAAAGGGGTCATCAAGAAGAAGTACGGGCAGGATGCG
ACCAACGTGGGAGATGAAGGGGGGTTTGCCCCGAACATTCAAAGTAACAA
GGAAGGGGTGGAGCTGTTGATGGATGCGATCCACAAGAGTGGGTATGCGG
ATAAGGTTGTGATCGGCATGGATGTGGCCAGTTCTGAATTTAGGACCAAG
GATGATAAATACGACTTGGACTTCAAGAGCAAGGACAACGACGGGAGTGA
GAAGATCACGGGCGTGCAGCTGGGTGACTTCTACAAGGAGCTGGCCCGGG
ACTTCCCCATTGTTTCCATCGAGGATCCCTTTGATCAGGATGACTGGGAC
AGTTGGATCAAGTTCACGACGGGCGTGACGAAAGACCTGCAGGTGGTGGG
CGACGACTTGACCGTTACCAACCCGAAGAAGATCCAAGAGGCCGCCGAGA
AGGGCGCCGCTAACGCCTTGCTCCTGAAGGTGAATCAGATCGGTTCCGTC
ACCGAGTCCATCGCCGCCGTCAAGCTGGCCAAGCAAAATGGGTGGGGAGT
CATGACCTCCCATCGCTCGGGCGAGACTGAGGACCACTACATTGCTGATT
TAGCCGTGGGTTTGTGCACGGGGCAGATCAAGACGGGCGCGCCTTGCCGA
TCTGAGCGCTTGGCGAAGTATAACCAGCTCCTGCGAATTGAGGAGGAGCT
GGGCGCGGGTGCTGAGTATGCGGGCAAATCTTATCGTAAGCCGGCCTGGA
TGGGGAACTAA
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Synonyms
Publications