NO03G03030.1, NO03G03030.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO03G03030.1
Unique NameNO03G03030.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1159
Alignment locationchr3:908646..910208 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:908646..910208 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO03G03030.1 vs.
Match: EWM29765.1 (ribosome production factor [Nannochloropsis gaditana])

HSP 1 Score: 537.3 bits (1383), Expect = 3.300e-149
Identity = 270/332 (81.33%), Postives = 295/332 (88.86%), Query Frame = 0 
Query:    1 MVKRDVSSIKNKAKRREMYAKVKVEKKRDRKAERIKRQKEAQELGEEAPPKQVPRTLDNTREVDETVVHPEDEEVLADEAEDEFQAYFVGSQAAKILITTRPRPSRELFHFVGDLMQLIPNAFFYPRKSFEVKSICKHAEQGGFTHVFILSEKSKVCNGLLVSHLPHGPTAFFKVSNVVPGAKIQHHGQPTAHVPELILNNFNTRLGHRIGRFLGSFFPHAPEFRGRQVVTFHNQRDFLFVRHHRYMFDEKKGSKPATAAIGGKKKKESGKGADAAALPMAGNIRARLQELGPRFTLKLRWLQEGTFDTQFGEYEWLHKRKEMDTTRRRFHL 333
            MVK++VS I+N+ KRRE++AKVK EKK+ +K+ER KRQ+EA ELG+EAPPKQVPRTL+NTREVDET+V P+D EV+ADEAEDEFQ YF G +  KILITTRPRPSRELFHFVGDLMQ+IPNAFFYPRKSFEVK+ICKHAE+GGFTHVFILSEK K CNGLLVSHLP GPT FFKVSNV PGAKI HHGQPTAHVPELILNNFNTRLGHR+GRFLGSFFPHAPEFRGRQVVTFHNQRDFLFVRHHRY+FDEKK +K        KK K +G G+ A A   AG IRARLQELGPRFTLKLRWLQEGTFDT+FGEYEWLHKRKEMDTTRRRFHL
Sbjct:    1 MVKKEVSRIRNRCKRREVHAKVKAEKKKVKKSERTKRQREALELGDEAPPKQVPRTLENTREVDETIVQPDDLEVVADEAEDEFQPYFSGKETPKILITTRPRPSRELFHFVGDLMQVIPNAFFYPRKSFEVKAICKHAEEGGFTHVFILSEKYKACNGLLVSHLPCGPTVFFKVSNVTPGAKIAHHGQPTAHVPELILNNFNTRLGHRVGRFLGSFFPHAPEFRGRQVVTFHNQRDFLFVRHHRYVFDEKK-AKSVPEINNPKKIKSAGDGSKAIA---AGGIRARLQELGPRFTLKLRWLQEGTFDTKFGEYEWLHKRKEMDTTRRRFHL 328
The following BLAST results are available for this feature:
BLAST of NO03G03030.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29765.13.300e-14981.33ribosome production factor [Nannochloropsis gadita... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO03G03030NO03G03030Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO03G03030.1NO03G03030.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO03G03030.1.cds1NO03G03030.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO03G03030.1.cds2NO03G03030.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO03G03030.1 ID=NO03G03030.1|Name=NO03G03030.1|organism=Nannochloropsis oceanica|type=mRNA|length=1159bp
CCACAGGAAAACTGCTGGCACCGGCCCGTCTGCTTAGCCTCCCACCAGTT
TCCGAGTATCTTGCAACAAACTTTTTGACCCGCTTGCCCTAAGCAGAAAA
TGGTGAAGCGGGATGTGTCTTCGATCAAAAACAAGGCGAAGCGCCGGGAG
ATGTACGCTAAGGTTAAGGTCGAGAAGAAGAGAGATAGGAAGGCGGAGCG
CATCAAGCGACAGAAGGAGGCGCAGGAGCTGGGAGAGGAGGCACCACCCA
AACAGGTACCCCGCACATTGGACAACACCCGAGAAGTAGACGAGACAGTG
GTACATCCTGAGGACGAAGAGGTCTTGGCCGACGAAGCAGAAGATGAATT
TCAAGCTTACTTCGTGGGCAGTCAAGCGGCAAAGATTCTCATTACTACCC
GCCCCCGCCCTTCCCGGGAGCTCTTTCATTTTGTTGGCGACCTCATGCAA
TTGATCCCCAACGCATTTTTCTATCCCCGGAAAAGTTTCGAGGTCAAGTC
CATTTGCAAGCACGCCGAGCAAGGTGGATTCACGCACGTCTTTATCCTCA
GCGAGAAATCTAAAGTCTGTAACGGCCTTCTCGTCTCCCACCTTCCCCAT
GGGCCCACCGCCTTCTTCAAGGTTTCCAATGTCGTGCCTGGCGCCAAGAT
CCAGCACCATGGCCAGCCCACAGCCCATGTTCCTGAACTCATCCTCAACA
ATTTCAACACTCGCCTGGGCCACCGTATCGGCCGGTTTCTTGGCTCTTTC
TTCCCGCACGCACCCGAGTTTCGTGGCCGTCAAGTGGTGACGTTTCATAA
TCAACGAGACTTTCTGTTTGTGCGACATCACCGGTACATGTTTGACGAGA
AGAAAGGTTCCAAGCCCGCGACTGCTGCCATCGGGGGAAAGAAGAAGAAG
GAGTCCGGTAAGGGGGCGGATGCCGCGGCCCTCCCCATGGCGGGCAATAT
TCGGGCCCGACTTCAGGAATTGGGTCCGCGCTTCACCCTCAAGCTAAGAT
GGTTGCAAGAAGGCACGTTTGACACCCAGTTTGGAGAGTACGAATGGCTG
CATAAGCGGAAGGAGATGGACACGACCCGGCGTCGTTTCCACTTGTAATT
TTTTAGGAGAAAAGGGCCAAAAGATCAAAAAGTAACACCTATTTAAATTT
CTTGAATGA
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protein sequence of NO03G03030.1

>NO03G03030.1-protein ID=NO03G03030.1-protein|Name=NO03G03030.1|organism=Nannochloropsis oceanica|type=polypeptide|length=333bp
MVKRDVSSIKNKAKRREMYAKVKVEKKRDRKAERIKRQKEAQELGEEAPP
KQVPRTLDNTREVDETVVHPEDEEVLADEAEDEFQAYFVGSQAAKILITT
RPRPSRELFHFVGDLMQLIPNAFFYPRKSFEVKSICKHAEQGGFTHVFIL
SEKSKVCNGLLVSHLPHGPTAFFKVSNVVPGAKIQHHGQPTAHVPELILN
NFNTRLGHRIGRFLGSFFPHAPEFRGRQVVTFHNQRDFLFVRHHRYMFDE
KKGSKPATAAIGGKKKKESGKGADAAALPMAGNIRARLQELGPRFTLKLR
WLQEGTFDTQFGEYEWLHKRKEMDTTRRRFHL*
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mRNA from alignment at chr3:908646..910208-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO03G03030.1 ID=NO03G03030.1|Name=NO03G03030.1|organism=Nannochloropsis oceanica|type=mRNA|length=1563bp|location=Sequence derived from alignment at chr3:908646..910208- (Nannochloropsis oceanica)
CCACAGGAAAACTGCTGGCACCGGCCCGTCTGCTTAGCCTCCCACCAGTT
TCCGAGTATCTTGCAACAAACTTTTTGACCCGCTTGCCCTAAGCAGAAAA
TGGTGAAGCGGGATGTGTCTTCGATCAAAAACAAGGCGAAGCGCCGGGAG
ATGTACGCTAAGGTTAAGGTCGAGAAGAAGAGAGATAGGAAGGCGGAGCG
CATCAAGCGACAGAAGGAGGCGCAGGAGCTGGGAGAGGAGGCACCACCCA
AACAGGTACTCTTTGATTTGGAGTGGAAAGAGGGCTAGGATTGAGATTTA
TGAATGTGGAGGGGGAAGGAAGAGGAAGACATCTATTTTGGTGCCTTACG
CGTCTTGGGGCTGTCGCAGATGTCCCATATTTGTTTTTTGCATCCCTCGT
GCGGGGCGGAAAGCTACGGAATGGAGAGGTTGGATTACCAAGTCCAGCCA
TGTGTTAACTTGCCTGCATACTTATCTATTGGACTCCTCGTGAAATGTCT
TTGCTTATATTCACATCCTTGCAAGGAGAGGCTGCAACTTGAAATCATTA
AAATCTGTTAGACCCGTCCGGGAGGGAAAGCAAAGATAGTGTAAGCGCCA
CAACCAGACAGTCAAAACTCACAACCCCCTCCCCCATCCACCCCTTCCGG
CATATCAAGGTACCCCGCACATTGGACAACACCCGAGAAGTAGACGAGAC
AGTGGTACATCCTGAGGACGAAGAGGTCTTGGCCGACGAAGCAGAAGATG
AATTTCAAGCTTACTTCGTGGGCAGTCAAGCGGCAAAGATTCTCATTACT
ACCCGCCCCCGCCCTTCCCGGGAGCTCTTTCATTTTGTTGGCGACCTCAT
GCAATTGATCCCCAACGCATTTTTCTATCCCCGGAAAAGTTTCGAGGTCA
AGTCCATTTGCAAGCACGCCGAGCAAGGTGGATTCACGCACGTCTTTATC
CTCAGCGAGAAATCTAAAGTCTGTAACGGCCTTCTCGTCTCCCACCTTCC
CCATGGGCCCACCGCCTTCTTCAAGGTTTCCAATGTCGTGCCTGGCGCCA
AGATCCAGCACCATGGCCAGCCCACAGCCCATGTTCCTGAACTCATCCTC
AACAATTTCAACACTCGCCTGGGCCACCGTATCGGCCGGTTTCTTGGCTC
TTTCTTCCCGCACGCACCCGAGTTTCGTGGCCGTCAAGTGGTGACGTTTC
ATAATCAACGAGACTTTCTGTTTGTGCGACATCACCGGTACATGTTTGAC
GAGAAGAAAGGTTCCAAGCCCGCGACTGCTGCCATCGGGGGAAAGAAGAA
GAAGGAGTCCGGTAAGGGGGCGGATGCCGCGGCCCTCCCCATGGCGGGCA
ATATTCGGGCCCGACTTCAGGAATTGGGTCCGCGCTTCACCCTCAAGCTA
AGATGGTTGCAAGAAGGCACGTTTGACACCCAGTTTGGAGAGTACGAATG
GCTGCATAAGCGGAAGGAGATGGACACGACCCGGCGTCGTTTCCACTTGT
AATTTTTTAGGAGAAAAGGGCCAAAAGATCAAAAAGTAACACCTATTTAA
ATTTCTTGAATGA
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Coding sequence (CDS) from alignment at chr3:908646..910208-

>NO03G03030.1 ID=NO03G03030.1|Name=NO03G03030.1|organism=Nannochloropsis oceanica|type=CDS|length=999bp|location=Sequence derived from alignment at chr3:908646..910208- (Nannochloropsis oceanica)
ATGGTGAAGCGGGATGTGTCTTCGATCAAAAACAAGGCGAAGCGCCGGGA
GATGTACGCTAAGGTTAAGGTCGAGAAGAAGAGAGATAGGAAGGCGGAGC
GCATCAAGCGACAGAAGGAGGCGCAGGAGCTGGGAGAGGAGGCACCACCC
AAACAGGTACCCCGCACATTGGACAACACCCGAGAAGTAGACGAGACAGT
GGTACATCCTGAGGACGAAGAGGTCTTGGCCGACGAAGCAGAAGATGAAT
TTCAAGCTTACTTCGTGGGCAGTCAAGCGGCAAAGATTCTCATTACTACC
CGCCCCCGCCCTTCCCGGGAGCTCTTTCATTTTGTTGGCGACCTCATGCA
ATTGATCCCCAACGCATTTTTCTATCCCCGGAAAAGTTTCGAGGTCAAGT
CCATTTGCAAGCACGCCGAGCAAGGTGGATTCACGCACGTCTTTATCCTC
AGCGAGAAATCTAAAGTCTGTAACGGCCTTCTCGTCTCCCACCTTCCCCA
TGGGCCCACCGCCTTCTTCAAGGTTTCCAATGTCGTGCCTGGCGCCAAGA
TCCAGCACCATGGCCAGCCCACAGCCCATGTTCCTGAACTCATCCTCAAC
AATTTCAACACTCGCCTGGGCCACCGTATCGGCCGGTTTCTTGGCTCTTT
CTTCCCGCACGCACCCGAGTTTCGTGGCCGTCAAGTGGTGACGTTTCATA
ATCAACGAGACTTTCTGTTTGTGCGACATCACCGGTACATGTTTGACGAG
AAGAAAGGTTCCAAGCCCGCGACTGCTGCCATCGGGGGAAAGAAGAAGAA
GGAGTCCGGTAAGGGGGCGGATGCCGCGGCCCTCCCCATGGCGGGCAATA
TTCGGGCCCGACTTCAGGAATTGGGTCCGCGCTTCACCCTCAAGCTAAGA
TGGTTGCAAGAAGGCACGTTTGACACCCAGTTTGGAGAGTACGAATGGCT
GCATAAGCGGAAGGAGATGGACACGACCCGGCGTCGTTTCCACTTGTAA
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Synonyms
Publications