NO03G02980.1, NO03G02980.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO03G02980.1
Unique NameNO03G02980.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length639
Alignment locationchr3:893171..893809 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:893171..893809 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO03G02980.1 vs.
Match: EWM29758.1 (endothelin-converting enzyme 2 [Nannochloropsis gaditana])

HSP 1 Score: 294.7 bits (753), Expect = 2.400e-76
Identity = 141/213 (66.20%), Postives = 167/213 (78.40%), Query Frame = 0 
Query:    1 MEPEDVKEYTKIDYWNSRFAQEESYDWLVTFEDIEALLREYIPTDRPIRVLHLGCGNSPLSTNLKTMLQPGSYLCNQDYSQVLISSMKKLHGEIPGEFEWMVGDMTDLGSAGFLLASFDVIIEKASLDALTVNEGDPWNPREEVVENVAKVMRGVTDLLKGDDGSIFLSISFHQKHFRQKLLK----GFDIQVKDIPTTKSLPHFFYACKPVK 210
            M+P+D  EY  ++YWN+RF QEESYDWLV FEDIE LLR+Y+P DRP+R+LH+GCGNS LS  LK  L P SY+CNQD+S+VLI+ M+  +GE  G FEWMVGDMTDL S+ F  ASFD++IEKA+LDALTV+ GDPWNPREEV E+VAKVMRGV  LL+ D  S+FLSISFHQKHFR KLL      F I V+DIP TKSLPHF Y C+  K
Sbjct:    1 MKPDD--EYKDVEYWNARFLQEESYDWLVAFEDIECLLRKYVPIDRPLRILHIGCGNSTLSIQLKHFLHPESYICNQDFSEVLINKMRATYGEETGRFEWMVGDMTDLASSAFPPASFDIVIEKAALDALTVHTGDPWNPREEVREDVAKVMRGVAMLLRNDCESLFLSISFHQKHFRLKLLDDMEINFQITVQDIPHTKSLPHFLYICEKKK 211
The following BLAST results are available for this feature:
BLAST of NO03G02980.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29758.12.400e-7666.20endothelin-converting enzyme 2 [Nannochloropsis ga... [more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO03G02980NO03G02980Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO03G02980.1NO03G02980.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO03G02980.1.cds1NO03G02980.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO03G02980.1 ID=NO03G02980.1|Name=NO03G02980.1|organism=Nannochloropsis oceanica|type=mRNA|length=639bp
ATGGAGCCTGAGGATGTCAAGGAGTACACGAAAATCGACTACTGGAATTC
ACGTTTTGCTCAAGAGGAGTCATACGATTGGCTTGTGACATTTGAAGACA
TCGAGGCCCTGTTGAGAGAGTACATACCAACCGACCGTCCAATCCGTGTG
CTCCACCTTGGGTGCGGTAACTCTCCTCTCTCCACAAACCTGAAAACCAT
GCTGCAACCGGGAAGCTACCTCTGTAACCAGGACTACTCTCAAGTTCTGA
TAAGCAGCATGAAAAAACTACACGGAGAGATACCGGGTGAGTTTGAGTGG
ATGGTTGGGGACATGACTGATTTGGGCAGCGCCGGTTTCCTGCTCGCTTC
CTTTGACGTTATCATCGAAAAGGCGTCTTTGGACGCATTAACTGTAAATG
AAGGCGACCCCTGGAATCCGCGAGAGGAGGTCGTGGAGAATGTGGCGAAG
GTAATGCGAGGCGTGACAGATTTGTTGAAGGGAGATGACGGGAGTATTTT
TTTGAGCATTTCTTTCCACCAAAAGCATTTTCGGCAAAAGCTGTTGAAAG
GGTTTGATATCCAGGTGAAGGATATCCCGACTACCAAGTCCTTGCCGCAT
TTTTTTTATGCTTGCAAACCAGTCAAGGCAAGCAAGTGA
back to top

protein sequence of NO03G02980.1

>NO03G02980.1-protein ID=NO03G02980.1-protein|Name=NO03G02980.1|organism=Nannochloropsis oceanica|type=polypeptide|length=213bp
MEPEDVKEYTKIDYWNSRFAQEESYDWLVTFEDIEALLREYIPTDRPIRV
LHLGCGNSPLSTNLKTMLQPGSYLCNQDYSQVLISSMKKLHGEIPGEFEW
MVGDMTDLGSAGFLLASFDVIIEKASLDALTVNEGDPWNPREEVVENVAK
VMRGVTDLLKGDDGSIFLSISFHQKHFRQKLLKGFDIQVKDIPTTKSLPH
FFYACKPVKASK*
back to top

mRNA from alignment at chr3:893171..893809+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO03G02980.1 ID=NO03G02980.1|Name=NO03G02980.1|organism=Nannochloropsis oceanica|type=mRNA|length=639bp|location=Sequence derived from alignment at chr3:893171..893809+ (Nannochloropsis oceanica)
ATGGAGCCTGAGGATGTCAAGGAGTACACGAAAATCGACTACTGGAATTC
ACGTTTTGCTCAAGAGGAGTCATACGATTGGCTTGTGACATTTGAAGACA
TCGAGGCCCTGTTGAGAGAGTACATACCAACCGACCGTCCAATCCGTGTG
CTCCACCTTGGGTGCGGTAACTCTCCTCTCTCCACAAACCTGAAAACCAT
GCTGCAACCGGGAAGCTACCTCTGTAACCAGGACTACTCTCAAGTTCTGA
TAAGCAGCATGAAAAAACTACACGGAGAGATACCGGGTGAGTTTGAGTGG
ATGGTTGGGGACATGACTGATTTGGGCAGCGCCGGTTTCCTGCTCGCTTC
CTTTGACGTTATCATCGAAAAGGCGTCTTTGGACGCATTAACTGTAAATG
AAGGCGACCCCTGGAATCCGCGAGAGGAGGTCGTGGAGAATGTGGCGAAG
GTAATGCGAGGCGTGACAGATTTGTTGAAGGGAGATGACGGGAGTATTTT
TTTGAGCATTTCTTTCCACCAAAAGCATTTTCGGCAAAAGCTGTTGAAAG
GGTTTGATATCCAGGTGAAGGATATCCCGACTACCAAGTCCTTGCCGCAT
TTTTTTTATGCTTGCAAACCAGTCAAGGCAAGCAAGTGA
back to top

Coding sequence (CDS) from alignment at chr3:893171..893809+

>NO03G02980.1 ID=NO03G02980.1|Name=NO03G02980.1|organism=Nannochloropsis oceanica|type=CDS|length=639bp|location=Sequence derived from alignment at chr3:893171..893809+ (Nannochloropsis oceanica)
ATGGAGCCTGAGGATGTCAAGGAGTACACGAAAATCGACTACTGGAATTC
ACGTTTTGCTCAAGAGGAGTCATACGATTGGCTTGTGACATTTGAAGACA
TCGAGGCCCTGTTGAGAGAGTACATACCAACCGACCGTCCAATCCGTGTG
CTCCACCTTGGGTGCGGTAACTCTCCTCTCTCCACAAACCTGAAAACCAT
GCTGCAACCGGGAAGCTACCTCTGTAACCAGGACTACTCTCAAGTTCTGA
TAAGCAGCATGAAAAAACTACACGGAGAGATACCGGGTGAGTTTGAGTGG
ATGGTTGGGGACATGACTGATTTGGGCAGCGCCGGTTTCCTGCTCGCTTC
CTTTGACGTTATCATCGAAAAGGCGTCTTTGGACGCATTAACTGTAAATG
AAGGCGACCCCTGGAATCCGCGAGAGGAGGTCGTGGAGAATGTGGCGAAG
GTAATGCGAGGCGTGACAGATTTGTTGAAGGGAGATGACGGGAGTATTTT
TTTGAGCATTTCTTTCCACCAAAAGCATTTTCGGCAAAAGCTGTTGAAAG
GGTTTGATATCCAGGTGAAGGATATCCCGACTACCAAGTCCTTGCCGCAT
TTTTTTTATGCTTGCAAACCAGTCAAGGCAAGCAAGTGA
back to top
Synonyms
Publications