NO03G02940.1, NO03G02940.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO03G02940.1
Unique NameNO03G02940.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length890
Alignment locationchr3:884562..885945 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:884562..885945 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO03G02940.1 vs.
Match: XP_009515543.1 (hypothetical protein PHYSODRAFT_293850 [Phytophthora sojae]; EGZ28268.1 hypothetical protein PHYSODRAFT_293850 [Phytophthora sojae])

HSP 1 Score: 94.0 bits (232), Expect = 8.100e-16
Identity = 73/201 (36.32%), Postives = 119/201 (59.20%), Query Frame = 0 
Query:   83 MGRYSSVQAYGDNNPKVASVAY-----------EGGGEEGTAQRIKTEKLENVTGSTAGASSSSFHIYRAHRRTEMNRLEDLDRRETEKQEQEAFERSLEQKRVQSEERTRRLAEKRRRKKQAMKERKKQSPQGQVHEQDMSSDEDERDEEKWRDGSASKKRKGEAVDCPMVMPIVQLRNDGSFLETMLALQKEKAGKVRK 273
            MGRY++VQ + D + K A+VAY           +G  E   + ++   +++NV+GS+AGA S  FH YRA RR EM R+E +++R  E + Q+ FE   ++   + + + ++ AEKRRR+K+  K +     Q + HE++    E++++EE+   GSA K++  +  + P  +P  ++ NDGSFLE ML LQK+KA    K
Sbjct:    1 MGRYTTVQTFSDQDAKGAAVAYNAASEPAAAPADGANESKDSSKLHINRVDNVSGSSAGAGSGDFHTYRAARRREMERVEAMEQRYKENKAQQEFEAKRKRSAEEFDAKMQKRAEKRRRRKERAKAKALDGVQ-EEHEEEQK--EEKKEEEEDTTGSADKEK--QVPETPGGVP--EIPNDGSFLEKMLTLQKQKAESEEK 194
The following BLAST results are available for this feature:
BLAST of NO03G02940.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_009515543.18.100e-1636.32hypothetical protein PHYSODRAFT_293850 [Phytophtho... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO03G02940NO03G02940Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO03G02940.1NO03G02940.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO03G02940.1.cds1NO03G02940.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO03G02940.1.cds2NO03G02940.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO03G02940.1.cds3NO03G02940.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO03G02940.1 ID=NO03G02940.1|Name=NO03G02940.1|organism=Nannochloropsis oceanica|type=mRNA|length=890bp
ATGTGGGGGACGGGCCAAAGCAAGGGAGTCAAGTGGCCGGTCTTCGCTAC
TTGGCCCTACACGCCGAGCCTTAAGGACCAACACGGACGCGGCGACTGTC
CTGTATTGTGTGTTGCGAGGAGGGTGGGCGTGGATTGCCTCTCCCTAGCA
CGGCCTCTCGTTAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAG
CAGCAGCAGCAGCAGCAGTTGTTGCCCCTCTCACAGCAGGAGCAGTATGG
GGCGCTACTCAAGCGTGCAGGCATATGGCGATAACAATCCCAAGGTGGCC
AGCGTGGCGTATGAGGGCGGTGGGGAGGAGGGTACGGCCCAGCGCATCAA
GACCGAGAAGCTTGAAAATGTGACGGGCAGTACGGCAGGGGCGAGCAGCA
GCAGCTTTCATATCTATCGGGCCCATCGACGCACAGAAATGAACAGATTG
GAGGACCTTGACAGGAGGGAGACCGAGAAGCAAGAGCAGGAAGCGTTTGA
GCGGTCGTTGGAGCAGAAGCGGGTTCAGAGCGAGGAGCGTACCCGGAGGC
TAGCCGAGAAGCGCCGTCGCAAGAAGCAGGCCATGAAGGAGAGGAAAAAG
CAGTCGCCACAGGGACAGGTCCACGAGCAAGACATGAGCAGCGACGAGGA
CGAGCGCGATGAGGAGAAGTGGCGAGATGGCAGCGCAAGCAAGAAGAGGA
AGGGAGAGGCGGTTGACTGCCCCATGGTGATGCCCATCGTACAACTCAGG
AACGACGGAAGTTTCTTGGAAACGATGCTGGCGCTGCAAAAAGAGAAGGC
GGGGAAAGTGAGAAAGGAGGGCAACGGAAGCACTGCACCGTGACTGAGTG
AACTCAGGGAAAAGTAACAAATATGTACAGAAGGATGAGA
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protein sequence of NO03G02940.1

>NO03G02940.1-protein ID=NO03G02940.1-protein|Name=NO03G02940.1|organism=Nannochloropsis oceanica|type=polypeptide|length=281bp
MWGTGQSKGVKWPVFATWPYTPSLKDQHGRGDCPVLCVARRVGVDCLSLA
RPLVSSSSSSSSSSSSSSSSSSSCCPSHSRSSMGRYSSVQAYGDNNPKVA
SVAYEGGGEEGTAQRIKTEKLENVTGSTAGASSSSFHIYRAHRRTEMNRL
EDLDRRETEKQEQEAFERSLEQKRVQSEERTRRLAEKRRRKKQAMKERKK
QSPQGQVHEQDMSSDEDERDEEKWRDGSASKKRKGEAVDCPMVMPIVQLR
NDGSFLETMLALQKEKAGKVRKEGNGSTAP*
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mRNA from alignment at chr3:884562..885945+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO03G02940.1 ID=NO03G02940.1|Name=NO03G02940.1|organism=Nannochloropsis oceanica|type=mRNA|length=1384bp|location=Sequence derived from alignment at chr3:884562..885945+ (Nannochloropsis oceanica)
ATGTGGGGGACGGGCCAAAGCAAGGGAGTCAAGTGGCCGGTCTTCGCTAC
TTGGCCCTACACGCCGAGCCTTAAGGACCAACACGGACGCGGCGACTGTC
CTGTATTGTGTGTTGCGAGGAGGGTGGGCGTGGATTGGTGCGATTGAGTT
GCTTGTGTTGTCCTTGAGACATTATGCAAGCTTCTCCTTTCCTTTAGCGA
GGACTCCTTGAAGGCGTGTCATCCTGTCATCGTCCGCCCCCAAAACCCCT
GTCGGCACAACAATACGCATGCGCAGCACAGTTGGGGGCTGTCTATCACG
GAGTGGCTGGTGGTAGACAGAGAGGCAGAGGGGTGGCCGATTTCACAGAG
GCAAACACATACTTTAGTAGTACTCATCCCAACTCATCCCCAGCCTCTCC
CTAGCACGGCCTCTCGTTAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAG
CAGCAGCAGCAGCAGCAGCAGCAGTTGTTGCCCCTCTCACAGCAGGAGCA
GTATGGGGCGCTACTCAAGCGTGCAGGCATATGGCGATAACAATCCCAAG
GTGGCCAGCGTGGCGTATGAGGGCGGTGGGGAGGAGGGTACGGCCCAGCG
CATCAAGGTAATATGCATTGTGTCTCTCCTTCCCCCTTTGCCCCTCCACG
CTCCCCAAACCCACATTATGACTGATCACGAGCTCCTTGTGCTAGCTTGT
AACGCTTCTGTATGAGCAGTGTGCTTGTCCTAGCAGCGCTGCTCTGCTTA
AGAATAAGTCCACCATTTCACCTGTCCGACCTTCCACTCATAACCCTCAT
TCCACTCCTTCACGCCCTTCCCTCACCTTCACCCCCTCTCGTCAGACCGA
GAAGCTTGAAAATGTGACGGGCAGTACGGCAGGGGCGAGCAGCAGCAGCT
TTCATATCTATCGGGCCCATCGACGCACAGAAATGAACAGATTGGAGGAC
CTTGACAGGAGGGAGACCGAGAAGCAAGAGCAGGAAGCGTTTGAGCGGTC
GTTGGAGCAGAAGCGGGTTCAGAGCGAGGAGCGTACCCGGAGGCTAGCCG
AGAAGCGCCGTCGCAAGAAGCAGGCCATGAAGGAGAGGAAAAAGCAGTCG
CCACAGGGACAGGTCCACGAGCAAGACATGAGCAGCGACGAGGACGAGCG
CGATGAGGAGAAGTGGCGAGATGGCAGCGCAAGCAAGAAGAGGAAGGGAG
AGGCGGTTGACTGCCCCATGGTGATGCCCATCGTACAACTCAGGAACGAC
GGAAGTTTCTTGGAAACGATGCTGGCGCTGCAAAAAGAGAAGGCGGGGAA
AGTGAGAAAGGAGGGCAACGGAAGCACTGCACCGTGACTGAGTGAACTCA
GGGAAAAGTAACAAATATGTACAGAAGGATGAGA
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Coding sequence (CDS) from alignment at chr3:884562..885945+

>NO03G02940.1 ID=NO03G02940.1|Name=NO03G02940.1|organism=Nannochloropsis oceanica|type=CDS|length=843bp|location=Sequence derived from alignment at chr3:884562..885945+ (Nannochloropsis oceanica)
ATGTGGGGGACGGGCCAAAGCAAGGGAGTCAAGTGGCCGGTCTTCGCTAC
TTGGCCCTACACGCCGAGCCTTAAGGACCAACACGGACGCGGCGACTGTC
CTGTATTGTGTGTTGCGAGGAGGGTGGGCGTGGATTGCCTCTCCCTAGCA
CGGCCTCTCGTTAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAG
CAGCAGCAGCAGCAGCAGTTGTTGCCCCTCTCACAGCAGGAGCAGTATGG
GGCGCTACTCAAGCGTGCAGGCATATGGCGATAACAATCCCAAGGTGGCC
AGCGTGGCGTATGAGGGCGGTGGGGAGGAGGGTACGGCCCAGCGCATCAA
GACCGAGAAGCTTGAAAATGTGACGGGCAGTACGGCAGGGGCGAGCAGCA
GCAGCTTTCATATCTATCGGGCCCATCGACGCACAGAAATGAACAGATTG
GAGGACCTTGACAGGAGGGAGACCGAGAAGCAAGAGCAGGAAGCGTTTGA
GCGGTCGTTGGAGCAGAAGCGGGTTCAGAGCGAGGAGCGTACCCGGAGGC
TAGCCGAGAAGCGCCGTCGCAAGAAGCAGGCCATGAAGGAGAGGAAAAAG
CAGTCGCCACAGGGACAGGTCCACGAGCAAGACATGAGCAGCGACGAGGA
CGAGCGCGATGAGGAGAAGTGGCGAGATGGCAGCGCAAGCAAGAAGAGGA
AGGGAGAGGCGGTTGACTGCCCCATGGTGATGCCCATCGTACAACTCAGG
AACGACGGAAGTTTCTTGGAAACGATGCTGGCGCTGCAAAAAGAGAAGGC
GGGGAAAGTGAGAAAGGAGGGCAACGGAAGCACTGCACCGTGA
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Synonyms
Publications