|
Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr3 | genome | chr3:876254..878410 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO03G02910.1 vs.
Match: EWM29778.1 (cell division control protein 2 [Nannochloropsis gaditana]) HSP 1 Score: 538.5 bits (1386), Expect = 1.300e-149 Identity = 267/331 (80.66%), Postives = 281/331 (84.89%), Query Frame = 0
Query: 1 MDRFANIQQIGEGTYGVVYKGYMKGSGG---SSSGELIALKQIRLADEDEGVPSTAIREISLLKELSHPNVVTLKDVIYADNRLYLVFEYLDQDLKRYMDGCKTGLDPALVKSYLHQMIQGVAFCHSHRVLHRDLKPQNLLIDRHGCLKLADFGLARAFNVPLRQYTREVVTLWYRAPEILLGAEHYSTPVDTWSIGCIFAEMLNKEPLFPGDSEIDELFRIFRTLGTPDDDMWPKVSELPNYKTQFPKWRRQPLGMSVARLCSTGIDLLS------------------------------RLLTYEPTARITCREAKEHPYFADLVSRND 299
MDRF NIQQIGEGTYG+VYKGYMKG G SS+GELIALKQIRLADEDEGVPSTAIREISLLKELSHPNVVTLKDVIYADNRLYLVFEYLDQDLKRYMDGCKTGLD LVKSYLHQMIQGVAFCHSHRVLHRDLKPQNLLIDR G LKLADFGLARAFNVPLRQYTREVVTLWYRAPEILLGAEHYSTPVDTWSIGCIFAEMLNKEPLFPGDSEIDELFRIFR LGTP+D++WPKV+ELPNYKTQFPKW+RQ L +V+RLC+ G+DLLS RLLTYEPTARITCREA++H YFA L + D
Sbjct: 1 MDRFTNIQQIGEGTYGIVYKGYMKGPGSATTSSNGELIALKQIRLADEDEGVPSTAIREISLLKELSHPNVVTLKDVIYADNRLYLVFEYLDQDLKRYMDGCKTGLDSTLVKSYLHQMIQGVAFCHSHRVLHRDLKPQNLLIDRQGRLKLADFGLARAFNVPLRQYTREVVTLWYRAPEILLGAEHYSTPVDTWSIGCIFAEMLNKEPLFPGDSEIDELFRIFRVLGTPNDEIWPKVTELPNYKTQFPKWKRQSLDRNVSRLCADGLDLLSVCATSKKLSWRAKEVVINTLPHFFLSYLPKRLLTYEPTARITCREAQDHAYFAGLGACKD 331
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO03G02910.1 ID=NO03G02910.1|Name=NO03G02910.1|organism=Nannochloropsis oceanica|type=mRNA|length=1606bp AAGGAGCTTTGGATGCTAGCCTTGCGTTGCCTATCCCCTTCAGACAGTTG TGAGGGAGAGGGAGAGGAGGGATGTCAGCATGGATGAGCATGTGGCTTCC CAGTTGCTATGCGGGGGACAAGGCAAGCTCAAGCTGGAACACTGAGCGAC AGGTTCAGAAGCAGGTCATGAGGCCCCATGCACAAAAGAGACGCCACACC TCCGACCAAAATCCCGTCGCTTTCGCCCCTTCCTAGCCACTCCCTTCGCT CACCATGTACGCTCTGTTGTGGTCGATGTGACTTTCAGGGGTCAATCAAG GCGGTCAATTTCTTACTGTCTCTCCCGTCGATGGGCGAGCGATTCTTCCT TGAAAGGAGTCCTCTCTCCGAAATTGTCAACGGCTGCATGCCTCTGTACA ACATTCTCATGGTACCATTTCCTCACACTCCCGATCTGAAGCGTCGTATT GGACAGCAGGCCCAGCCACACTTTCTCCTACGACCGCTTCCGCGGGCCTG GCTGTGAACAGGGACAAAGAGTAAACGAGCACCGTACGCGCTCCTTTCAT TCCTTCCTCCAGCCGAGACCTCCCCTCCCCCTACTACTTATCCTCTAACT TGTTCGGTCTTGCGCGTTTCCTGCTGCCATGGACCGGTTCGCCAACATCC AGCAAATTGGGGAGGGTACATATGGGGTTGTTTATAAGGGCTACATGAAG GGCTCGGGGGGCTCATCCAGTGGGGAGCTTATCGCCCTGAAACAGATCCG GTTGGCCGACGAAGATGAAGGGGTGCCCTCCACCGCCATTCGGGAAATCT CCCTTCTTAAAGAGCTGTCGCACCCAAACGTGGTCACGCTTAAGGATGTG ATTTACGCGGATAATCGGCTGTACTTAGTTTTTGAATACCTGGACCAGGA TCTGAAGCGCTACATGGATGGATGCAAAACGGGCTTGGACCCCGCCTTAG TCAAGTCGTACTTACACCAGATGATCCAGGGGGTTGCCTTCTGCCATTCG CACCGGGTGCTGCACCGAGATCTCAAGCCCCAGAATCTGCTCATCGACCG CCATGGATGCCTTAAGCTCGCTGACTTTGGTCTTGCTCGGGCGTTTAATG TGCCACTGCGGCAGTATACGAGGGAGGTGGTGACGTTGTGGTACCGGGCG CCCGAGATTCTGCTTGGGGCCGAGCACTACTCCACCCCTGTGGACACGTG GTCCATCGGCTGCATATTTGCGGAAATGTTGAATAAGGAGCCTCTCTTTC CGGGGGACTCGGAGATCGATGAGCTCTTTCGCATCTTCAGGACGCTTGGC ACGCCGGACGACGACATGTGGCCCAAGGTTTCGGAGCTACCCAACTACAA GACACAATTCCCCAAATGGAGACGGCAGCCGCTCGGCATGAGCGTGGCCC GCCTCTGCTCCACTGGAATAGATCTCCTTTCGCGGCTTCTGACGTACGAG CCGACGGCCCGCATCACATGCAGGGAAGCCAAGGAGCACCCCTATTTTGC GGATTTGGTGTCAAGGAATGACACTGTGTAGCAACAGACATGCGAGCCAA CAAATCTTGTAGGAGGATGCAGTGATCAATGCACCAAAAAACCAATCCAC CATAAG back to topprotein sequence of NO03G02910.1 >NO03G02910.1-protein ID=NO03G02910.1-protein|Name=NO03G02910.1|organism=Nannochloropsis oceanica|type=polypeptide|length=301bp MDRFANIQQIGEGTYGVVYKGYMKGSGGSSSGELIALKQIRLADEDEGVP STAIREISLLKELSHPNVVTLKDVIYADNRLYLVFEYLDQDLKRYMDGCK TGLDPALVKSYLHQMIQGVAFCHSHRVLHRDLKPQNLLIDRHGCLKLADF GLARAFNVPLRQYTREVVTLWYRAPEILLGAEHYSTPVDTWSIGCIFAEM LNKEPLFPGDSEIDELFRIFRTLGTPDDDMWPKVSELPNYKTQFPKWRRQ PLGMSVARLCSTGIDLLSRLLTYEPTARITCREAKEHPYFADLVSRNDTV * back to topmRNA from alignment at chr3:876254..878410- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO03G02910.1 ID=NO03G02910.1|Name=NO03G02910.1|organism=Nannochloropsis oceanica|type=mRNA|length=2157bp|location=Sequence derived from alignment at chr3:876254..878410- (Nannochloropsis oceanica) AAGGAGCTTTGGATGCTAGCCTTGCGTTGCCTATCCCCTTCAGACAGTTG
TGAGGGAGAGGGAGAGGAGGGATGTCAGCATGGATGAGCATGTGGCTTCC
CAGTTGCTATGCGGGGGACAAGGCAAGCTCAAGCTGGAACACTGAGCGAC
AGGTTCAGAAGCAGGTCATGAGGCCCCATGCACAAAAGAGACGCCACACC
TCCGACCAAAATCCCGTCGCTTTCGCCCCTTCCTAGCCACTCCCTTCGCT
CACCATGTACGCTCTGTTGTGGTCGATGTGACTTTCAGGGGTCAATCAAG
GCGGTCAATTTCTTACTGTCTCTCCCGTCGATGGGCGAGCGATTCTTCCT
TGAAAGGAGTCCTCTCTCCGAAATTGTCAACGGCTGCATGCCTCTGTACA
ACATTCTCATGGTACCATTTCCTCACACTCCCGATCTGAAGCGTCGTATT
GGACAGCAGGCCCAGCCACACTTTCTCCTACGACCGCTTCCGCGGGCCTG
GCTGTGAACAGGGACAAAGAGTAAACGAGCACCGTACGCGCTCCTTTCAT
TCCTTCCTCCAGCCGAGACCTCCCCTCCCCCTACTACTTATCCTCTAACT
TGTTCGGTCTTGCGCGTTTCCTGCTGCCATGGACCGGTTCGCCAACATCC
AGCAAATTGGGGAGGGTACATATGGGGTTGTTTATAAGGGCTACATGAAG
GGCTCGGGGGGCTCATCCAGTGGGGAGCTTATCGCCCTGAAACAGATCCG
GTTGGCCGACGAAGATGAAGGGGTGCCCTCCACCGCCATTCGGGAAATCT
CCCTTCTTAAAGAGCTGTCGCACCCAAACGTGGTCACGCTTAAGGATGTG
ATTTACGCGGATAATCGGCTGTACTTAGTTTTTGAATACCTGGACCAGGA
TCTGAAGCGCTACATGGATGGATGCAAAACGGGCTTGGACCCCGCCTTAG
TCAAGGTGCGTTTCGGGTTGCGGGCTATGGGGAGTGGCTATGGCTTTCGC
ATAGATAAAGGCTGTGTTTGATCTTCGTTTTTCCGCGTTGACTATTTTAT
GTATCAATCCATCTCCTGCACGTCCCCCCCTCTACCTCTTCTACAGTCGT
ACTTACACCAGATGATCCAGGGGGTTGCCTTCTGCCATTCGCACCGGGTG
CTGCACCGAGATCTCAAGCCCCAGAATCTGCTCATCGACCGCCATGGATG
CCTTAAGCTCGCTGACTTTGGTCTTGCTCGGGCGTTTAATGTGCCACTGC
GGCAGTATACGAGGGAGGTGAGAAAGTGGCACAGGAAGAGTGTAAGCCCT
GTGGGGAAGCCGTAGGAATTTGGGACAGAGAGGGGTGGTTGCGGTTTTGA
GAGGGAAAATACTGCAGGATTAAGGAATATACTTTAAGCGTCTTTCATCC
TTTCTGTTTCTTTTTGCCCCCTTCCCCCCCACACATGTAAGGTGGTGACG
TTGTGGTACCGGGCGCCCGAGATTCTGCTTGGGGCCGAGCACTACTCCAC
CCCTGTGGACACGTGGTCCATCGGCTGCATATTTGCGGAAATGTTGAATA
AGGAGCCTCTCTTTCCGGGGGACTCGGAGATCGATGAGCTCTTTCGCATC
TTCAGGTAATAGGTGGATGAAGGCGGGGGGCTGTTCGTGTAGGTCCCAGG
TTTGAGGCGGGCTCTACGCACTCACTTTCTGCTCCATTCTTCTCTCTATC
TCGCCTAGGACGCTTGGCACGCCGGACGACGACATGTGGCCCAAGGTTTC
GGAGCTACCCAACTACAAGACACAATTCCCCAAATGGAGACGGCAGCCGC
TCGGCATGAGCGTGGCCCGCCTCTGCTCCACTGGAATAGATCTCCTTTCG
GTGCGTGATTCAGATTGATTGAAAAGAGGGGGCAAGGGCCCATACGAATA
CCTTCAAACAGATCGTTAGAAATCATCTGGCGCGTCTCTTCTATAAATCG
CCCACACATTCTCCCTCTCCCTCCCAAAAACAGCGGCTTCTGACGTACGA
GCCGACGGCCCGCATCACATGCAGGGAAGCCAAGGAGCACCCCTATTTTG
CGGATTTGGTGTCAAGGAATGACACTGTGTAGCAACAGACATGCGAGCCA
ACAAATCTTGTAGGAGGATGCAGTGATCAATGCACCAAAAAACCAATCCA
CCATAAG back to topCoding sequence (CDS) from alignment at chr3:876254..878410- >NO03G02910.1 ID=NO03G02910.1|Name=NO03G02910.1|organism=Nannochloropsis oceanica|type=CDS|length=903bp|location=Sequence derived from alignment at chr3:876254..878410- (Nannochloropsis oceanica) ATGGACCGGTTCGCCAACATCCAGCAAATTGGGGAGGGTACATATGGGGT TGTTTATAAGGGCTACATGAAGGGCTCGGGGGGCTCATCCAGTGGGGAGC TTATCGCCCTGAAACAGATCCGGTTGGCCGACGAAGATGAAGGGGTGCCC TCCACCGCCATTCGGGAAATCTCCCTTCTTAAAGAGCTGTCGCACCCAAA CGTGGTCACGCTTAAGGATGTGATTTACGCGGATAATCGGCTGTACTTAG TTTTTGAATACCTGGACCAGGATCTGAAGCGCTACATGGATGGATGCAAA ACGGGCTTGGACCCCGCCTTAGTCAAGTCGTACTTACACCAGATGATCCA GGGGGTTGCCTTCTGCCATTCGCACCGGGTGCTGCACCGAGATCTCAAGC CCCAGAATCTGCTCATCGACCGCCATGGATGCCTTAAGCTCGCTGACTTT GGTCTTGCTCGGGCGTTTAATGTGCCACTGCGGCAGTATACGAGGGAGGT GGTGACGTTGTGGTACCGGGCGCCCGAGATTCTGCTTGGGGCCGAGCACT ACTCCACCCCTGTGGACACGTGGTCCATCGGCTGCATATTTGCGGAAATG TTGAATAAGGAGCCTCTCTTTCCGGGGGACTCGGAGATCGATGAGCTCTT TCGCATCTTCAGGACGCTTGGCACGCCGGACGACGACATGTGGCCCAAGG TTTCGGAGCTACCCAACTACAAGACACAATTCCCCAAATGGAGACGGCAG CCGCTCGGCATGAGCGTGGCCCGCCTCTGCTCCACTGGAATAGATCTCCT TTCGCGGCTTCTGACGTACGAGCCGACGGCCCGCATCACATGCAGGGAAG CCAAGGAGCACCCCTATTTTGCGGATTTGGTGTCAAGGAATGACACTGTG TAG back to top
|