NO03G02910.1, NO03G02910.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO03G02910.1
Unique NameNO03G02910.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1606
Alignment locationchr3:876254..878410 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:876254..878410 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO03G02910.1 vs.
Match: EWM29778.1 (cell division control protein 2 [Nannochloropsis gaditana])

HSP 1 Score: 538.5 bits (1386), Expect = 1.300e-149
Identity = 267/331 (80.66%), Postives = 281/331 (84.89%), Query Frame = 0
Query:    1 MDRFANIQQIGEGTYGVVYKGYMKGSGG---SSSGELIALKQIRLADEDEGVPSTAIREISLLKELSHPNVVTLKDVIYADNRLYLVFEYLDQDLKRYMDGCKTGLDPALVKSYLHQMIQGVAFCHSHRVLHRDLKPQNLLIDRHGCLKLADFGLARAFNVPLRQYTREVVTLWYRAPEILLGAEHYSTPVDTWSIGCIFAEMLNKEPLFPGDSEIDELFRIFRTLGTPDDDMWPKVSELPNYKTQFPKWRRQPLGMSVARLCSTGIDLLS------------------------------RLLTYEPTARITCREAKEHPYFADLVSRND 299
            MDRF NIQQIGEGTYG+VYKGYMKG G    SS+GELIALKQIRLADEDEGVPSTAIREISLLKELSHPNVVTLKDVIYADNRLYLVFEYLDQDLKRYMDGCKTGLD  LVKSYLHQMIQGVAFCHSHRVLHRDLKPQNLLIDR G LKLADFGLARAFNVPLRQYTREVVTLWYRAPEILLGAEHYSTPVDTWSIGCIFAEMLNKEPLFPGDSEIDELFRIFR LGTP+D++WPKV+ELPNYKTQFPKW+RQ L  +V+RLC+ G+DLLS                              RLLTYEPTARITCREA++H YFA L +  D
Sbjct:    1 MDRFTNIQQIGEGTYGIVYKGYMKGPGSATTSSNGELIALKQIRLADEDEGVPSTAIREISLLKELSHPNVVTLKDVIYADNRLYLVFEYLDQDLKRYMDGCKTGLDSTLVKSYLHQMIQGVAFCHSHRVLHRDLKPQNLLIDRQGRLKLADFGLARAFNVPLRQYTREVVTLWYRAPEILLGAEHYSTPVDTWSIGCIFAEMLNKEPLFPGDSEIDELFRIFRVLGTPNDEIWPKVTELPNYKTQFPKWKRQSLDRNVSRLCADGLDLLSVCATSKKLSWRAKEVVINTLPHFFLSYLPKRLLTYEPTARITCREAQDHAYFAGLGACKD 331          
The following BLAST results are available for this feature:
BLAST of NO03G02910.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29778.11.300e-14980.66cell division control protein 2 [Nannochloropsis g... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO03G02910NO03G02910Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO03G02910.1NO03G02910.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO03G02910.1.cds1NO03G02910.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO03G02910.1.cds2NO03G02910.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO03G02910.1.cds3NO03G02910.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO03G02910.1.cds4NO03G02910.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO03G02910.1.cds5NO03G02910.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO03G02910.1 ID=NO03G02910.1|Name=NO03G02910.1|organism=Nannochloropsis oceanica|type=mRNA|length=1606bp
AAGGAGCTTTGGATGCTAGCCTTGCGTTGCCTATCCCCTTCAGACAGTTG
TGAGGGAGAGGGAGAGGAGGGATGTCAGCATGGATGAGCATGTGGCTTCC
CAGTTGCTATGCGGGGGACAAGGCAAGCTCAAGCTGGAACACTGAGCGAC
AGGTTCAGAAGCAGGTCATGAGGCCCCATGCACAAAAGAGACGCCACACC
TCCGACCAAAATCCCGTCGCTTTCGCCCCTTCCTAGCCACTCCCTTCGCT
CACCATGTACGCTCTGTTGTGGTCGATGTGACTTTCAGGGGTCAATCAAG
GCGGTCAATTTCTTACTGTCTCTCCCGTCGATGGGCGAGCGATTCTTCCT
TGAAAGGAGTCCTCTCTCCGAAATTGTCAACGGCTGCATGCCTCTGTACA
ACATTCTCATGGTACCATTTCCTCACACTCCCGATCTGAAGCGTCGTATT
GGACAGCAGGCCCAGCCACACTTTCTCCTACGACCGCTTCCGCGGGCCTG
GCTGTGAACAGGGACAAAGAGTAAACGAGCACCGTACGCGCTCCTTTCAT
TCCTTCCTCCAGCCGAGACCTCCCCTCCCCCTACTACTTATCCTCTAACT
TGTTCGGTCTTGCGCGTTTCCTGCTGCCATGGACCGGTTCGCCAACATCC
AGCAAATTGGGGAGGGTACATATGGGGTTGTTTATAAGGGCTACATGAAG
GGCTCGGGGGGCTCATCCAGTGGGGAGCTTATCGCCCTGAAACAGATCCG
GTTGGCCGACGAAGATGAAGGGGTGCCCTCCACCGCCATTCGGGAAATCT
CCCTTCTTAAAGAGCTGTCGCACCCAAACGTGGTCACGCTTAAGGATGTG
ATTTACGCGGATAATCGGCTGTACTTAGTTTTTGAATACCTGGACCAGGA
TCTGAAGCGCTACATGGATGGATGCAAAACGGGCTTGGACCCCGCCTTAG
TCAAGTCGTACTTACACCAGATGATCCAGGGGGTTGCCTTCTGCCATTCG
CACCGGGTGCTGCACCGAGATCTCAAGCCCCAGAATCTGCTCATCGACCG
CCATGGATGCCTTAAGCTCGCTGACTTTGGTCTTGCTCGGGCGTTTAATG
TGCCACTGCGGCAGTATACGAGGGAGGTGGTGACGTTGTGGTACCGGGCG
CCCGAGATTCTGCTTGGGGCCGAGCACTACTCCACCCCTGTGGACACGTG
GTCCATCGGCTGCATATTTGCGGAAATGTTGAATAAGGAGCCTCTCTTTC
CGGGGGACTCGGAGATCGATGAGCTCTTTCGCATCTTCAGGACGCTTGGC
ACGCCGGACGACGACATGTGGCCCAAGGTTTCGGAGCTACCCAACTACAA
GACACAATTCCCCAAATGGAGACGGCAGCCGCTCGGCATGAGCGTGGCCC
GCCTCTGCTCCACTGGAATAGATCTCCTTTCGCGGCTTCTGACGTACGAG
CCGACGGCCCGCATCACATGCAGGGAAGCCAAGGAGCACCCCTATTTTGC
GGATTTGGTGTCAAGGAATGACACTGTGTAGCAACAGACATGCGAGCCAA
CAAATCTTGTAGGAGGATGCAGTGATCAATGCACCAAAAAACCAATCCAC
CATAAG
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protein sequence of NO03G02910.1

>NO03G02910.1-protein ID=NO03G02910.1-protein|Name=NO03G02910.1|organism=Nannochloropsis oceanica|type=polypeptide|length=301bp
MDRFANIQQIGEGTYGVVYKGYMKGSGGSSSGELIALKQIRLADEDEGVP
STAIREISLLKELSHPNVVTLKDVIYADNRLYLVFEYLDQDLKRYMDGCK
TGLDPALVKSYLHQMIQGVAFCHSHRVLHRDLKPQNLLIDRHGCLKLADF
GLARAFNVPLRQYTREVVTLWYRAPEILLGAEHYSTPVDTWSIGCIFAEM
LNKEPLFPGDSEIDELFRIFRTLGTPDDDMWPKVSELPNYKTQFPKWRRQ
PLGMSVARLCSTGIDLLSRLLTYEPTARITCREAKEHPYFADLVSRNDTV
*
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mRNA from alignment at chr3:876254..878410-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO03G02910.1 ID=NO03G02910.1|Name=NO03G02910.1|organism=Nannochloropsis oceanica|type=mRNA|length=2157bp|location=Sequence derived from alignment at chr3:876254..878410- (Nannochloropsis oceanica)
AAGGAGCTTTGGATGCTAGCCTTGCGTTGCCTATCCCCTTCAGACAGTTG TGAGGGAGAGGGAGAGGAGGGATGTCAGCATGGATGAGCATGTGGCTTCC CAGTTGCTATGCGGGGGACAAGGCAAGCTCAAGCTGGAACACTGAGCGAC AGGTTCAGAAGCAGGTCATGAGGCCCCATGCACAAAAGAGACGCCACACC TCCGACCAAAATCCCGTCGCTTTCGCCCCTTCCTAGCCACTCCCTTCGCT CACCATGTACGCTCTGTTGTGGTCGATGTGACTTTCAGGGGTCAATCAAG GCGGTCAATTTCTTACTGTCTCTCCCGTCGATGGGCGAGCGATTCTTCCT TGAAAGGAGTCCTCTCTCCGAAATTGTCAACGGCTGCATGCCTCTGTACA ACATTCTCATGGTACCATTTCCTCACACTCCCGATCTGAAGCGTCGTATT GGACAGCAGGCCCAGCCACACTTTCTCCTACGACCGCTTCCGCGGGCCTG GCTGTGAACAGGGACAAAGAGTAAACGAGCACCGTACGCGCTCCTTTCAT TCCTTCCTCCAGCCGAGACCTCCCCTCCCCCTACTACTTATCCTCTAACT TGTTCGGTCTTGCGCGTTTCCTGCTGCCATGGACCGGTTCGCCAACATCC AGCAAATTGGGGAGGGTACATATGGGGTTGTTTATAAGGGCTACATGAAG GGCTCGGGGGGCTCATCCAGTGGGGAGCTTATCGCCCTGAAACAGATCCG GTTGGCCGACGAAGATGAAGGGGTGCCCTCCACCGCCATTCGGGAAATCT CCCTTCTTAAAGAGCTGTCGCACCCAAACGTGGTCACGCTTAAGGATGTG ATTTACGCGGATAATCGGCTGTACTTAGTTTTTGAATACCTGGACCAGGA TCTGAAGCGCTACATGGATGGATGCAAAACGGGCTTGGACCCCGCCTTAG TCAAGGTGCGTTTCGGGTTGCGGGCTATGGGGAGTGGCTATGGCTTTCGC ATAGATAAAGGCTGTGTTTGATCTTCGTTTTTCCGCGTTGACTATTTTAT GTATCAATCCATCTCCTGCACGTCCCCCCCTCTACCTCTTCTACAGTCGT ACTTACACCAGATGATCCAGGGGGTTGCCTTCTGCCATTCGCACCGGGTG CTGCACCGAGATCTCAAGCCCCAGAATCTGCTCATCGACCGCCATGGATG CCTTAAGCTCGCTGACTTTGGTCTTGCTCGGGCGTTTAATGTGCCACTGC GGCAGTATACGAGGGAGGTGAGAAAGTGGCACAGGAAGAGTGTAAGCCCT GTGGGGAAGCCGTAGGAATTTGGGACAGAGAGGGGTGGTTGCGGTTTTGA GAGGGAAAATACTGCAGGATTAAGGAATATACTTTAAGCGTCTTTCATCC TTTCTGTTTCTTTTTGCCCCCTTCCCCCCCACACATGTAAGGTGGTGACG TTGTGGTACCGGGCGCCCGAGATTCTGCTTGGGGCCGAGCACTACTCCAC CCCTGTGGACACGTGGTCCATCGGCTGCATATTTGCGGAAATGTTGAATA AGGAGCCTCTCTTTCCGGGGGACTCGGAGATCGATGAGCTCTTTCGCATC TTCAGGTAATAGGTGGATGAAGGCGGGGGGCTGTTCGTGTAGGTCCCAGG TTTGAGGCGGGCTCTACGCACTCACTTTCTGCTCCATTCTTCTCTCTATC TCGCCTAGGACGCTTGGCACGCCGGACGACGACATGTGGCCCAAGGTTTC GGAGCTACCCAACTACAAGACACAATTCCCCAAATGGAGACGGCAGCCGC TCGGCATGAGCGTGGCCCGCCTCTGCTCCACTGGAATAGATCTCCTTTCG GTGCGTGATTCAGATTGATTGAAAAGAGGGGGCAAGGGCCCATACGAATA CCTTCAAACAGATCGTTAGAAATCATCTGGCGCGTCTCTTCTATAAATCG CCCACACATTCTCCCTCTCCCTCCCAAAAACAGCGGCTTCTGACGTACGA GCCGACGGCCCGCATCACATGCAGGGAAGCCAAGGAGCACCCCTATTTTG CGGATTTGGTGTCAAGGAATGACACTGTGTAGCAACAGACATGCGAGCCA ACAAATCTTGTAGGAGGATGCAGTGATCAATGCACCAAAAAACCAATCCA CCATAAG
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Coding sequence (CDS) from alignment at chr3:876254..878410-

>NO03G02910.1 ID=NO03G02910.1|Name=NO03G02910.1|organism=Nannochloropsis oceanica|type=CDS|length=903bp|location=Sequence derived from alignment at chr3:876254..878410- (Nannochloropsis oceanica)
ATGGACCGGTTCGCCAACATCCAGCAAATTGGGGAGGGTACATATGGGGT
TGTTTATAAGGGCTACATGAAGGGCTCGGGGGGCTCATCCAGTGGGGAGC
TTATCGCCCTGAAACAGATCCGGTTGGCCGACGAAGATGAAGGGGTGCCC
TCCACCGCCATTCGGGAAATCTCCCTTCTTAAAGAGCTGTCGCACCCAAA
CGTGGTCACGCTTAAGGATGTGATTTACGCGGATAATCGGCTGTACTTAG
TTTTTGAATACCTGGACCAGGATCTGAAGCGCTACATGGATGGATGCAAA
ACGGGCTTGGACCCCGCCTTAGTCAAGTCGTACTTACACCAGATGATCCA
GGGGGTTGCCTTCTGCCATTCGCACCGGGTGCTGCACCGAGATCTCAAGC
CCCAGAATCTGCTCATCGACCGCCATGGATGCCTTAAGCTCGCTGACTTT
GGTCTTGCTCGGGCGTTTAATGTGCCACTGCGGCAGTATACGAGGGAGGT
GGTGACGTTGTGGTACCGGGCGCCCGAGATTCTGCTTGGGGCCGAGCACT
ACTCCACCCCTGTGGACACGTGGTCCATCGGCTGCATATTTGCGGAAATG
TTGAATAAGGAGCCTCTCTTTCCGGGGGACTCGGAGATCGATGAGCTCTT
TCGCATCTTCAGGACGCTTGGCACGCCGGACGACGACATGTGGCCCAAGG
TTTCGGAGCTACCCAACTACAAGACACAATTCCCCAAATGGAGACGGCAG
CCGCTCGGCATGAGCGTGGCCCGCCTCTGCTCCACTGGAATAGATCTCCT
TTCGCGGCTTCTGACGTACGAGCCGACGGCCCGCATCACATGCAGGGAAG
CCAAGGAGCACCCCTATTTTGCGGATTTGGTGTCAAGGAATGACACTGTG
TAG
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Synonyms
Publications