NO03G02890.1, NO03G02890.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO03G02890.1
Unique NameNO03G02890.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1188
Alignment locationchr3:872402..874723 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:872402..874723 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO03G02890.1 vs.
Match: XP_005855202.1 (ania-6a type cyclin, partial [Nannochloropsis gaditana CCMP526]; EKU21157.1 ania-6a type cyclin, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 171.4 bits (433), Expect = 5.600e-39
Identity = 82/110 (74.55%), Postives = 91/110 (82.73%), Query Frame = 0
Query:    1 MFVFHHIRRRRRSLPPSLLEVTSSRYHDLREALLTFGKYVLKELGFGFCNVMDHQHNFVLCYNKILGGFPELAQKAWNYLNDSLRLDCCVRYRAALSACAALYMAARNLG 111
            +FVFHH+ RRRR L PSLLEVTS RYHDLREALL   KYVLKELGFGF ++MDH H F+L Y K L G P LAQ+AWNYLNDSLRLDCCVR+RA L AC ALYMA+R+LG
Sbjct:  158 LFVFHHMCRRRRGLGPSLLEVTSVRYHDLREALLMIEKYVLKELGFGFYSIMDHPHKFILYYIKTLDGTPTLAQRAWNYLNDSLRLDCCVRFRAELIACTALYMASRDLG 267          
The following BLAST results are available for this feature:
BLAST of NO03G02890.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005855202.15.600e-3974.55ania-6a type cyclin, partial [Nannochloropsis gadi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO03G02890NO03G02890Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO03G02890.1NO03G02890.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO03G02890.1.cds1NO03G02890.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO03G02890.1.cds2NO03G02890.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO03G02890.1.cds3NO03G02890.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO03G02890.1.cds4NO03G02890.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO03G02890.1 ID=NO03G02890.1|Name=NO03G02890.1|organism=Nannochloropsis oceanica|type=mRNA|length=1188bp
ATGTTCGTCTTCCATCACATACGTCGGCGGCGTCGATCCCTCCCTCCCTC
CTTGCTGGAAGTCACATCTTCTCGGTACCATGACTTGCGCGAAGCCCTCC
TGACATTCGGAAAGTACGTCCTGAAAGAACTCGGCTTCGGGTTTTGTAAT
GTGATGGACCACCAACACAACTTTGTCCTCTGTTACAACAAAATCTTGGG
GGGGTTCCCGGAGCTTGCTCAGAAGGCCTGGAATTATTTGAACGATAGTT
TGAGGCTTGACTGCTGCGTGCGGTACCGCGCGGCACTGAGTGCATGTGCT
GCTCTGTATATGGCGGCGAGGAATTTGGGGACAACGTTCGCCACGTGGAA
GTGCAACTGGCTTCCGGTCTTCGATGACTCGAAATTCAATTCTTGGAGAC
TCTCGCGGCCTGAGACTCGGCAAGAAAAGGCGTATATGCCGCTTCCTTTG
CGTGGCATTTGTTTTCGCCCACTGCTTCCCTCGAACCGACAAAAACGAGG
AGAAAATATGGAGGGCGGCTGCAGTCGTAAAGGCACGATGGGCCATTGGG
CACGTAATATGGGCCACAGGGCACGTTATTTGTTGTATATTGAGCAACAG
CTGCCACTATCAGCACAGTGGTTTACAAGGTGGCCCCCTACGCCAGCCTG
GAAGCGAACAATAACACAGTGGCAACACCAGAGTGACAGTGGGCGCCGAG
ACAAGCCGACCGGATTGAGGGAGGGGTTATGCGGGAGCAAGAGCAGCAGC
AGCAGCAGCAGCAGAAGCAGTAGGGTGGGGGAGGAGAAGGAGGGGGAGAA
GGGGAAGAAAGAAAATGGACCACGGCAGCAGAAGCAGCAAAGGCAGCACC
AGCACGAGCACGAGCAGAAGCAGCAGGAGAAGGAAGGAGAGGAGGGGAAG
GAGAGGAGGGGGAGAAAGAAGAAATGCTGGAGGGGTTCGAAGAGGAGTGC
GAGCAGTACTAGCACGAGCAGCAGCAGGATGGGGAGGGGGAGGGAGAGGA
GCAGGAGCTGGAGGGGAAGTGTGGGAGCAGGAGCAGGAGTGGGAGGGAGG
GAAGAGCGGATGAGAGGTAGAGGATGGGTGGGAGGGGAAGCAGCAGTAGC
AGGAGGAGAAGGAGAAAGAGAAGGAGGAGGAAAGAGGAGTGGGAATGGGA
TTTCACATGCCATCCATCCGAGAAATCTGTCGGTGTGA
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protein sequence of NO03G02890.1

>NO03G02890.1-protein ID=NO03G02890.1-protein|Name=NO03G02890.1|organism=Nannochloropsis oceanica|type=polypeptide|length=396bp
MFVFHHIRRRRRSLPPSLLEVTSSRYHDLREALLTFGKYVLKELGFGFCN
VMDHQHNFVLCYNKILGGFPELAQKAWNYLNDSLRLDCCVRYRAALSACA
ALYMAARNLGTTFATWKCNWLPVFDDSKFNSWRLSRPETRQEKAYMPLPL
RGICFRPLLPSNRQKRGENMEGGCSRKGTMGHWARNMGHRARYLLYIEQQ
LPLSAQWFTRWPPTPAWKRTITQWQHQSDSGRRDKPTGLREGLCGSKSSS
SSSSRSSRVGEEKEGEKGKKENGPRQQKQQRQHQHEHEQKQQEKEGEEGK
ERRGRKKKCWRGSKRSASSTSTSSSRMGRGRERSRSWRGSVGAGAGVGGR
EERMRGRGWVGGEAAVAGGEGEREGGGKRSGNGISHAIHPRNLSV*
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mRNA from alignment at chr3:872402..874723-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO03G02890.1 ID=NO03G02890.1|Name=NO03G02890.1|organism=Nannochloropsis oceanica|type=mRNA|length=2322bp|location=Sequence derived from alignment at chr3:872402..874723- (Nannochloropsis oceanica)
ATGTTCGTCTTCCATCACATACGTCGGCGGCGTCGATCCCTCCCTCCCTC CTTGCTGGAAGTCACATCTTCTCGGTACCATGACTTGCGCGAAGCCCTCC TGACATTCGGAAAGTACGTCCTGAAAGAACTCGGCTTCGGGTTTTGTAAT GTGATGGACCACCAACACAACTTTGTCCTCTGTTACAACAAAATCTTGGG GGGGTTCCCGGAGCTTGCTCAGAAGGCCTGGAATTATTTGAACGATAGTT TGAGGCTTGACTGCTGCGTGCGGTACCGCGCGGCACTGAGTGCATGTGCT GCTCTGTATATGGCGGCGAGGAATTTGGGGACAACGTTCGCCACGTGGAA GTGCAACTGGCTTCCGGTCTTCGATGACTCGAAATTCAATTCTTGGAGAC TCTCGCGGCCTGAGACTCGGCAAGAAAAGGCGTATATGCCGCTTCCTTTG CGTGGCATTTGTTTTCGCCCACTGCTTCCCTCGAACCGACAAAAACGAGG AGAAAATATGGAGGGCGGCTGCAGTCGTAAAGGCACGATGGGCCATTGGG CACGTAATATGGGCCACAGGGCACGTACCTTGTATTGAAAGAATGCCAAA ATTAAAGTACTGGCAATCATCAACTACTAGGATATCATTTGTGCGTGACA GCGACGATGTAGGTGGACGCCATATTATATCTTGCCTTTCAGGCCGCACA TTTTCACGAACCCGAGGGGAAAATGGGAAAGCTAGACTAATTGTTTTGAA TCTTTCGGGGATTCTAGCGTGCGCGTGCGTGCGGTTCTTTTTCCATGGGT TGTATTTGCGCCCTCGACAAAGCAGGCGCTACCCGCTGGAAAGTCCCGTT GTCTTAAAGGTCAACAAATAATGTATAAGGACTTGGATGTAAGTCAAGCA GAAACAAAGCATGGTGTGGAATCTGGCCAGCACATCACGTTAGATACTGT GAGCACATCCCGCCCCAAATCCGAACAATTCGCTGAGTTCCCCTCACGGA AAGTGAAGACGTTGACTTCTTCTCCCTACTTAAAAAAAATATATTGATGA GCTTTTTGGACAGTCCGGGACGAGGCATGCGTACAAGGGTGTTGGCTACA TGCTACTCCAGGTTATTTGTTGTATATTGAGCAACAGCTGCCACTATCAG CACAGTGGTTTACAAGGTGCAGTAGAATACCTTCCCTCCTCCCAAGAGCC GAGACGAGCGTGCATGGCACCGCCTCCGCTGCAAAGCATTTGGCTCGCTG CTTTTTTTACTGCCGCCGCCACCATATCCACCACCGACACCAACCCACCG CCACATCCCCCACACCCACACTCCCACAGGTGGCCCCCTACGCCAGCCTG GAAGCGAACAATAACACAGTGGCAACACCAGAGTGACAGTGGGCGCCGAG ACAAGCGTGCGTGGCGCCGCCTCCCTTGCACAGCATTTCCTTCCTGCGCC ACACCGGCCTCCTACCATCGTTTCCCTGTCCAGCTCCGCGCGACAACCTA CTTTTCCCCTTGTGCCGCGGACCACACTGTGCGCTTCATAAGAACAGTCA TTGGACCAGAGGGGGCACCTTGCTTGCCCTTTACACATCTGTTCACCACC AGGATGAATCATGGGCGCCCACTTTTCGTAGCCCCATCCTACCCACTTTT ATCTTAGCACGCCTTCCTAGGGGCGACGAACTTCTATGCGGACATCGTCT TTGTTTGTATGCCTTGGTCTGTGGAGTCGTGATCCTTTGAGTAGGACTAT CAACCCTCATAACCAGATTTTCGCGGTTCTATGTGTCCCTCCCTTTATTT TCCGTCCAAAAACACAGAATTGCCCTCTGTTAAAGTCAAGCGACCGGATT GAGGGAGGGGTTATGCGGGAGCAAGAGCAGCAGCAGCAGCAGCAGCAGAA GCAGTAGGGTGGGGGAGGAGAAGGAGGGGGAGAAGGGGAAGAAAGAAAAT GGACCACGGCAGCAGAAGCAGCAAAGGCAGCACCAGCACGAGCACGAGCA GAAGCAGCAGGAGAAGGAAGGAGAGGAGGGGAAGGAGAGGAGGGGGAGAA AGAAGAAATGCTGGAGGGGTTCGAAGAGGAGTGCGAGCAGTACTAGCACG AGCAGCAGCAGGATGGGGAGGGGGAGGGAGAGGAGCAGGAGCTGGAGGGG AAGTGTGGGAGCAGGAGCAGGAGTGGGAGGGAGGGAAGAGCGGATGAGAG GTAGAGGATGGGTGGGAGGGGAAGCAGCAGTAGCAGGAGGAGAAGGAGAA AGAGAAGGAGGAGGAAAGAGGAGTGGGAATGGGATTTCACATGCCATCCA TCCGAGAAATCTGTCGGTGTGA
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Coding sequence (CDS) from alignment at chr3:872402..874723-

>NO03G02890.1 ID=NO03G02890.1|Name=NO03G02890.1|organism=Nannochloropsis oceanica|type=CDS|length=1188bp|location=Sequence derived from alignment at chr3:872402..874723- (Nannochloropsis oceanica)
ATGTTCGTCTTCCATCACATACGTCGGCGGCGTCGATCCCTCCCTCCCTC
CTTGCTGGAAGTCACATCTTCTCGGTACCATGACTTGCGCGAAGCCCTCC
TGACATTCGGAAAGTACGTCCTGAAAGAACTCGGCTTCGGGTTTTGTAAT
GTGATGGACCACCAACACAACTTTGTCCTCTGTTACAACAAAATCTTGGG
GGGGTTCCCGGAGCTTGCTCAGAAGGCCTGGAATTATTTGAACGATAGTT
TGAGGCTTGACTGCTGCGTGCGGTACCGCGCGGCACTGAGTGCATGTGCT
GCTCTGTATATGGCGGCGAGGAATTTGGGGACAACGTTCGCCACGTGGAA
GTGCAACTGGCTTCCGGTCTTCGATGACTCGAAATTCAATTCTTGGAGAC
TCTCGCGGCCTGAGACTCGGCAAGAAAAGGCGTATATGCCGCTTCCTTTG
CGTGGCATTTGTTTTCGCCCACTGCTTCCCTCGAACCGACAAAAACGAGG
AGAAAATATGGAGGGCGGCTGCAGTCGTAAAGGCACGATGGGCCATTGGG
CACGTAATATGGGCCACAGGGCACGTTATTTGTTGTATATTGAGCAACAG
CTGCCACTATCAGCACAGTGGTTTACAAGGTGGCCCCCTACGCCAGCCTG
GAAGCGAACAATAACACAGTGGCAACACCAGAGTGACAGTGGGCGCCGAG
ACAAGCCGACCGGATTGAGGGAGGGGTTATGCGGGAGCAAGAGCAGCAGC
AGCAGCAGCAGCAGAAGCAGTAGGGTGGGGGAGGAGAAGGAGGGGGAGAA
GGGGAAGAAAGAAAATGGACCACGGCAGCAGAAGCAGCAAAGGCAGCACC
AGCACGAGCACGAGCAGAAGCAGCAGGAGAAGGAAGGAGAGGAGGGGAAG
GAGAGGAGGGGGAGAAAGAAGAAATGCTGGAGGGGTTCGAAGAGGAGTGC
GAGCAGTACTAGCACGAGCAGCAGCAGGATGGGGAGGGGGAGGGAGAGGA
GCAGGAGCTGGAGGGGAAGTGTGGGAGCAGGAGCAGGAGTGGGAGGGAGG
GAAGAGCGGATGAGAGGTAGAGGATGGGTGGGAGGGGAAGCAGCAGTAGC
AGGAGGAGAAGGAGAAAGAGAAGGAGGAGGAAAGAGGAGTGGGAATGGGA
TTTCACATGCCATCCATCCGAGAAATCTGTCGGTGTGA
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Synonyms
Publications