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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr3 | genome | chr3:872402..874723 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO03G02890.1 vs.
Match: XP_005855202.1 (ania-6a type cyclin, partial [Nannochloropsis gaditana CCMP526]; EKU21157.1 ania-6a type cyclin, partial [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 171.4 bits (433), Expect = 5.600e-39 Identity = 82/110 (74.55%), Postives = 91/110 (82.73%), Query Frame = 0
Query: 1 MFVFHHIRRRRRSLPPSLLEVTSSRYHDLREALLTFGKYVLKELGFGFCNVMDHQHNFVLCYNKILGGFPELAQKAWNYLNDSLRLDCCVRYRAALSACAALYMAARNLG 111
+FVFHH+ RRRR L PSLLEVTS RYHDLREALL KYVLKELGFGF ++MDH H F+L Y K L G P LAQ+AWNYLNDSLRLDCCVR+RA L AC ALYMA+R+LG
Sbjct: 158 LFVFHHMCRRRRGLGPSLLEVTSVRYHDLREALLMIEKYVLKELGFGFYSIMDHPHKFILYYIKTLDGTPTLAQRAWNYLNDSLRLDCCVRFRAELIACTALYMASRDLG 267
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO03G02890.1 ID=NO03G02890.1|Name=NO03G02890.1|organism=Nannochloropsis oceanica|type=mRNA|length=1188bp ATGTTCGTCTTCCATCACATACGTCGGCGGCGTCGATCCCTCCCTCCCTC CTTGCTGGAAGTCACATCTTCTCGGTACCATGACTTGCGCGAAGCCCTCC TGACATTCGGAAAGTACGTCCTGAAAGAACTCGGCTTCGGGTTTTGTAAT GTGATGGACCACCAACACAACTTTGTCCTCTGTTACAACAAAATCTTGGG GGGGTTCCCGGAGCTTGCTCAGAAGGCCTGGAATTATTTGAACGATAGTT TGAGGCTTGACTGCTGCGTGCGGTACCGCGCGGCACTGAGTGCATGTGCT GCTCTGTATATGGCGGCGAGGAATTTGGGGACAACGTTCGCCACGTGGAA GTGCAACTGGCTTCCGGTCTTCGATGACTCGAAATTCAATTCTTGGAGAC TCTCGCGGCCTGAGACTCGGCAAGAAAAGGCGTATATGCCGCTTCCTTTG CGTGGCATTTGTTTTCGCCCACTGCTTCCCTCGAACCGACAAAAACGAGG AGAAAATATGGAGGGCGGCTGCAGTCGTAAAGGCACGATGGGCCATTGGG CACGTAATATGGGCCACAGGGCACGTTATTTGTTGTATATTGAGCAACAG CTGCCACTATCAGCACAGTGGTTTACAAGGTGGCCCCCTACGCCAGCCTG GAAGCGAACAATAACACAGTGGCAACACCAGAGTGACAGTGGGCGCCGAG ACAAGCCGACCGGATTGAGGGAGGGGTTATGCGGGAGCAAGAGCAGCAGC AGCAGCAGCAGCAGAAGCAGTAGGGTGGGGGAGGAGAAGGAGGGGGAGAA GGGGAAGAAAGAAAATGGACCACGGCAGCAGAAGCAGCAAAGGCAGCACC AGCACGAGCACGAGCAGAAGCAGCAGGAGAAGGAAGGAGAGGAGGGGAAG GAGAGGAGGGGGAGAAAGAAGAAATGCTGGAGGGGTTCGAAGAGGAGTGC GAGCAGTACTAGCACGAGCAGCAGCAGGATGGGGAGGGGGAGGGAGAGGA GCAGGAGCTGGAGGGGAAGTGTGGGAGCAGGAGCAGGAGTGGGAGGGAGG GAAGAGCGGATGAGAGGTAGAGGATGGGTGGGAGGGGAAGCAGCAGTAGC AGGAGGAGAAGGAGAAAGAGAAGGAGGAGGAAAGAGGAGTGGGAATGGGA TTTCACATGCCATCCATCCGAGAAATCTGTCGGTGTGA back to topprotein sequence of NO03G02890.1 >NO03G02890.1-protein ID=NO03G02890.1-protein|Name=NO03G02890.1|organism=Nannochloropsis oceanica|type=polypeptide|length=396bp MFVFHHIRRRRRSLPPSLLEVTSSRYHDLREALLTFGKYVLKELGFGFCN VMDHQHNFVLCYNKILGGFPELAQKAWNYLNDSLRLDCCVRYRAALSACA ALYMAARNLGTTFATWKCNWLPVFDDSKFNSWRLSRPETRQEKAYMPLPL RGICFRPLLPSNRQKRGENMEGGCSRKGTMGHWARNMGHRARYLLYIEQQ LPLSAQWFTRWPPTPAWKRTITQWQHQSDSGRRDKPTGLREGLCGSKSSS SSSSRSSRVGEEKEGEKGKKENGPRQQKQQRQHQHEHEQKQQEKEGEEGK ERRGRKKKCWRGSKRSASSTSTSSSRMGRGRERSRSWRGSVGAGAGVGGR EERMRGRGWVGGEAAVAGGEGEREGGGKRSGNGISHAIHPRNLSV* back to topmRNA from alignment at chr3:872402..874723- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO03G02890.1 ID=NO03G02890.1|Name=NO03G02890.1|organism=Nannochloropsis oceanica|type=mRNA|length=2322bp|location=Sequence derived from alignment at chr3:872402..874723- (Nannochloropsis oceanica) ATGTTCGTCTTCCATCACATACGTCGGCGGCGTCGATCCCTCCCTCCCTC
CTTGCTGGAAGTCACATCTTCTCGGTACCATGACTTGCGCGAAGCCCTCC
TGACATTCGGAAAGTACGTCCTGAAAGAACTCGGCTTCGGGTTTTGTAAT
GTGATGGACCACCAACACAACTTTGTCCTCTGTTACAACAAAATCTTGGG
GGGGTTCCCGGAGCTTGCTCAGAAGGCCTGGAATTATTTGAACGATAGTT
TGAGGCTTGACTGCTGCGTGCGGTACCGCGCGGCACTGAGTGCATGTGCT
GCTCTGTATATGGCGGCGAGGAATTTGGGGACAACGTTCGCCACGTGGAA
GTGCAACTGGCTTCCGGTCTTCGATGACTCGAAATTCAATTCTTGGAGAC
TCTCGCGGCCTGAGACTCGGCAAGAAAAGGCGTATATGCCGCTTCCTTTG
CGTGGCATTTGTTTTCGCCCACTGCTTCCCTCGAACCGACAAAAACGAGG
AGAAAATATGGAGGGCGGCTGCAGTCGTAAAGGCACGATGGGCCATTGGG
CACGTAATATGGGCCACAGGGCACGTACCTTGTATTGAAAGAATGCCAAA
ATTAAAGTACTGGCAATCATCAACTACTAGGATATCATTTGTGCGTGACA
GCGACGATGTAGGTGGACGCCATATTATATCTTGCCTTTCAGGCCGCACA
TTTTCACGAACCCGAGGGGAAAATGGGAAAGCTAGACTAATTGTTTTGAA
TCTTTCGGGGATTCTAGCGTGCGCGTGCGTGCGGTTCTTTTTCCATGGGT
TGTATTTGCGCCCTCGACAAAGCAGGCGCTACCCGCTGGAAAGTCCCGTT
GTCTTAAAGGTCAACAAATAATGTATAAGGACTTGGATGTAAGTCAAGCA
GAAACAAAGCATGGTGTGGAATCTGGCCAGCACATCACGTTAGATACTGT
GAGCACATCCCGCCCCAAATCCGAACAATTCGCTGAGTTCCCCTCACGGA
AAGTGAAGACGTTGACTTCTTCTCCCTACTTAAAAAAAATATATTGATGA
GCTTTTTGGACAGTCCGGGACGAGGCATGCGTACAAGGGTGTTGGCTACA
TGCTACTCCAGGTTATTTGTTGTATATTGAGCAACAGCTGCCACTATCAG
CACAGTGGTTTACAAGGTGCAGTAGAATACCTTCCCTCCTCCCAAGAGCC
GAGACGAGCGTGCATGGCACCGCCTCCGCTGCAAAGCATTTGGCTCGCTG
CTTTTTTTACTGCCGCCGCCACCATATCCACCACCGACACCAACCCACCG
CCACATCCCCCACACCCACACTCCCACAGGTGGCCCCCTACGCCAGCCTG
GAAGCGAACAATAACACAGTGGCAACACCAGAGTGACAGTGGGCGCCGAG
ACAAGCGTGCGTGGCGCCGCCTCCCTTGCACAGCATTTCCTTCCTGCGCC
ACACCGGCCTCCTACCATCGTTTCCCTGTCCAGCTCCGCGCGACAACCTA
CTTTTCCCCTTGTGCCGCGGACCACACTGTGCGCTTCATAAGAACAGTCA
TTGGACCAGAGGGGGCACCTTGCTTGCCCTTTACACATCTGTTCACCACC
AGGATGAATCATGGGCGCCCACTTTTCGTAGCCCCATCCTACCCACTTTT
ATCTTAGCACGCCTTCCTAGGGGCGACGAACTTCTATGCGGACATCGTCT
TTGTTTGTATGCCTTGGTCTGTGGAGTCGTGATCCTTTGAGTAGGACTAT
CAACCCTCATAACCAGATTTTCGCGGTTCTATGTGTCCCTCCCTTTATTT
TCCGTCCAAAAACACAGAATTGCCCTCTGTTAAAGTCAAGCGACCGGATT
GAGGGAGGGGTTATGCGGGAGCAAGAGCAGCAGCAGCAGCAGCAGCAGAA
GCAGTAGGGTGGGGGAGGAGAAGGAGGGGGAGAAGGGGAAGAAAGAAAAT
GGACCACGGCAGCAGAAGCAGCAAAGGCAGCACCAGCACGAGCACGAGCA
GAAGCAGCAGGAGAAGGAAGGAGAGGAGGGGAAGGAGAGGAGGGGGAGAA
AGAAGAAATGCTGGAGGGGTTCGAAGAGGAGTGCGAGCAGTACTAGCACG
AGCAGCAGCAGGATGGGGAGGGGGAGGGAGAGGAGCAGGAGCTGGAGGGG
AAGTGTGGGAGCAGGAGCAGGAGTGGGAGGGAGGGAAGAGCGGATGAGAG
GTAGAGGATGGGTGGGAGGGGAAGCAGCAGTAGCAGGAGGAGAAGGAGAA
AGAGAAGGAGGAGGAAAGAGGAGTGGGAATGGGATTTCACATGCCATCCA
TCCGAGAAATCTGTCGGTGTGA back to topCoding sequence (CDS) from alignment at chr3:872402..874723- >NO03G02890.1 ID=NO03G02890.1|Name=NO03G02890.1|organism=Nannochloropsis oceanica|type=CDS|length=1188bp|location=Sequence derived from alignment at chr3:872402..874723- (Nannochloropsis oceanica) ATGTTCGTCTTCCATCACATACGTCGGCGGCGTCGATCCCTCCCTCCCTC CTTGCTGGAAGTCACATCTTCTCGGTACCATGACTTGCGCGAAGCCCTCC TGACATTCGGAAAGTACGTCCTGAAAGAACTCGGCTTCGGGTTTTGTAAT GTGATGGACCACCAACACAACTTTGTCCTCTGTTACAACAAAATCTTGGG GGGGTTCCCGGAGCTTGCTCAGAAGGCCTGGAATTATTTGAACGATAGTT TGAGGCTTGACTGCTGCGTGCGGTACCGCGCGGCACTGAGTGCATGTGCT GCTCTGTATATGGCGGCGAGGAATTTGGGGACAACGTTCGCCACGTGGAA GTGCAACTGGCTTCCGGTCTTCGATGACTCGAAATTCAATTCTTGGAGAC TCTCGCGGCCTGAGACTCGGCAAGAAAAGGCGTATATGCCGCTTCCTTTG CGTGGCATTTGTTTTCGCCCACTGCTTCCCTCGAACCGACAAAAACGAGG AGAAAATATGGAGGGCGGCTGCAGTCGTAAAGGCACGATGGGCCATTGGG CACGTAATATGGGCCACAGGGCACGTTATTTGTTGTATATTGAGCAACAG CTGCCACTATCAGCACAGTGGTTTACAAGGTGGCCCCCTACGCCAGCCTG GAAGCGAACAATAACACAGTGGCAACACCAGAGTGACAGTGGGCGCCGAG ACAAGCCGACCGGATTGAGGGAGGGGTTATGCGGGAGCAAGAGCAGCAGC AGCAGCAGCAGCAGAAGCAGTAGGGTGGGGGAGGAGAAGGAGGGGGAGAA GGGGAAGAAAGAAAATGGACCACGGCAGCAGAAGCAGCAAAGGCAGCACC AGCACGAGCACGAGCAGAAGCAGCAGGAGAAGGAAGGAGAGGAGGGGAAG GAGAGGAGGGGGAGAAAGAAGAAATGCTGGAGGGGTTCGAAGAGGAGTGC GAGCAGTACTAGCACGAGCAGCAGCAGGATGGGGAGGGGGAGGGAGAGGA GCAGGAGCTGGAGGGGAAGTGTGGGAGCAGGAGCAGGAGTGGGAGGGAGG GAAGAGCGGATGAGAGGTAGAGGATGGGTGGGAGGGGAAGCAGCAGTAGC AGGAGGAGAAGGAGAAAGAGAAGGAGGAGGAAAGAGGAGTGGGAATGGGA TTTCACATGCCATCCATCCGAGAAATCTGTCGGTGTGA back to top
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