NO03G02850.3, NO03G02850.3 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO03G02850.3
Unique Name	NO03G02850.3
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	1172
Alignment location	chr3:857958..859765 -

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr3	genome	chr3:857958..859765 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

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BLAST of NO03G02850.3 vs.
Match: EWM29725.1 (adp-ribosylation factor 3 [Nannochloropsis gaditana])

HSP 1 Score: 274.6 bits (701), Expect = 2.800e-70
Identity = 135/145 (93.10%), Postives = 142/145 (97.93%), Query Frame = 0

Query:    1 MGLLISKIMQSLSTMFGSKECRILILGLDNAGKTTILNRLQNDSDEVMQTVPTIGFNVETLQYKNIKFQVWDLGGQTSIRPYWRCYFPNTDAIIFVVDSADVERLAIAKQELCAMLEEEELRDSILLVFANKQDQKGALNASQVT 146
            MGLL S+I+QS S MFG+KECRILILGLDNAGKTTILNRLQNDSDEVMQTVPTIGFNVETLQYKNIKFQVWDLGGQTSIRPYWRCY+PNTDAIIFVVDSADVERLAIAKQELCAMLEEEELR+SILLVFANKQDQKGALNASQ++
Sbjct:    1 MGLLFSRIIQSFSAMFGNKECRILILGLDNAGKTTILNRLQNDSDEVMQTVPTIGFNVETLQYKNIKFQVWDLGGQTSIRPYWRCYYPNTDAIIFVVDSADVERLAIAKQELCAMLEEEELRESILLVFANKQDQKGALNASQIS 145

The following BLAST results are available for this feature:

BLAST of NO03G02850.3 vs.

BLAST of NO03G02850.3 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
EWM29725.1	2.800e-70	93.10	adp-ribosylation factor 3 [Nannochloropsis gaditan...	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO03G02850	NO03G02850	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO03G02850.3	NO03G02850.3-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO03G02850.3.cds1	NO03G02850.3.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO03G02850.3.cds2	NO03G02850.3.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO03G02850.3.cds3	NO03G02850.3.cds3	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO03G02850.3.cds4	NO03G02850.3.cds4	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr3:857958..859765-
coding sequence from alignment at chr3:857958..859765-

mRNA sequence

>NO03G02850.3 ID=NO03G02850.3|Name=NO03G02850.3|organism=Nannochloropsis oceanica|type=mRNA|length=1172bp
ATTAAAGAAAGGGTAGCGAGAGAGATGGAAAGGCGGGGGGGCGGTGGCCT
ACCAGCGCCTGTCTCCCGTTCCCGAACCGGTCGAATTCCAGCTACAATTG
CGACTCCATTGCGACAAATAAGTGAATGGACATCTTCTGAAGGCAGCAGC
AAGAAGTCGTCGTCCCTATTGATTCTAATTCCACTTTACCTTTCCTACTC
TCCCTCTACAGGAGCGCCAACAAGAAACTCCCCTTCCTCGCTGCGCCGCC
TTCTTTTTCACAGGGCATCTCAGTACAGGAGCTACTCTTTGAACGATGGG
TTTGCTTATTTCTAAGATCATGCAGTCTCTTTCTACCATGTTCGGCTCCA
AGGAGTGCAGAATTTTGATCCTTGGACTAGACAATGCCGGGAAGACCACA
ATATTGAACAGGCTGCAAAATGACTCGGACGAGGTGATGCAGACTGTGCC
GACGATTGGCTTCAATGTGGAGACACTGCAATACAAGAACATCAAGTTCC
AGGTGTGGGACCTGGGTGGCCAGACCAGCATCCGCCCTTACTGGCGGTGC
TATTTCCCCAACACTGACGCCATCATCTTCGTGGTGGACAGTGCGGATGT
GGAGAGGCTTGCCATCGCAAAGCAGGAGCTGTGTGCCATGCTGGAAGAAG
AAGAACTTCGTGACTCCATCCTACTCGTCTTTGCCAACAAGCAGGACCAG
AAAGGCGCCCTCAACGCAAGCCAGGTAACGTGGCAGCATATGCATCCCTT
TACTTACCGATTTAAACCCGCTCCTTCCCACCCTCTTCCATCCCTCTCTT
CTTATTACTACAAATTAACGCTTTCCTTTTCATCAACGCCGATCTTTACT
TATCATGTTCCGGTCTTGCAGATTTCCGAGGCCCTGGGCCTACCCAACCT
CAGAAACAGGCAATGGTCGATTCAAGAGACCTCTGCGACCAAAGGAAAGG
GGTTGTTCGAAGGCTTTGATTGGCTGTCGACGGCAATTATGGGGGGTGGG
AAGTGAGGGTTGGGAGCAATCTCTTGTGGGAGTTTGTGTACGGAGTCAGG
CATGTTAACGCAAGATGAAAGGATGTCAGACGGAGAAATCGGGGCGGCAG
GCGCAACTCATGTATGTAACATTAGAAACTGCATCTTTTCCTGTTCCGGT
ATCGCACACTGCAAGACCAAAT

protein sequence of NO03G02850.3

>NO03G02850.3-protein ID=NO03G02850.3-protein|Name=NO03G02850.3|organism=Nannochloropsis oceanica|type=polypeptide|length=237bp
MGLLISKIMQSLSTMFGSKECRILILGLDNAGKTTILNRLQNDSDEVMQT
VPTIGFNVETLQYKNIKFQVWDLGGQTSIRPYWRCYFPNTDAIIFVVDSA
DVERLAIAKQELCAMLEEEELRDSILLVFANKQDQKGALNASQVTWQHMH
PFTYRFKPAPSHPLPSLSSYYYKLTLSFSSTPIFTYHVPVLQISEALGLP
NLRNRQWSIQETSATKGKGLFEGFDWLSTAIMGGGK*

mRNA from alignment at chr3:857958..859765-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO03G02850.3 ID=NO03G02850.3|Name=NO03G02850.3|organism=Nannochloropsis oceanica|type=mRNA|length=1808bp|location=Sequence derived from alignment at chr3:857958..859765- (Nannochloropsis oceanica)
ATTAAAGAAAGGGTAGCGAGAGAGATGGAAAGGCGGGGGGGCGGTGGCCT
ACCAGCGCCTGTCTCCCGTTCCCGAACCGGTCGAATTCCAGCTACAATTG
CGACTCCATTGCGACAAATAAGTGAATGGACATCTTCTGAAGGCAGCAGC
AAGAAGTCGTCGTCCCTATTGATTCTAATTCCACTTTACCTTTCCTACTC
TCCCTCTACAGGAGCGCCAACAAGAAACTCCCCTTCCTCGCTGCGCCGCC
TTCTTTTTCACAGGGCATCTCAGTACAGGAGCTACTCTTTGAACGATGTA
AGTATGATGAGAAAAGTTCGAGACATGAATGAATGAAGTGCCAGGCTTCA
TGGCGCTGGTGCGATTTCTTCGACCTGATGTCGTTCAGGCCCCGCGTCAT
CGTCGTCTACATGTCAAAATAGTCAGGACATGAGCTTTTTCTCGCAAGTC
CGTGGCCAACTAGCGGATCATTTTCATTTGGCTTTGGACTTGGCTCTGGA
TGTGTGGACTTGCATATTTCCAAGATCTCAAGATAAAGATAAAGCAGCCT
GGCGCTTCGGCGGGGGAGGGGGGGTCGTAGGGGTGGATGGGAGTTTCCCG
ACGACGCATCAACTAATGTCGATGGGCACTAAACACACCAAATCATAGGG
GTTTGCTTATTTCTAAGATCATGCAGTCTCTTTCTACCATGTTCGGCTCC
AAGGAGTGCAGAATTTTGATCCTTGGACTAGACAATGCCGGGAAGACCAC
AATATTGAACAGGCTGCAAAATGACTCGGACGAGGTGATGCAGACTGTGC
CGACGATTGGGTGAGCGATTGGCCATTATAGACCTCCTTATGTCCCGTAG
CTACTCTTTCTTTACCCTTGTACTCCCATCTGTTGTTTGACACCACGAAG
AGCTATCTGATTTCTCGTCTTTTTTTCTTCCTCCATCTAGCTTCAATGTG
GAGACACTGCAATACAAGAACATCAAGTTCCAGGTACGTCGTGTCTATGC
GCGTAAGGAGCAATGATCAGGGTGCCGGGCTTCTGATCTCGTGTATGCGC
TCTCCACTTGCCCGAGCTCGCTATTCTGCCCACTTCCTCTCTTGTTACGA
CTGCCCCTTGACATAGTATCATGCACGCACAATCGCAGGTGTGGGACCTG
GGTGGCCAGACCAGCATCCGCCCTTACTGGCGGTGCTATTTCCCCAACAC
TGACGCCATCATCTTCGTGGTGGACAGTGCGGATGTGGAGAGGCTTGCCA
TCGCAAAGCAGGAGCTGTGTGCCATGCTGGAAGAAGAAGAACTTCGTGAC
TCCATCCTACTCGTCTTTGCCAACAAGCAGGACCAGAAAGGCGCCCTCAA
CGCAAGCCAGGTAACGTGGCAGCATATGCATCCCTTTACTTACCGATTTA
AACCCGCTCCTTCCCACCCTCTTCCATCCCTCTCTTCTTATTACTACAAA
TTAACGCTTTCCTTTTCATCAACGCCGATCTTTACTTATCATGTTCCGGT
CTTGCAGATTTCCGAGGCCCTGGGCCTACCCAACCTCAGAAACAGGCAAT
GGTCGATTCAAGAGACCTCTGCGACCAAAGGAAAGGGGTTGTTCGAAGGC
TTTGATTGGCTGTCGACGGCAATTATGGGGGGTGGGAAGTGAGGGTTGGG
AGCAATCTCTTGTGGGAGTTTGTGTACGGAGTCAGGCATGTTAACGCAAG
ATGAAAGGATGTCAGACGGAGAAATCGGGGCGGCAGGCGCAACTCATGTA
TGTAACATTAGAAACTGCATCTTTTCCTGTTCCGGTATCGCACACTGCAA
GACCAAAT

Coding sequence (CDS) from alignment at chr3:857958..859765-

>NO03G02850.3 ID=NO03G02850.3|Name=NO03G02850.3|organism=Nannochloropsis oceanica|type=CDS|length=711bp|location=Sequence derived from alignment at chr3:857958..859765- (Nannochloropsis oceanica)
ATGGGTTTGCTTATTTCTAAGATCATGCAGTCTCTTTCTACCATGTTCGG
CTCCAAGGAGTGCAGAATTTTGATCCTTGGACTAGACAATGCCGGGAAGA
CCACAATATTGAACAGGCTGCAAAATGACTCGGACGAGGTGATGCAGACT
GTGCCGACGATTGGCTTCAATGTGGAGACACTGCAATACAAGAACATCAA
GTTCCAGGTGTGGGACCTGGGTGGCCAGACCAGCATCCGCCCTTACTGGC
GGTGCTATTTCCCCAACACTGACGCCATCATCTTCGTGGTGGACAGTGCG
GATGTGGAGAGGCTTGCCATCGCAAAGCAGGAGCTGTGTGCCATGCTGGA
AGAAGAAGAACTTCGTGACTCCATCCTACTCGTCTTTGCCAACAAGCAGG
ACCAGAAAGGCGCCCTCAACGCAAGCCAGGTAACGTGGCAGCATATGCAT
CCCTTTACTTACCGATTTAAACCCGCTCCTTCCCACCCTCTTCCATCCCT
CTCTTCTTATTACTACAAATTAACGCTTTCCTTTTCATCAACGCCGATCT
TTACTTATCATGTTCCGGTCTTGCAGATTTCCGAGGCCCTGGGCCTACCC
AACCTCAGAAACAGGCAATGGTCGATTCAAGAGACCTCTGCGACCAAAGG
AAAGGGGTTGTTCGAAGGCTTTGATTGGCTGTCGACGGCAATTATGGGGG
GTGGGAAGTGA

Synonyms

Publications