NO03G02810.1, NO03G02810.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO03G02810.1
Unique NameNO03G02810.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length922
Alignment locationchr3:841726..843145 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:841726..843145 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO03G02810.1 vs.
Match: EWM29733.1 (snf7 family protein [Nannochloropsis gaditana])

HSP 1 Score: 343.6 bits (880), Expect = 5.000e-91
Identity = 182/201 (90.55%), Postives = 194/201 (96.52%), Query Frame = 0 
Query:   41 MGNKPSLEDHLVNLRLTSKQMVRGSKKCESSEKEAKSKLKKAIEARNTEGARVYAQNAIREKTQALNYLRLSSRIDAVAARLESAIRMKQVTGAMAGIVTGMDTALKDMDVEKLAKIMDQFEKQFEDTDVRTGYLEGAIASTTASSTPQEMVDNLIQETADAHNLELGTMLDDAGMVGNKLPAVEAPAANDLEQRFAALRK 242
            MGNKPSLEDHLVNLRLTSKQMVRGSKKCESSEK+A++KLKKAI++RN EGAR+YAQNAIREKTQALNYLRLSSRIDAVAARLESAIRMKQVTGAMAGIV GMDTALKDMDVEKLAK+MDQFEKQFEDTDVRTGYLEGAIASTTAS+TPQEMVD+LIQETADAHNLELGTMLD+AGMV + LPAVEA A N+LEQRF ALRK
Sbjct:    1 MGNKPSLEDHLVNLRLTSKQMVRGSKKCESSEKDARNKLKKAIQSRNLEGARIYAQNAIREKTQALNYLRLSSRIDAVAARLESAIRMKQVTGAMAGIVAGMDTALKDMDVEKLAKVMDQFEKQFEDTDVRTGYLEGAIASTTASATPQEMVDSLIQETADAHNLELGTMLDNAGMVSDNLPAVEAQATNNLEQRFEALRK 201
The following BLAST results are available for this feature:
BLAST of NO03G02810.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29733.15.000e-9190.55snf7 family protein [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO03G02810NO03G02810Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO03G02810.1NO03G02810.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO03G02810.1.cds1NO03G02810.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO03G02810.1.cds2NO03G02810.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO03G02810.1.cds3NO03G02810.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO03G02810.1.cds4NO03G02810.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO03G02810.1.cds5NO03G02810.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO03G02810.1 ID=NO03G02810.1|Name=NO03G02810.1|organism=Nannochloropsis oceanica|type=mRNA|length=922bp
ATGCCCTCGGAGGCATCGAGCCATATGACTGCTATCTGCGAGCTAGAATG
TTTGGTGTATCAAGAGCTGCCTTGGGCGAGAGCCAATACAAGTCCACGGA
GAGAAACGAGCAAATCGGTCATGGGGAACAAACCGTCTCTCGAAGACCAC
CTGGTCAACCTGCGGCTGACAAGCAAGCAAATGGTGCGGGGTTCGAAGAA
ATGTGAGTCAAGCGAAAAGGAGGCTAAAAGTAAGCTGAAGAAGGCCATCG
AGGCCCGTAACACGGAAGGGGCCCGCGTCTATGCACAGAACGCTATTCGG
GAGAAGACGCAGGCCTTAAATTACTTGAGGCTGTCCTCCAGAATAGATGC
GGTGGCGGCGCGCTTGGAAAGCGCAATACGAATGAAGCAGGTAACGGGTG
CCATGGCAGGCATTGTCACGGGCATGGATACGGCGCTCAAAGATATGGAC
GTTGAGAAGTTGGCCAAGATCATGGACCAGTTTGAGAAGCAATTCGAAGA
CACGGACGTTCGCACGGGATATTTGGAGGGTGCCATCGCCAGTACCACCG
CCAGTTCCACGCCCCAGGAGATGGTCGACAATCTGATTCAGGAGACGGCC
GACGCCCACAACCTCGAGCTGGGCACCATGCTGGACGACGCAGGCATGGT
TGGCAACAAGCTGCCAGCTGTGGAAGCGCCTGCCGCGAATGACTTGGAGC
AACGCTTTGCTGCTCTTCGGAAGTAGGCACTGAAGGGTGCACGCATCGTA
GGGGTGTAGAGAAATGGTTGTTTTAGGTTGGGAGTAATAGGCCTCGATGT
CTAGAGGAAATAAACAATATACGTAGACGATATACGATATACGCCTTTTC
AAAAAATGCACGAACAAAATTACATCACGGCGGGACTTATGATGGGGCAC
ATTTTGTGTGAGCCTCCCGGGA
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protein sequence of NO03G02810.1

>NO03G02810.1-protein ID=NO03G02810.1-protein|Name=NO03G02810.1|organism=Nannochloropsis oceanica|type=polypeptide|length=242bp
MPSEASSHMTAICELECLVYQELPWARANTSPRRETSKSVMGNKPSLEDH
LVNLRLTSKQMVRGSKKCESSEKEAKSKLKKAIEARNTEGARVYAQNAIR
EKTQALNYLRLSSRIDAVAARLESAIRMKQVTGAMAGIVTGMDTALKDMD
VEKLAKIMDQFEKQFEDTDVRTGYLEGAIASTTASSTPQEMVDNLIQETA
DAHNLELGTMLDDAGMVGNKLPAVEAPAANDLEQRFAALRK*
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mRNA from alignment at chr3:841726..843145+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO03G02810.1 ID=NO03G02810.1|Name=NO03G02810.1|organism=Nannochloropsis oceanica|type=mRNA|length=1420bp|location=Sequence derived from alignment at chr3:841726..843145+ (Nannochloropsis oceanica)
ATGCCCTCGGAGGCATCGAGCCATATGACTGCTATCTGCGAGCTAGAATG
TTTGGTGTATCAAGAGCTGCCTTGGGCGAGAGCCAAGTCAGTACGAACCA
GCCTCTTGCGCACCCTCGTATGGTTTACTACGGGGCGCCGTACACACTAG
TAGTTGTGGCGGCGGCGATCATGCCAAACTTCCAATTCCATCGATGTTGT
CAGATGTCATTATTCCTCCCTCTCCACATTAATTATCCTCTCTCCAACTT
CCCAACAGTACAAGTCCACGGAGAGAAACGAGCAAATCGGTCATGGGGAA
CAAACCGTCTCTCGAAGGTGAGTCTACCCTCGAGATATGTGCAGCCTGGG
ATTTCTCTCTATGACATGACCAATTATGACTCTCCTCCTACTTTTTCCAC
CTTTCCCTCCACTTCCTGCCTGTGTATTCAGACCACCTGGTCAACCTGCG
GCTGACAAGCAAGCAAATGGTGCGGGGTTCGAAGAAATGTGAGTCAAGCG
AAAAGGAGGCTAAAAGTAAGCTGAAGAAGGCCATCGAGGCCCGTAACACG
GAAGGGGCCCGCGTCTATGCACAGGTACTACTCCTCGTTCTCCACCTCTA
CCATTCTCGCGACGATCTTCACTTTTACTCACTTTAAAAAAAATTGCCCA
TCACAGAACGCTATTCGGGAGAAGACGCAGGCCTTAAATTACTTGAGGCT
GTCCTCCAGAATAGATGCGGTGGCGGCGCGCTTGGAAAGCGCAATACGAA
TGAAGCAGGTAACGGGTGCCATGGCAGGCATTGTCACGGGCATGGATACG
GCGCTCAAAGATATGGACGTTGAGAAGGTAGGTACCGCGTGTGGATTAAA
ATAGCTAGTCCGGCGCATGAAAATTTTAGACATCTTTGCCGGGGCATACA
CTCATGATGATGTCCTCATCTCTTTCTTGCCCCACCCACACATCCCTGTC
CTTTCAGTTGGCCAAGATCATGGACCAGTTTGAGAAGCAATTCGAAGACA
CGGACGTTCGCACGGGATATTTGGAGGGTGCCATCGCCAGTACCACCGCC
AGTTCCACGCCCCAGGAGATGGTCGACAATCTGATTCAGGAGACGGCCGA
CGCCCACAACCTCGAGCTGGGCACCATGCTGGACGACGCAGGCATGGTTG
GCAACAAGCTGCCAGCTGTGGAAGCGCCTGCCGCGAATGACTTGGAGCAA
CGCTTTGCTGCTCTTCGGAAGTAGGCACTGAAGGGTGCACGCATCGTAGG
GGTGTAGAGAAATGGTTGTTTTAGGTTGGGAGTAATAGGCCTCGATGTCT
AGAGGAAATAAACAATATACGTAGACGATATACGATATACGCCTTTTCAA
AAAATGCACGAACAAAATTACATCACGGCGGGACTTATGATGGGGCACAT
TTTGTGTGAGCCTCCCGGGA
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Coding sequence (CDS) from alignment at chr3:841726..843145+

>NO03G02810.1 ID=NO03G02810.1|Name=NO03G02810.1|organism=Nannochloropsis oceanica|type=CDS|length=726bp|location=Sequence derived from alignment at chr3:841726..843145+ (Nannochloropsis oceanica)
ATGCCCTCGGAGGCATCGAGCCATATGACTGCTATCTGCGAGCTAGAATG
TTTGGTGTATCAAGAGCTGCCTTGGGCGAGAGCCAATACAAGTCCACGGA
GAGAAACGAGCAAATCGGTCATGGGGAACAAACCGTCTCTCGAAGACCAC
CTGGTCAACCTGCGGCTGACAAGCAAGCAAATGGTGCGGGGTTCGAAGAA
ATGTGAGTCAAGCGAAAAGGAGGCTAAAAGTAAGCTGAAGAAGGCCATCG
AGGCCCGTAACACGGAAGGGGCCCGCGTCTATGCACAGAACGCTATTCGG
GAGAAGACGCAGGCCTTAAATTACTTGAGGCTGTCCTCCAGAATAGATGC
GGTGGCGGCGCGCTTGGAAAGCGCAATACGAATGAAGCAGGTAACGGGTG
CCATGGCAGGCATTGTCACGGGCATGGATACGGCGCTCAAAGATATGGAC
GTTGAGAAGTTGGCCAAGATCATGGACCAGTTTGAGAAGCAATTCGAAGA
CACGGACGTTCGCACGGGATATTTGGAGGGTGCCATCGCCAGTACCACCG
CCAGTTCCACGCCCCAGGAGATGGTCGACAATCTGATTCAGGAGACGGCC
GACGCCCACAACCTCGAGCTGGGCACCATGCTGGACGACGCAGGCATGGT
TGGCAACAAGCTGCCAGCTGTGGAAGCGCCTGCCGCGAATGACTTGGAGC
AACGCTTTGCTGCTCTTCGGAAGTAG
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Synonyms
Publications