NO03G02760.1, NO03G02760.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO03G02760.1
Unique NameNO03G02760.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1284
Alignment locationchr3:782675..784461 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:782675..784461 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO03G02760.1 vs.
Match: EWM29714.1 (small gtp-binding protein [Nannochloropsis gaditana])

HSP 1 Score: 409.1 bits (1050), Expect = 9.100e-111
Identity = 212/224 (94.64%), Postives = 220/224 (98.21%), Query Frame = 0 
Query:    1 MAATSPVMSPSSPASLPQIPSLAKYKLVFLGDQGVGKTSIITRFMYDTFEKNYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDITNRASFLNTSKWVEDVRNERGNDVIIMLVGNKTDLSDRRQVSTEEGEDKAKQENIMFIETSAKAGFNIKPLFRKLATALPGMESAQSQGSANLIDIKLAATPATSSSDEAEARSRCSC 225
            MAATSPV SP+SPASLPQIPSLAKYKLVFLGDQGVGKTSIITRFMYDTFEKNYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDITNRASFLNTSKWV+DVRNERGNDVIIMLVGNKTDLSDRRQVSTEEGEDKAKQ+NIMFIETSAKAGFNIKPLFRKLATALPGMESAQ+QGSANLIDIKLAA PA SSS++A+ RSRC+C
Sbjct:   94 MAATSPVKSPTSPASLPQIPSLAKYKLVFLGDQGVGKTSIITRFMYDTFEKNYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDITNRASFLNTSKWVDDVRNERGNDVIIMLVGNKTDLSDRRQVSTEEGEDKAKQDNIMFIETSAKAGFNIKPLFRKLATALPGMESAQTQGSANLIDIKLAAAPA-SSSEQADTRSRCAC 316
The following BLAST results are available for this feature:
BLAST of NO03G02760.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29714.19.100e-11194.64small gtp-binding protein [Nannochloropsis gaditan... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO03G02760NO03G02760Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO03G02760.1NO03G02760.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO03G02760.1.cds1NO03G02760.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO03G02760.1.cds2NO03G02760.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO03G02760.1.cds3NO03G02760.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO03G02760.1.cds4NO03G02760.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO03G02760.1.cds5NO03G02760.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO03G02760.1 ID=NO03G02760.1|Name=NO03G02760.1|organism=Nannochloropsis oceanica|type=mRNA|length=1284bp
ACAGGAGCAAAGGGTTGCGGTGCAAAGACGCCGGTTGTCAATCCAAGCAT
TCCGGCCAAACCACTTGCCCTCTCCACTTCCCGTAAAAGCCCACGTCAAG
CAAAGTACAGCTCTCATCACTATGGCAGCCACGTCCCCCGTCATGTCTCC
TTCGTCACCGGCATCCCTGCCTCAGATACCTTCATTGGCCAAGTACAAGC
TAGTCTTTTTAGGGGATCAAGGCGTGGGAAAGACATCCATCATTACACGC
TTTATGTACGACACCTTTGAGAAGAACTACCAGGCCACGATCGGCATCGA
TTTTCTGTCCAAGACCATGTACTTGGAGGACCGCACCGTTCGACTGCAGC
TGTGGGACACAGCGGGGCAGGAACGATTTCGGAGCTTGATTCCGAGCTAC
ATTCGGGACTCCTCCGTGGCCGTGGTCGTGTACGACATCACAAATCGTGC
CTCCTTTTTGAACACGTCCAAGTGGGTGGAGGACGTGCGGAATGAGCGCG
GGAACGACGTCATCATCATGCTTGTCGGCAACAAGACGGATTTGAGTGAT
CGGCGGCAAGTGTCGACAGAAGAAGGTGAGGACAAGGCGAAGCAAGAGAA
TATCATGTTCATCGAGACGTCCGCCAAGGCGGGATTCAACATCAAGCCCC
TCTTCCGGAAGCTTGCCACAGCCTTGCCAGGAATGGAATCCGCCCAGAGC
CAAGGCAGTGCCAACCTTATTGACATCAAGCTAGCTGCCACTCCTGCAAC
TTCTTCTTCTGACGAAGCCGAGGCCAGATCACGCTGTTCGTGTTAGCGTG
GCGGAGGGAGAGGAAAGAGGAAGGGGGGGAGGGGGACAGGGGGAGAAAAC
AGTACCAGAGTATGGCGAGGACAAGGGCCCGCCAGAATATACATATCCTG
TTTGTAATTTGCGTCACTCGGAATAATGGGAGAAAGTTGATTTCATATCC
TCTTCGTGAAGGGAATTGAAATAAAAAATAAAGGTGAAAGAGATGTTCCA
TGCAACGCACGTAGAGTGATCGTCGCCAACATCCCTCTTTTCTTGTTTTA
GGCTCAACGCGGTGAGGCAATAGAAGCGGGAAGACATGAGCCCAAAATAA
AGATAATCCACCTCGACGTCCAGGTTCAGTGCTCCTTTGAGTCCTCTGAA
ACCCAACAATGCCCCATGCTTTCAAGTAATGACAAGAAGGAAGTCAATCG
AAACAACAGACCTAGAATCCTGGTGATGCCATGCTCGAACCCTTTTTGGC
AGCGGCGGACTCGCTGCTGTATGATAAGTCTTTC
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protein sequence of NO03G02760.1

>NO03G02760.1-protein ID=NO03G02760.1-protein|Name=NO03G02760.1|organism=Nannochloropsis oceanica|type=polypeptide|length=225bp
MAATSPVMSPSSPASLPQIPSLAKYKLVFLGDQGVGKTSIITRFMYDTFE
KNYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVA
VVVYDITNRASFLNTSKWVEDVRNERGNDVIIMLVGNKTDLSDRRQVSTE
EGEDKAKQENIMFIETSAKAGFNIKPLFRKLATALPGMESAQSQGSANLI
DIKLAATPATSSSDEAEARSRCSC*
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mRNA from alignment at chr3:782675..784461+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO03G02760.1 ID=NO03G02760.1|Name=NO03G02760.1|organism=Nannochloropsis oceanica|type=mRNA|length=1787bp|location=Sequence derived from alignment at chr3:782675..784461+ (Nannochloropsis oceanica)
ACAGGAGCAAAGGGTTGCGGTGCAAAGACGCCGGTTGTCAATCCAAGCAT
TCCGGCCAAACCACTTGCCCTCTCCACTTCCCGTAAAAGCCCACGTCAAG
CAAAGTACAGCTCTCATCACTATGGCAGCCACGTCCCCCGTCATGTCTCC
TTCGTCACCGGCATCCCTGCCTCAGATACCTTCATTGGCCAAGTACAAGC
TAGGTGAGTGGAGAAGGGGCAGGTGGAGCAAGAGATAGAGCACGGACTTG
CAGCATACACTTCTTTCCGGTTGCCGTCCTTGAGACTCACCCGTGCCTTT
ATGGCTGTATATTTTAGTCTTTTTAGGGGATCAAGGCGTGGGAAAGACAT
CCATCATTACACGCTTTATGTACGACACCTTTGAGAAGAACTACCAGGTG
CGTGTATACTCAAAAGATCGTGGGATGGGCCGGTCTGAGGGGTGGGAGGA
GAGAGATGCATGCATGCTGGAGCCACTCAATCCACGCCTTTTTCTTATTT
CTCTTTCTACGATACAACAGGCCACGATCGGCATCGATTTTCTGTCCAAG
ACCATGTACTTGGAGGACCGCACCGTTCGACTGCAGCTGTGGGACACAGC
GGGGCAGGAGTAAGTATTACTGACAGACTTGTGAAAGGAAGTATTACTGA
TAGACTTGTGAAAGGAATATGTCCTTACATATGTCGCATCTCGATTACTT
ATCGCGTTTCTTCTATCATTTCTTCCTCAGACGATTTCGGAGCTTGATTC
CGAGCTACATTCGGGACTCCTCCGTGGCCGTGGTCGTGTACGACATCACA
AGTAAGTGCATGCATCATTGATGGAAGAGAGCGCCTTTTTGACAGGGCTA
TCGCCAAGTTCTGTGTCCGTGCGGTTGGTCGGCTTACACCCATGCCATCT
TTTTCCACGTTCGGTCACCTGACTTCTCACACCTTATCAACCCTAGATCG
TGCCTCCTTTTTGAACACGTCCAAGTGGGTGGAGGACGTGCGGAATGAGC
GCGGGAACGACGTCATCATCATGCTTGTCGGCAACAAGACGGATTTGAGT
GATCGGCGGCAAGTGTCGACAGAAGAAGGTGAGGACAAGGCGAAGCAAGA
GAATATCATGTTCATCGAGACGTCCGCCAAGGCGGGATTCAACATCAAGC
CCCTCTTCCGGAAGCTTGCCACAGCCTTGCCAGGAATGGAATCCGCCCAG
AGCCAAGGCAGTGCCAACCTTATTGACATCAAGCTAGCTGCCACTCCTGC
AACTTCTTCTTCTGACGAAGCCGAGGCCAGATCACGCTGTTCGTGTTAGC
GTGGCGGAGGGAGAGGAAAGAGGAAGGGGGGGAGGGGGACAGGGGGAGAA
AACAGTACCAGAGTATGGCGAGGACAAGGGCCCGCCAGAATATACATATC
CTGTTTGTAATTTGCGTCACTCGGAATAATGGGAGAAAGTTGATTTCATA
TCCTCTTCGTGAAGGGAATTGAAATAAAAAATAAAGGTGAAAGAGATGTT
CCATGCAACGCACGTAGAGTGATCGTCGCCAACATCCCTCTTTTCTTGTT
TTAGGCTCAACGCGGTGAGGCAATAGAAGCGGGAAGACATGAGCCCAAAA
TAAAGATAATCCACCTCGACGTCCAGGTTCAGTGCTCCTTTGAGTCCTCT
GAAACCCAACAATGCCCCATGCTTTCAAGTAATGACAAGAAGGAAGTCAA
TCGAAACAACAGACCTAGAATCCTGGTGATGCCATGCTCGAACCCTTTTT
GGCAGCGGCGGACTCGCTGCTGTATGATAAGTCTTTC
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Coding sequence (CDS) from alignment at chr3:782675..784461+

>NO03G02760.1 ID=NO03G02760.1|Name=NO03G02760.1|organism=Nannochloropsis oceanica|type=CDS|length=675bp|location=Sequence derived from alignment at chr3:782675..784461+ (Nannochloropsis oceanica)
ATGGCAGCCACGTCCCCCGTCATGTCTCCTTCGTCACCGGCATCCCTGCC
TCAGATACCTTCATTGGCCAAGTACAAGCTAGTCTTTTTAGGGGATCAAG
GCGTGGGAAAGACATCCATCATTACACGCTTTATGTACGACACCTTTGAG
AAGAACTACCAGGCCACGATCGGCATCGATTTTCTGTCCAAGACCATGTA
CTTGGAGGACCGCACCGTTCGACTGCAGCTGTGGGACACAGCGGGGCAGG
AACGATTTCGGAGCTTGATTCCGAGCTACATTCGGGACTCCTCCGTGGCC
GTGGTCGTGTACGACATCACAAATCGTGCCTCCTTTTTGAACACGTCCAA
GTGGGTGGAGGACGTGCGGAATGAGCGCGGGAACGACGTCATCATCATGC
TTGTCGGCAACAAGACGGATTTGAGTGATCGGCGGCAAGTGTCGACAGAA
GAAGGTGAGGACAAGGCGAAGCAAGAGAATATCATGTTCATCGAGACGTC
CGCCAAGGCGGGATTCAACATCAAGCCCCTCTTCCGGAAGCTTGCCACAG
CCTTGCCAGGAATGGAATCCGCCCAGAGCCAAGGCAGTGCCAACCTTATT
GACATCAAGCTAGCTGCCACTCCTGCAACTTCTTCTTCTGACGAAGCCGA
GGCCAGATCACGCTGTTCGTGTTAG
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Synonyms
Publications